Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47336 * 2 1 4 4 C 1.52999 * 109.47260 * 240.00327 * 2 1 3 5 5 C 1.50699 * 109.47067 * 175.00112 * 4 2 1 6 6 H 1.08000 * 120.00153 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00016 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46907 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47047 * 119.99907 * 9 7 5 12 12 H 1.48500 * 109.47131 * 240.00063 * 9 7 5 13 13 S 1.81400 * 109.47349 * 120.00000 * 2 1 3 14 14 C 1.81400 * 103.00075 * 279.76883 * 13 2 1 15 15 C 1.53002 * 109.47011 * 61.02619 * 14 13 2 16 16 O 1.42900 * 109.47392 * 53.34124 * 15 14 13 17 17 C 1.53003 * 109.47506 * 181.02500 * 14 13 2 18 18 C 1.52999 * 109.47222 * 179.97438 * 17 14 13 19 19 C 1.52997 * 109.47208 * 300.00396 * 18 17 14 20 20 C 1.52997 * 109.47385 * 60.00019 * 19 18 17 21 21 C 1.52996 * 109.47435 * 301.02967 * 14 13 2 22 22 H 1.08998 * 109.47570 * 284.23210 * 1 2 3 23 23 H 1.09001 * 109.47508 * 44.23699 * 1 2 3 24 24 H 1.08999 * 109.47344 * 164.23385 * 1 2 3 25 25 H 1.08999 * 109.46720 * 294.99256 * 4 2 1 26 26 H 1.08998 * 109.47311 * 54.99765 * 4 2 1 27 27 H 0.97005 * 119.99681 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47597 * 173.34215 * 15 14 13 29 29 H 1.08997 * 109.47475 * 293.33966 * 15 14 13 30 30 H 0.96702 * 114.00498 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.46684 * 300.00538 * 17 14 13 32 32 H 1.08993 * 109.46691 * 59.99974 * 17 14 13 33 33 H 1.09002 * 109.46737 * 179.97438 * 18 17 14 34 34 H 1.09002 * 109.47026 * 60.00389 * 18 17 14 35 35 H 1.09004 * 109.46625 * 299.99818 * 19 18 17 36 36 H 1.09000 * 109.47237 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.46994 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47060 * 59.99877 * 20 19 18 39 39 H 1.09002 * 109.46946 * 299.99797 * 21 14 13 40 40 H 1.09002 * 109.47500 * 59.99700 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3127 6 1 4.0788 -0.0854 -0.5395 7 6 4.2304 -1.1934 -2.3577 8 7 3.5764 -1.8376 -3.2995 9 14 6.0921 -1.0610 -2.4368 10 1 6.5837 -0.2907 -1.2662 11 1 6.6863 -2.4218 -2.4183 12 1 6.4862 -0.3657 -3.6884 13 16 2.1346 -0.8551 1.4811 14 6 1.9879 0.4110 2.7718 15 6 0.5220 0.8249 2.9159 16 8 -0.2831 -0.3375 3.1220 17 6 2.4911 -0.1551 4.1012 18 6 2.3679 0.9131 5.1897 19 6 3.2072 2.1329 4.8045 20 6 2.7041 2.6991 3.4751 21 6 2.8268 1.6313 2.3870 22 1 -0.3634 0.2526 0.9961 23 1 -0.3634 0.7363 -0.7169 24 1 -0.3634 -0.9890 -0.2792 25 1 1.7517 -1.7714 -1.2055 26 1 1.6053 -0.2617 -2.1370 27 1 4.0609 -2.2450 -4.0346 28 1 0.4160 1.4961 3.7683 29 1 0.1977 1.3354 2.0091 30 1 -1.2265 -0.1499 3.2224 31 1 1.8933 -1.0244 4.3753 32 1 3.5353 -0.4499 3.9985 33 1 2.7259 0.5096 6.1369 34 1 1.3237 1.2083 5.2925 35 1 4.2514 1.8376 4.7017 36 1 3.1198 2.8937 5.5801 37 1 3.3024 3.5678 3.2005 38 1 1.6599 2.9943 3.5779 39 1 3.8712 1.3364 2.2843 40 1 2.4684 2.0347 1.4399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695878432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = -96.250820 kcal Electronic energy + Delta-G solvation = -18457.140967 eV Core-core repulsion = 15782.212409 eV Total energy + Delta-G solvation = -2674.928558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26686 -37.09048 -36.34376 -34.05979 -32.21622 -31.70975 -29.40461 -26.80159 -25.22359 -23.76698 -23.16822 -21.99706 -19.64520 -18.52964 -18.38675 -17.60544 -16.64893 -16.47251 -15.95297 -15.72196 -15.02565 -14.80511 -14.60332 -14.16692 -13.95468 -13.62715 -13.46200 -13.31692 -13.18060 -13.06266 -12.75943 -12.50501 -12.39579 -12.25184 -12.15914 -12.02619 -11.41708 -11.32704 -11.22551 -11.15703 -10.90702 -10.66401 -10.50442 -10.14945 -8.25533 -8.18521 -6.25351 1.00173 1.36750 1.38500 1.51363 1.97987 2.41396 3.15989 3.32978 3.67819 3.79275 4.08254 4.10264 4.15452 4.25228 4.31134 4.33929 4.42329 4.52906 4.56330 4.61184 4.68378 4.71868 4.88848 4.94770 5.08418 5.12572 5.13922 5.21865 5.25475 5.26175 5.33229 5.38523 5.42797 5.54738 5.55262 5.79481 6.22920 6.86221 7.01062 7.41038 8.94100 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.006778 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.695086 B = 4130.200512 C = 4815.941511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 H 0.073 0.927 4 C 0.046 3.954 5 C -0.515 4.515 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.276 1.276 13 S -0.286 6.286 14 C -0.016 4.016 15 C 0.080 3.920 16 O -0.569 6.569 17 C -0.088 4.088 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.110 4.110 22 H 0.089 0.911 23 H 0.061 0.939 24 H 0.043 0.957 25 H -0.012 1.012 26 H 0.006 0.994 27 H 0.261 0.739 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.390 0.610 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 10.738 17.794 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 H 0.091 0.909 4 C 0.008 3.992 5 C -0.553 4.553 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.202 1.202 13 S -0.054 6.054 14 C -0.126 4.126 15 C 0.001 3.999 16 O -0.376 6.376 17 C -0.126 4.126 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.151 4.151 21 C -0.150 4.150 22 H 0.108 0.892 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.006 0.994 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.239 0.761 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.933 9.250 17.644 20.524 hybrid contribution 0.056 0.866 -1.066 1.374 sum -4.877 10.117 16.578 20.024 Atomic orbital electron populations 1.22331 0.93015 1.01639 1.03272 1.23065 0.98035 1.00043 0.94772 0.90873 1.18836 0.95701 0.93761 0.90920 1.21565 0.92772 1.33515 1.07446 0.92041 1.25892 1.03370 0.95153 0.95432 1.70105 1.37339 1.37421 1.12978 0.85483 0.79983 0.77889 0.78259 1.18698 1.20821 1.20171 1.87110 1.87035 1.26465 1.04804 1.22783 0.97538 0.96105 0.96154 1.22432 0.89104 0.87743 1.00615 1.86660 1.22843 1.32618 1.95515 1.21271 1.00363 0.98987 0.92020 1.21568 1.01234 0.94707 0.97080 1.21569 0.99383 0.97616 0.97012 1.21599 1.02513 0.96909 0.94096 1.21821 0.99413 0.94533 0.99189 0.89217 0.92012 0.93805 0.99377 0.97552 0.92978 0.90033 0.93283 0.76118 0.92041 0.92940 0.90464 0.90575 0.92601 0.89636 0.90778 0.90452 0.92369 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.94 71.98 0.64 -4.45 16 2 C -0.03 -1.32 2.38 30.59 0.07 -1.25 16 3 H 0.07 3.07 6.15 -2.39 -0.01 3.06 16 4 C 0.05 2.51 4.39 29.85 0.13 2.64 16 5 C -0.51 -30.17 8.53 25.60 0.22 -29.95 16 6 H 0.06 3.54 7.60 -2.91 -0.02 3.52 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 9 Si 0.96 46.33 29.54 68.60 2.03 48.35 16 10 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 S -0.29 -11.99 18.83 -56.49 -1.06 -13.05 16 14 C -0.02 -0.47 0.52 -10.79 -0.01 -0.47 16 15 C 0.08 1.87 4.22 71.98 0.30 2.17 16 16 O -0.57 -13.86 11.54 -148.98 -1.72 -15.58 16 17 C -0.09 -2.32 4.65 30.59 0.14 -2.18 16 18 C -0.11 -1.94 5.65 30.59 0.17 -1.76 16 19 C -0.12 -1.99 5.92 30.59 0.18 -1.81 16 20 C -0.11 -2.11 5.65 30.58 0.17 -1.94 16 21 C -0.11 -3.06 4.56 30.58 0.14 -2.92 16 22 H 0.09 2.64 3.51 -2.39 -0.01 2.63 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 28 H 0.08 1.42 4.84 -2.38 -0.01 1.40 16 29 H 0.05 1.17 5.73 -2.39 -0.01 1.16 16 30 H 0.39 5.58 9.12 -74.06 -0.68 4.90 16 31 H 0.06 1.78 7.87 -2.39 -0.02 1.76 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.20 6.29 -2.39 -0.02 1.18 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.22 6.59 -2.39 -0.02 1.20 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.63 6.23 -2.39 -0.01 1.62 16 Total: -1.00 -71.14 308.93 2.51 -68.63 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.35 Total: 11.81 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 2.63 Total: -41.54 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.28 Total: -58.62 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.72 Total: -15.58 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: -11.99 SS G_CDS: -1.06 Total: -13.05 kcal Total: -71.14 2.51 -68.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695878432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.619 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds