Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47716 * 2 1 4 4 C 1.53003 * 109.47305 * 120.00161 * 2 1 3 5 5 C 1.50702 * 109.47283 * 184.99796 * 4 2 1 6 6 H 1.08003 * 119.99512 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00149 * 179.72752 * 5 4 2 8 8 N 1.31514 * 119.99894 * 0.27242 * 7 5 4 9 9 Si 1.86800 * 120.00197 * 180.27597 * 7 5 4 10 10 H 1.48497 * 109.46979 * 89.99504 * 9 7 5 11 11 H 1.48492 * 109.47214 * 209.99977 * 9 7 5 12 12 H 1.48505 * 109.46981 * 329.99828 * 9 7 5 13 13 S 1.81399 * 109.46882 * 240.00020 * 2 1 3 14 14 C 1.81402 * 103.00182 * 72.26314 * 13 2 1 15 15 C 1.52993 * 109.46876 * 261.67264 * 14 13 2 16 16 O 1.42897 * 109.47252 * 309.51050 * 15 14 13 17 17 C 1.52996 * 109.47487 * 141.66509 * 14 13 2 18 18 C 1.52994 * 109.47183 * 179.97438 * 17 14 13 19 19 C 1.52999 * 109.47216 * 60.00585 * 18 17 14 20 20 C 1.53010 * 109.46968 * 299.99728 * 19 18 17 21 21 C 1.53000 * 109.46780 * 21.66762 * 14 13 2 22 22 H 1.09000 * 109.47252 * 181.95118 * 1 2 3 23 23 H 1.09005 * 109.46450 * 301.94252 * 1 2 3 24 24 H 1.08998 * 109.47049 * 61.94415 * 1 2 3 25 25 H 1.09001 * 109.47130 * 65.00050 * 4 2 1 26 26 H 1.08998 * 109.47189 * 305.00127 * 4 2 1 27 27 H 0.96998 * 120.00019 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.48054 * 69.51161 * 15 14 13 29 29 H 1.09003 * 109.47137 * 189.50975 * 15 14 13 30 30 H 0.96702 * 114.00403 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47316 * 300.00676 * 17 14 13 32 32 H 1.09004 * 109.46444 * 60.00256 * 17 14 13 33 33 H 1.09003 * 109.47325 * 300.00229 * 18 17 14 34 34 H 1.09001 * 109.47568 * 180.02562 * 18 17 14 35 35 H 1.09000 * 109.47449 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47617 * 59.99694 * 19 18 17 37 37 H 1.08996 * 109.46924 * 300.00390 * 20 19 18 38 38 H 1.08995 * 109.47001 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.47492 * 300.00230 * 21 14 13 40 40 H 1.08996 * 109.47580 * 60.00190 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5391 7 6 4.2300 -1.1884 2.3609 8 7 3.5761 -1.8327 3.3026 9 14 6.0910 -1.0500 2.4436 10 1 6.4633 0.1756 3.1950 11 1 6.6458 -2.2418 3.1342 12 1 6.6434 -0.9737 1.0672 13 16 2.1346 -0.8551 -1.4811 14 6 1.7629 0.3207 -2.8115 15 6 0.4581 -0.0842 -3.5002 16 8 0.5153 -1.4676 -3.8534 17 6 2.9024 0.3126 -3.8325 18 6 2.5886 1.3039 -4.9548 19 6 2.4400 2.7089 -4.3677 20 6 1.3005 2.7170 -3.3466 21 6 1.6148 1.7255 -2.2238 22 1 -0.3634 -1.0271 0.0350 23 1 -0.3632 0.5438 0.8721 24 1 -0.3633 0.4833 -0.9069 25 1 1.7517 -1.7716 1.2055 26 1 1.6054 -0.2618 2.1370 27 1 4.0601 -2.2357 4.0403 28 1 -0.3782 0.0831 -2.8214 29 1 0.3211 0.5152 -4.4002 30 1 -0.2804 -1.7940 -4.2956 31 1 3.8320 0.6010 -3.3418 32 1 3.0079 -0.6883 -4.2511 33 1 1.6591 1.0149 -5.4455 34 1 3.4001 1.2978 -5.6825 35 1 2.2160 3.4150 -5.1672 36 1 3.3695 2.9978 -3.8771 37 1 0.3711 2.4281 -3.8372 38 1 1.1944 3.7181 -2.9287 39 1 0.8030 1.7314 -1.4964 40 1 2.5443 2.0141 -1.7331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695878435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = -78.881970 kcal Electronic energy + Delta-G solvation = -18395.638467 eV Core-core repulsion = 15721.463080 eV Total energy + Delta-G solvation = -2674.175388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.21664 -35.95095 -34.56896 -32.19150 -31.10659 -30.64223 -27.37795 -25.79682 -23.23749 -22.73076 -22.19579 -20.15849 -18.63353 -17.35893 -16.41202 -16.12055 -15.22549 -14.81873 -14.44162 -14.41725 -14.13346 -13.49215 -13.21297 -12.75216 -12.50750 -12.38386 -12.14457 -12.01554 -11.68421 -11.51687 -11.32026 -11.10150 -11.04735 -10.70225 -10.58910 -10.43331 -10.28647 -10.10309 -9.80247 -9.58737 -9.25555 -9.08511 -8.69550 -8.27583 -6.64698 -5.93668 -3.93480 2.46169 3.37406 3.43750 3.48790 3.50546 4.36152 4.53256 4.71511 4.79984 4.96383 5.11259 5.23908 5.30624 5.41913 5.43752 5.52393 5.54058 5.63777 5.68709 5.78094 5.81479 5.87552 6.00337 6.04695 6.06084 6.11973 6.22121 6.26816 6.41718 6.43458 6.51606 6.69879 6.84504 7.59864 7.72191 7.81534 8.04286 8.44184 9.10953 9.69152 11.18091 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.006405 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.716351 B = 4370.231175 C = 4745.780440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 H 0.076 0.924 4 C 0.040 3.960 5 C -0.508 4.508 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.272 1.272 13 S -0.201 6.201 14 C -0.039 4.039 15 C 0.091 3.909 16 O -0.553 6.553 17 C -0.091 4.091 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.121 4.121 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.024 0.976 26 H 0.029 0.971 27 H 0.259 0.741 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.369 0.631 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 7.879 -15.595 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 H 0.094 0.906 4 C 0.002 3.998 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.197 1.197 13 S 0.031 5.969 14 C -0.149 4.149 15 C 0.011 3.989 16 O -0.357 6.357 17 C -0.130 4.130 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.159 4.159 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.215 0.785 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.959 6.781 -15.185 17.666 hybrid contribution -0.146 1.182 0.080 1.194 sum -6.105 7.963 -15.106 18.135 Atomic orbital electron populations 1.22220 0.95803 1.02133 1.00154 1.23501 0.95781 1.01756 0.97291 0.90618 1.18991 0.96417 0.95553 0.88848 1.21241 0.91601 1.34190 1.07612 0.91943 1.24983 0.98286 0.95411 0.95755 1.69961 1.35475 1.36387 1.12070 0.86608 0.86008 0.77345 0.78215 1.20874 1.21341 1.19661 1.87297 1.81670 1.28776 0.99139 1.22665 0.97150 0.97085 0.97959 1.22339 0.96267 0.82858 0.97405 1.86651 1.43029 1.24832 1.81142 1.21428 0.97031 0.99793 0.94718 1.21623 1.01450 0.94869 0.97710 1.21555 0.99086 0.96876 0.98241 1.21592 0.98466 0.99034 0.96493 1.22003 1.03519 0.92486 0.97908 0.92075 0.92681 0.93876 0.95781 0.95312 0.93116 0.93881 0.93525 0.78537 0.91027 0.90985 0.92035 0.91982 0.92337 0.91764 0.92144 0.91873 0.90637 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.71 37.16 0.32 -2.18 16 2 C -0.05 -1.14 1.94 -26.73 -0.05 -1.19 16 3 H 0.08 1.55 6.18 -51.92 -0.32 1.23 16 4 C 0.04 1.04 4.45 -27.88 -0.12 0.92 16 5 C -0.51 -14.48 8.53 -34.44 -0.29 -14.77 16 6 H 0.06 1.76 7.60 -52.48 -0.40 1.36 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 13 S -0.20 -4.13 18.98 -107.50 -2.04 -6.17 16 14 C -0.04 -0.59 0.52 -90.63 -0.05 -0.64 16 15 C 0.09 1.20 5.18 37.15 0.19 1.39 16 16 O -0.55 -7.70 12.64 -35.23 -0.45 -8.15 16 17 C -0.09 -1.30 4.67 -26.74 -0.12 -1.43 16 18 C -0.12 -1.30 5.65 -26.73 -0.15 -1.45 16 19 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 20 C -0.12 -1.26 5.65 -26.70 -0.15 -1.41 16 21 C -0.12 -1.67 3.33 -26.70 -0.09 -1.76 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.64 4.68 -51.93 -0.24 0.40 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.04 0.56 6.46 -51.93 -0.34 0.23 16 29 H 0.05 0.52 4.87 -51.93 -0.25 0.26 16 30 H 0.37 3.31 9.12 45.56 0.42 3.72 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 33 H 0.06 0.65 6.23 -51.93 -0.32 0.32 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.60 6.65 -51.93 -0.35 0.25 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.07 4.72 -51.93 -0.25 0.82 16 40 H 0.08 1.22 7.74 -51.93 -0.40 0.82 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -31.87 309.59 -8.68 -40.55 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.80 Total: 0.90 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -0.77 Total: -22.38 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.45 Total: -8.15 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -2.04 Total: -6.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.87 -8.68 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695878435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.332 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds