Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47336 * 2 1 4 4 C 1.52999 * 109.47260 * 240.00327 * 2 1 3 5 5 C 1.50699 * 109.47067 * 175.00112 * 4 2 1 6 6 H 1.08000 * 120.00153 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00016 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46907 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47047 * 119.99907 * 9 7 5 12 12 H 1.48500 * 109.47131 * 240.00063 * 9 7 5 13 13 S 1.81400 * 109.47349 * 120.00000 * 2 1 3 14 14 C 1.81400 * 103.00075 * 279.76883 * 13 2 1 15 15 C 1.53002 * 109.47011 * 61.02619 * 14 13 2 16 16 O 1.42900 * 109.47392 * 53.34124 * 15 14 13 17 17 C 1.53003 * 109.47506 * 181.02500 * 14 13 2 18 18 C 1.52999 * 109.47222 * 179.97438 * 17 14 13 19 19 C 1.52997 * 109.47208 * 300.00396 * 18 17 14 20 20 C 1.52997 * 109.47385 * 60.00019 * 19 18 17 21 21 C 1.52996 * 109.47435 * 301.02967 * 14 13 2 22 22 H 1.08998 * 109.47570 * 284.23210 * 1 2 3 23 23 H 1.09001 * 109.47508 * 44.23699 * 1 2 3 24 24 H 1.08999 * 109.47344 * 164.23385 * 1 2 3 25 25 H 1.08999 * 109.46720 * 294.99256 * 4 2 1 26 26 H 1.08998 * 109.47311 * 54.99765 * 4 2 1 27 27 H 0.97005 * 119.99681 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47597 * 173.34215 * 15 14 13 29 29 H 1.08997 * 109.47475 * 293.33966 * 15 14 13 30 30 H 0.96702 * 114.00498 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.46684 * 300.00538 * 17 14 13 32 32 H 1.08993 * 109.46691 * 59.99974 * 17 14 13 33 33 H 1.09002 * 109.46737 * 179.97438 * 18 17 14 34 34 H 1.09002 * 109.47026 * 60.00389 * 18 17 14 35 35 H 1.09004 * 109.46625 * 299.99818 * 19 18 17 36 36 H 1.09000 * 109.47237 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.46994 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47060 * 59.99877 * 20 19 18 39 39 H 1.09002 * 109.46946 * 299.99797 * 21 14 13 40 40 H 1.09002 * 109.47500 * 59.99700 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3127 6 1 4.0788 -0.0854 -0.5395 7 6 4.2304 -1.1934 -2.3577 8 7 3.5764 -1.8376 -3.2995 9 14 6.0921 -1.0610 -2.4368 10 1 6.5837 -0.2907 -1.2662 11 1 6.6863 -2.4218 -2.4183 12 1 6.4862 -0.3657 -3.6884 13 16 2.1346 -0.8551 1.4811 14 6 1.9879 0.4110 2.7718 15 6 0.5220 0.8249 2.9159 16 8 -0.2831 -0.3375 3.1220 17 6 2.4911 -0.1551 4.1012 18 6 2.3679 0.9131 5.1897 19 6 3.2072 2.1329 4.8045 20 6 2.7041 2.6991 3.4751 21 6 2.8268 1.6313 2.3870 22 1 -0.3634 0.2526 0.9961 23 1 -0.3634 0.7363 -0.7169 24 1 -0.3634 -0.9890 -0.2792 25 1 1.7517 -1.7714 -1.2055 26 1 1.6053 -0.2617 -2.1370 27 1 4.0609 -2.2450 -4.0346 28 1 0.4160 1.4961 3.7683 29 1 0.1977 1.3354 2.0091 30 1 -1.2265 -0.1499 3.2224 31 1 1.8933 -1.0244 4.3753 32 1 3.5353 -0.4499 3.9985 33 1 2.7259 0.5096 6.1369 34 1 1.3237 1.2083 5.2925 35 1 4.2514 1.8376 4.7017 36 1 3.1198 2.8937 5.5801 37 1 3.3024 3.5678 3.2005 38 1 1.6599 2.9943 3.5779 39 1 3.8712 1.3364 2.2843 40 1 2.4684 2.0347 1.4399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695878432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = -76.240377 kcal Electronic energy + Delta-G solvation = -18456.273249 eV Core-core repulsion = 15782.212409 eV Total energy + Delta-G solvation = -2674.060840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.21890 -36.06811 -34.44102 -32.04595 -31.14483 -30.69219 -27.45527 -25.69430 -23.25497 -22.63989 -22.17284 -20.28994 -18.58657 -17.35416 -16.54628 -16.07798 -15.17291 -14.85366 -14.52741 -14.40315 -14.06308 -13.68798 -13.01169 -12.67354 -12.47306 -12.27802 -12.16768 -12.07301 -11.67395 -11.42147 -11.29011 -11.10094 -11.04571 -10.71846 -10.55882 -10.37945 -10.28043 -10.15807 -9.80134 -9.57949 -9.24535 -9.05732 -8.71851 -8.28038 -6.61247 -5.93680 -3.93229 2.47042 3.36165 3.43635 3.48434 3.50440 4.32685 4.52860 4.72444 4.79864 4.98396 5.11701 5.23669 5.31165 5.41994 5.43654 5.54003 5.56579 5.66319 5.67976 5.80703 5.83736 5.93760 6.03389 6.07901 6.13022 6.15789 6.25771 6.29372 6.44092 6.47747 6.51154 6.77488 6.87407 7.60445 7.72300 7.76571 8.04320 8.44493 9.11156 9.69154 11.18169 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.006778 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.695086 B = 4130.200512 C = 4815.941511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 H 0.071 0.929 4 C 0.039 3.961 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 S -0.212 6.212 14 C -0.034 4.034 15 C 0.076 3.924 16 O -0.549 6.549 17 C -0.089 4.089 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.110 4.110 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.258 0.742 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.368 0.632 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 8.577 15.441 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 H 0.089 0.911 4 C 0.001 3.999 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.213 1.213 13 S 0.021 5.979 14 C -0.144 4.144 15 C -0.003 4.003 16 O -0.353 6.353 17 C -0.128 4.128 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.149 4.149 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.214 0.786 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.808 7.079 15.289 17.521 hybrid contribution 0.041 1.556 -0.392 1.605 sum -4.767 8.635 14.897 17.866 Atomic orbital electron populations 1.22395 0.95593 1.01991 1.01111 1.23366 0.96033 1.01133 0.96884 0.91101 1.19024 0.96443 0.95490 0.88930 1.21276 0.91569 1.33875 1.07653 0.91912 1.24990 0.98253 0.95496 0.95769 1.69978 1.35310 1.36412 1.12243 0.86556 0.86105 0.77773 0.77738 1.19637 1.21095 1.21267 1.86984 1.86268 1.22485 1.02206 1.22644 0.95149 0.98126 0.98443 1.22480 0.90991 0.87530 0.99344 1.86699 1.20973 1.32148 1.95485 1.21267 1.01764 0.98105 0.91629 1.21585 1.00119 0.95707 0.98010 1.21553 1.00044 0.97292 0.96847 1.21606 1.01038 0.98008 0.95137 1.21856 1.01051 0.93803 0.98214 0.92058 0.93476 0.92282 0.95802 0.95346 0.93188 0.93341 0.93098 0.78615 0.90759 0.91277 0.91980 0.91992 0.91787 0.92361 0.91869 0.92246 0.90097 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.94 37.15 0.33 -2.37 16 2 C -0.05 -0.96 2.38 -26.74 -0.06 -1.02 16 3 H 0.07 1.47 6.15 -51.92 -0.32 1.15 16 4 C 0.04 1.03 4.39 -27.88 -0.12 0.90 16 5 C -0.51 -14.34 8.53 -34.44 -0.29 -14.64 16 6 H 0.06 1.76 7.60 -52.49 -0.40 1.36 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 S -0.21 -4.33 18.83 -107.50 -2.02 -6.36 16 14 C -0.03 -0.51 0.52 -90.62 -0.05 -0.56 16 15 C 0.08 0.99 4.22 37.16 0.16 1.15 16 16 O -0.55 -7.34 11.54 -35.23 -0.41 -7.75 16 17 C -0.09 -1.24 4.65 -26.73 -0.12 -1.36 16 18 C -0.12 -1.25 5.65 -26.73 -0.15 -1.40 16 19 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 20 C -0.12 -1.32 5.65 -26.76 -0.15 -1.47 16 21 C -0.11 -1.59 4.56 -26.76 -0.12 -1.71 16 22 H 0.06 0.95 3.51 -51.93 -0.18 0.77 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.05 0.54 4.84 -51.93 -0.25 0.29 16 29 H 0.05 0.68 5.73 -51.93 -0.30 0.39 16 30 H 0.37 3.21 9.12 45.56 0.42 3.62 16 31 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.64 6.29 -51.93 -0.33 0.32 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.61 6.59 -51.93 -0.34 0.27 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.04 6.23 -51.93 -0.32 0.72 16 LS Contribution 308.93 15.07 4.66 4.66 Total: -1.00 -31.64 308.93 -8.69 -40.33 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.79 Total: 1.00 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -0.84 Total: -22.37 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.41 Total: -7.75 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.02 Total: -6.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.64 -8.69 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695878432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.909 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds