Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47716 * 2 1 4 4 C 1.53003 * 109.47305 * 120.00161 * 2 1 3 5 5 C 1.50702 * 109.47283 * 184.99796 * 4 2 1 6 6 H 1.08003 * 119.99512 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00149 * 179.72752 * 5 4 2 8 8 N 1.31514 * 119.99894 * 0.27242 * 7 5 4 9 9 Si 1.86800 * 120.00197 * 180.27597 * 7 5 4 10 10 H 1.48497 * 109.46979 * 89.99504 * 9 7 5 11 11 H 1.48492 * 109.47214 * 209.99977 * 9 7 5 12 12 H 1.48505 * 109.46981 * 329.99828 * 9 7 5 13 13 S 1.81399 * 109.46882 * 240.00020 * 2 1 3 14 14 C 1.81402 * 103.00182 * 72.26314 * 13 2 1 15 15 C 1.52993 * 109.46876 * 261.67264 * 14 13 2 16 16 O 1.42897 * 109.47252 * 309.51050 * 15 14 13 17 17 C 1.52996 * 109.47487 * 141.66509 * 14 13 2 18 18 C 1.52994 * 109.47183 * 179.97438 * 17 14 13 19 19 C 1.52999 * 109.47216 * 60.00585 * 18 17 14 20 20 C 1.53010 * 109.46968 * 299.99728 * 19 18 17 21 21 C 1.53000 * 109.46780 * 21.66762 * 14 13 2 22 22 H 1.09000 * 109.47252 * 181.95118 * 1 2 3 23 23 H 1.09005 * 109.46450 * 301.94252 * 1 2 3 24 24 H 1.08998 * 109.47049 * 61.94415 * 1 2 3 25 25 H 1.09001 * 109.47130 * 65.00050 * 4 2 1 26 26 H 1.08998 * 109.47189 * 305.00127 * 4 2 1 27 27 H 0.96998 * 120.00019 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.48054 * 69.51161 * 15 14 13 29 29 H 1.09003 * 109.47137 * 189.50975 * 15 14 13 30 30 H 0.96702 * 114.00403 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47316 * 300.00676 * 17 14 13 32 32 H 1.09004 * 109.46444 * 60.00256 * 17 14 13 33 33 H 1.09003 * 109.47325 * 300.00229 * 18 17 14 34 34 H 1.09001 * 109.47568 * 180.02562 * 18 17 14 35 35 H 1.09000 * 109.47449 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47617 * 59.99694 * 19 18 17 37 37 H 1.08996 * 109.46924 * 300.00390 * 20 19 18 38 38 H 1.08995 * 109.47001 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.47492 * 300.00230 * 21 14 13 40 40 H 1.08996 * 109.47580 * 60.00190 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5391 7 6 4.2300 -1.1884 2.3609 8 7 3.5761 -1.8327 3.3026 9 14 6.0910 -1.0500 2.4436 10 1 6.4633 0.1756 3.1950 11 1 6.6458 -2.2418 3.1342 12 1 6.6434 -0.9737 1.0672 13 16 2.1346 -0.8551 -1.4811 14 6 1.7629 0.3207 -2.8115 15 6 0.4581 -0.0842 -3.5002 16 8 0.5153 -1.4676 -3.8534 17 6 2.9024 0.3126 -3.8325 18 6 2.5886 1.3039 -4.9548 19 6 2.4400 2.7089 -4.3677 20 6 1.3005 2.7170 -3.3466 21 6 1.6148 1.7255 -2.2238 22 1 -0.3634 -1.0271 0.0350 23 1 -0.3632 0.5438 0.8721 24 1 -0.3633 0.4833 -0.9069 25 1 1.7517 -1.7716 1.2055 26 1 1.6054 -0.2618 2.1370 27 1 4.0601 -2.2357 4.0403 28 1 -0.3782 0.0831 -2.8214 29 1 0.3211 0.5152 -4.4002 30 1 -0.2804 -1.7940 -4.2956 31 1 3.8320 0.6010 -3.3418 32 1 3.0079 -0.6883 -4.2511 33 1 1.6591 1.0149 -5.4455 34 1 3.4001 1.2978 -5.6825 35 1 2.2160 3.4150 -5.1672 36 1 3.3695 2.9978 -3.8771 37 1 0.3711 2.4281 -3.8372 38 1 1.1944 3.7181 -2.9287 39 1 0.8030 1.7314 -1.4964 40 1 2.5443 2.0141 -1.7331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695878435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = -99.318668 kcal Electronic energy + Delta-G solvation = -18396.524669 eV Core-core repulsion = 15721.463080 eV Total energy + Delta-G solvation = -2675.061589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26015 -36.97046 -36.44233 -34.17188 -32.22027 -31.69008 -29.32689 -26.85537 -25.24160 -23.83583 -23.18430 -21.84807 -19.68187 -18.50824 -18.40903 -17.52359 -16.68124 -16.48525 -15.91154 -15.62603 -15.11879 -14.78162 -14.45780 -14.26153 -14.00965 -13.69851 -13.57888 -13.28929 -13.22099 -12.94280 -12.75338 -12.50974 -12.44018 -12.38510 -12.08239 -12.02260 -11.43771 -11.31250 -11.27235 -11.16324 -10.94696 -10.63075 -10.49183 -10.12472 -8.28778 -8.18880 -6.25882 0.99569 1.36676 1.38978 1.50397 1.99502 2.41289 3.15614 3.36054 3.67806 3.80429 4.07087 4.10180 4.17072 4.25762 4.27763 4.33993 4.43520 4.49819 4.55883 4.59958 4.67643 4.71108 4.88490 4.94672 5.01593 5.07475 5.12746 5.20170 5.23119 5.25078 5.33529 5.38104 5.42288 5.54250 5.54990 5.79054 6.22762 6.85694 7.04386 7.40671 8.93399 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.006405 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.716351 B = 4370.231175 C = 4745.780440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 H 0.077 0.923 4 C 0.046 3.954 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.268 1.268 13 S -0.281 6.281 14 C -0.020 4.020 15 C 0.094 3.906 16 O -0.578 6.578 17 C -0.090 4.090 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.120 4.120 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.073 0.927 25 H -0.011 1.011 26 H 0.008 0.992 27 H 0.262 0.738 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.390 0.610 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 9.852 -17.901 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 H 0.095 0.905 4 C 0.008 3.992 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.193 1.193 13 S -0.049 6.049 14 C -0.130 4.130 15 C 0.015 3.985 16 O -0.385 6.385 17 C -0.130 4.130 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.159 4.159 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.007 0.993 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.239 0.761 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.504 8.757 -17.497 20.618 hybrid contribution 0.012 0.553 0.729 0.915 sum -6.492 9.309 -16.768 20.248 Atomic orbital electron populations 1.22122 0.92983 1.02066 1.02157 1.23198 0.97942 1.00536 0.94972 0.90470 1.18805 0.95526 0.93906 0.90938 1.21541 0.92961 1.33849 1.07382 0.92262 1.25871 1.03322 0.95077 0.95427 1.70087 1.37425 1.37371 1.12762 0.85548 0.80000 0.77820 0.78363 1.19458 1.20852 1.19297 1.87433 1.82914 1.32353 1.02176 1.22805 0.98871 0.95901 0.95389 1.22339 0.94555 0.83107 0.98528 1.86607 1.44867 1.25379 1.81647 1.21415 0.96002 1.00020 0.95532 1.21599 1.02626 0.94210 0.96386 1.21574 0.98542 0.96750 0.98794 1.21599 0.99376 0.98628 0.95360 1.21982 1.02325 0.92450 0.99122 0.93098 0.91714 0.90809 0.99252 0.97362 0.92933 0.93478 0.90219 0.76068 0.93074 0.92718 0.90531 0.90779 0.89612 0.92764 0.90231 0.90437 0.90900 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.71 71.98 0.63 -3.99 16 2 C -0.04 -1.62 1.94 30.60 0.06 -1.56 16 3 H 0.08 3.22 6.18 -2.39 -0.01 3.20 16 4 C 0.05 2.52 4.45 29.85 0.13 2.65 16 5 C -0.52 -30.60 8.53 25.60 0.22 -30.38 16 6 H 0.06 3.45 7.60 -2.91 -0.02 3.43 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.94 -58.74 13.29 21.45 0.28 -58.45 16 9 Si 0.96 46.55 29.54 68.60 2.03 48.58 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 S -0.28 -11.81 18.98 -56.49 -1.07 -12.88 16 14 C -0.02 -0.58 0.52 -10.80 -0.01 -0.59 16 15 C 0.09 2.20 5.18 71.98 0.37 2.58 16 16 O -0.58 -15.07 12.64 -148.98 -1.88 -16.96 16 17 C -0.09 -2.51 4.67 30.59 0.14 -2.37 16 18 C -0.11 -2.06 5.65 30.59 0.17 -1.89 16 19 C -0.12 -2.00 5.92 30.60 0.18 -1.82 16 20 C -0.11 -1.95 5.65 30.62 0.17 -1.78 16 21 C -0.12 -3.12 3.33 30.61 0.10 -3.02 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.07 2.07 4.68 -2.39 -0.01 2.05 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.05 1.07 6.46 -2.38 -0.02 1.06 16 29 H 0.08 1.38 4.87 -2.39 -0.01 1.37 16 30 H 0.39 6.09 9.12 -74.06 -0.68 5.41 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.69 7.96 -2.38 -0.02 1.67 16 33 H 0.08 1.25 6.23 -2.39 -0.01 1.23 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.15 6.65 -2.39 -0.02 1.13 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.91 4.72 -2.38 -0.01 1.90 16 40 H 0.06 1.71 7.74 -2.39 -0.02 1.69 16 Total: -1.00 -71.74 309.59 2.34 -69.40 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.35 Total: 12.00 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 2.64 Total: -41.69 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.28 Total: -58.45 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -1.88 Total: -16.96 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: -11.81 SS G_CDS: -1.07 Total: -12.88 kcal Total: -71.74 2.34 -69.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695878435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.916 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds