Wall clock time and date at job start Mon Mar 30 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47154 * 2 1 4 4 C 1.53005 * 109.47042 * 239.99994 * 2 1 3 5 5 C 1.50705 * 109.46950 * 174.99936 * 4 2 1 6 6 H 1.07999 * 120.00028 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99593 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00333 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47300 * 59.99659 * 9 7 5 11 11 H 1.48498 * 109.47376 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46907 * 300.00006 * 9 7 5 13 13 S 1.81392 * 109.47383 * 119.99848 * 2 1 3 14 14 O 1.42105 * 109.47203 * 31.82503 * 13 2 1 15 15 C 1.81399 * 103.00110 * 275.43918 * 13 2 1 16 16 H 1.09000 * 109.47119 * 294.39819 * 15 13 2 17 17 C 1.52993 * 109.47485 * 54.40041 * 15 13 2 18 18 C 1.53001 * 109.47495 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.46738 * 300.00036 * 18 17 15 20 20 C 1.52995 * 109.47489 * 59.99921 * 19 18 17 21 21 H 1.09000 * 109.46969 * 59.99629 * 20 19 18 22 22 C 1.52998 * 109.47199 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.47034 * 174.40252 * 15 13 2 24 24 H 1.09000 * 109.47252 * 292.65745 * 1 2 3 25 25 H 1.09002 * 109.47220 * 52.65597 * 1 2 3 26 26 H 1.08996 * 109.47513 * 172.65724 * 1 2 3 27 27 H 1.09004 * 109.46859 * 294.99652 * 4 2 1 28 28 H 1.09001 * 109.47045 * 55.00324 * 4 2 1 29 29 H 0.97000 * 120.00239 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47035 * 300.00056 * 17 15 13 31 31 H 1.09000 * 109.47123 * 59.99781 * 17 15 13 32 32 H 1.08995 * 109.47342 * 179.97438 * 18 17 15 33 33 H 1.09000 * 109.47023 * 59.99980 * 18 17 15 34 34 H 1.09000 * 109.46815 * 299.99923 * 19 18 17 35 35 H 1.09002 * 109.46928 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.47003 * 179.97438 * 22 20 19 37 37 H 1.08995 * 109.47561 * 299.99873 * 22 20 19 38 38 H 1.09000 * 109.46783 * 60.00199 * 22 20 19 39 39 H 1.09000 * 109.47318 * 299.99594 * 23 15 13 40 40 H 1.08997 * 109.47732 * 59.99938 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2302 -1.1926 -2.3584 8 7 3.5762 -1.8369 -3.3001 9 14 6.0920 -1.0614 -2.4367 10 1 6.6838 -1.6884 -1.2276 11 1 6.5870 -1.7614 -3.6493 12 1 6.4853 0.3693 -2.4952 13 16 2.1346 -0.8550 1.4811 14 8 1.2193 -1.8799 1.8433 15 6 2.1127 0.4485 2.7424 16 1 2.8403 1.2175 2.4828 17 6 0.7162 1.0697 2.8097 18 6 0.6979 2.1696 3.8731 19 6 1.0551 1.5689 5.2342 20 6 2.4517 0.9477 5.1669 21 1 3.1791 1.7167 4.9069 22 6 2.8091 0.3477 6.5282 23 6 2.4697 -0.1527 4.1033 24 1 -0.3634 0.3959 0.9483 25 1 -0.3634 0.6234 -0.8170 26 1 -0.3634 -1.0192 -0.1313 27 1 1.7516 -1.7716 -1.2055 28 1 1.6053 -0.2617 -2.1370 29 1 4.0606 -2.2437 -4.0355 30 1 0.4619 1.4979 1.8401 31 1 -0.0114 0.3006 3.0693 32 1 -0.2969 2.6124 3.9208 33 1 1.4254 2.9385 3.6131 34 1 0.3276 0.8000 5.4942 35 1 1.0425 2.3525 5.9917 36 1 3.8039 -0.0953 6.4801 37 1 2.7962 1.1314 7.2855 38 1 2.0816 -0.4212 6.7886 39 1 1.7422 -0.9217 4.3630 40 1 3.4647 -0.5952 4.0554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695895629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:19 Heat of formation + Delta-G solvation = -80.049437 kcal Electronic energy + Delta-G solvation = -18125.968580 eV Core-core repulsion = 15451.742567 eV Total energy + Delta-G solvation = -2674.226013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.57616 -34.97756 -34.58303 -32.76740 -31.90479 -30.72386 -27.60719 -26.29145 -23.37253 -22.81371 -21.36827 -20.54250 -19.59727 -16.80760 -16.43762 -15.72314 -14.99676 -14.71792 -14.49618 -14.30823 -14.20716 -13.54512 -13.11986 -12.64182 -12.54640 -12.41042 -12.03228 -11.91169 -11.71687 -11.45999 -11.44090 -11.31300 -10.96463 -10.87901 -10.80362 -10.70095 -10.57378 -10.39208 -10.20727 -10.01817 -9.60328 -9.17590 -8.85070 -8.40045 -7.28819 -6.05949 -4.11415 2.27100 3.32025 3.37674 3.38247 3.42873 4.40758 4.47171 4.69089 4.73380 4.87670 5.15375 5.19439 5.30872 5.39705 5.46544 5.53996 5.62547 5.68950 5.70084 5.75695 5.80942 5.82728 5.94331 5.99071 6.00251 6.17045 6.19458 6.23676 6.28018 6.32921 6.42979 6.52231 6.70269 6.82770 7.56355 7.60030 7.89987 8.26685 8.94572 9.54314 11.04974 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.005866 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.490805 B = 4772.248677 C = 5300.315671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.386 4.386 3 H 0.103 0.897 4 C 0.050 3.950 5 C -0.533 4.533 6 H 0.066 0.934 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.275 1.275 13 S 1.258 4.742 14 O -0.860 6.860 15 C -0.425 4.425 16 H 0.116 0.884 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.087 4.087 21 H 0.071 0.929 22 C -0.148 4.148 23 C -0.088 4.088 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 7.249 14.634 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.505 4.505 3 H 0.122 0.878 4 C 0.011 3.989 5 C -0.572 4.572 6 H 0.084 0.916 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.201 1.201 13 S 1.458 4.542 14 O -0.856 6.856 15 C -0.540 4.540 16 H 0.134 0.866 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.107 4.107 21 H 0.089 0.911 22 C -0.206 4.206 23 C -0.127 4.127 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.402 6.172 14.582 15.839 hybrid contribution -1.075 0.996 -0.042 1.466 sum -1.476 7.168 14.540 16.278 Atomic orbital electron populations 1.21991 0.95288 1.02364 1.01095 1.27391 0.99919 1.09371 1.13823 0.87836 1.18821 0.95970 0.94850 0.89217 1.21230 0.91477 1.35430 1.09034 0.91606 1.25021 0.98571 0.94933 0.95508 1.69954 1.35931 1.35101 1.11905 0.86681 0.85437 0.78393 0.77758 1.19642 1.21357 1.20053 1.71337 1.15697 0.82028 0.85102 1.92955 1.68661 1.43315 1.80620 1.27844 1.01231 1.14587 1.10297 0.86550 1.21793 0.95720 0.98339 0.99617 1.21517 1.00838 0.97916 0.95069 1.21575 0.96870 0.99677 0.96919 1.21114 0.97045 0.97752 0.94756 0.91066 1.21846 1.01475 1.00645 0.96590 1.21226 1.01843 0.97439 0.92143 0.93174 0.92748 0.92390 0.96225 0.95458 0.92710 0.90813 0.92019 0.92583 0.91919 0.92339 0.92464 0.92512 0.92980 0.92855 0.91761 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.41 37.15 0.31 -2.50 16 2 C -0.39 -7.59 2.12 -26.73 -0.06 -7.64 16 3 H 0.10 1.85 8.13 -51.92 -0.42 1.43 16 4 C 0.05 1.22 4.44 -27.88 -0.12 1.10 16 5 C -0.53 -13.55 8.53 -34.44 -0.29 -13.85 16 6 H 0.07 1.49 7.60 -52.49 -0.40 1.09 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 9 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 S 1.26 22.81 11.68 -107.50 -1.26 21.55 16 14 O -0.86 -19.56 17.51 -35.23 -0.62 -20.18 16 15 C -0.42 -5.99 2.71 -26.73 -0.07 -6.06 16 16 H 0.12 1.43 8.14 -51.92 -0.42 1.01 16 17 C -0.12 -1.65 3.81 -26.73 -0.10 -1.75 16 18 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 19 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 20 C -0.09 -0.96 2.72 -90.60 -0.25 -1.20 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 23 C -0.09 -1.15 4.48 -26.70 -0.12 -1.27 16 24 H 0.05 0.84 4.72 -51.93 -0.25 0.60 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.07 1.04 5.45 -51.93 -0.28 0.76 16 31 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -30.88 320.61 -9.32 -40.20 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.24 Total: -0.93 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: -0.76 Total: -35.57 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.74 Total: -24.90 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.62 Total: -20.18 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 22.81 SS G_CDS: -1.26 Total: 21.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.88 -9.32 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.849 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds