Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47154 * 2 1 4 4 C 1.53005 * 109.47042 * 239.99994 * 2 1 3 5 5 C 1.50705 * 109.46950 * 174.99936 * 4 2 1 6 6 H 1.07999 * 120.00028 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99593 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00333 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47300 * 59.99659 * 9 7 5 11 11 H 1.48498 * 109.47376 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46907 * 300.00006 * 9 7 5 13 13 S 1.81392 * 109.47383 * 119.99848 * 2 1 3 14 14 O 1.42105 * 109.47203 * 31.82503 * 13 2 1 15 15 C 1.81399 * 103.00110 * 275.43918 * 13 2 1 16 16 H 1.09000 * 109.47119 * 294.39819 * 15 13 2 17 17 C 1.52993 * 109.47485 * 54.40041 * 15 13 2 18 18 C 1.53001 * 109.47495 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.46738 * 300.00036 * 18 17 15 20 20 C 1.52995 * 109.47489 * 59.99921 * 19 18 17 21 21 H 1.09000 * 109.46969 * 59.99629 * 20 19 18 22 22 C 1.52998 * 109.47199 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.47034 * 174.40252 * 15 13 2 24 24 H 1.09000 * 109.47252 * 292.65745 * 1 2 3 25 25 H 1.09002 * 109.47220 * 52.65597 * 1 2 3 26 26 H 1.08996 * 109.47513 * 172.65724 * 1 2 3 27 27 H 1.09004 * 109.46859 * 294.99652 * 4 2 1 28 28 H 1.09001 * 109.47045 * 55.00324 * 4 2 1 29 29 H 0.97000 * 120.00239 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47035 * 300.00056 * 17 15 13 31 31 H 1.09000 * 109.47123 * 59.99781 * 17 15 13 32 32 H 1.08995 * 109.47342 * 179.97438 * 18 17 15 33 33 H 1.09000 * 109.47023 * 59.99980 * 18 17 15 34 34 H 1.09000 * 109.46815 * 299.99923 * 19 18 17 35 35 H 1.09002 * 109.46928 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.47003 * 179.97438 * 22 20 19 37 37 H 1.08995 * 109.47561 * 299.99873 * 22 20 19 38 38 H 1.09000 * 109.46783 * 60.00199 * 22 20 19 39 39 H 1.09000 * 109.47318 * 299.99594 * 23 15 13 40 40 H 1.08997 * 109.47732 * 59.99938 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2302 -1.1926 -2.3584 8 7 3.5762 -1.8369 -3.3001 9 14 6.0920 -1.0614 -2.4367 10 1 6.6838 -1.6884 -1.2276 11 1 6.5870 -1.7614 -3.6493 12 1 6.4853 0.3693 -2.4952 13 16 2.1346 -0.8550 1.4811 14 8 1.2193 -1.8799 1.8433 15 6 2.1127 0.4485 2.7424 16 1 2.8403 1.2175 2.4828 17 6 0.7162 1.0697 2.8097 18 6 0.6979 2.1696 3.8731 19 6 1.0551 1.5689 5.2342 20 6 2.4517 0.9477 5.1669 21 1 3.1791 1.7167 4.9069 22 6 2.8091 0.3477 6.5282 23 6 2.4697 -0.1527 4.1033 24 1 -0.3634 0.3959 0.9483 25 1 -0.3634 0.6234 -0.8170 26 1 -0.3634 -1.0192 -0.1313 27 1 1.7516 -1.7716 -1.2055 28 1 1.6053 -0.2617 -2.1370 29 1 4.0606 -2.2437 -4.0355 30 1 0.4619 1.4979 1.8401 31 1 -0.0114 0.3006 3.0693 32 1 -0.2969 2.6124 3.9208 33 1 1.4254 2.9385 3.6131 34 1 0.3276 0.8000 5.4942 35 1 1.0425 2.3525 5.9917 36 1 3.8039 -0.0953 6.4801 37 1 2.7962 1.1314 7.2855 38 1 2.0816 -0.4212 6.7886 39 1 1.7422 -0.9217 4.3630 40 1 3.4647 -0.5952 4.0554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695895629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -98.444415 kcal Electronic energy + Delta-G solvation = -18126.766246 eV Core-core repulsion = 15451.742567 eV Total energy + Delta-G solvation = -2675.023679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.55209 -36.62965 -36.36639 -34.21494 -33.34819 -31.73055 -29.44181 -27.23972 -25.24787 -23.92567 -22.37236 -22.14168 -20.60683 -18.42490 -18.31669 -17.05380 -16.53691 -16.21060 -15.66749 -15.55150 -15.22731 -14.76011 -14.54102 -14.12727 -13.78671 -13.64878 -13.62347 -13.35535 -13.12912 -13.08505 -12.59760 -12.51376 -12.39166 -12.28938 -12.25600 -11.96915 -11.81619 -11.63077 -11.46357 -11.35996 -11.13296 -10.94336 -10.53480 -10.22799 -8.78499 -8.09075 -6.21617 0.80399 1.56174 1.59497 1.65734 1.99257 2.53530 3.01968 3.27193 3.71121 3.72907 3.98252 4.09947 4.13994 4.22028 4.25507 4.41729 4.43723 4.53011 4.59699 4.67082 4.80211 4.81996 4.85521 4.99170 5.00938 5.07844 5.08385 5.14796 5.18869 5.23266 5.32507 5.37689 5.44615 5.50957 5.56709 5.60793 5.87504 6.24491 6.95044 7.49677 9.03484 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.005866 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.490805 B = 4772.248677 C = 5300.315671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.383 4.383 3 H 0.131 0.869 4 C 0.054 3.946 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.001 4.001 8 N -0.941 5.941 9 Si 0.960 3.040 10 H -0.252 1.252 11 H -0.297 1.297 12 H -0.259 1.259 13 S 1.262 4.738 14 O -0.915 6.915 15 C -0.405 4.405 16 H 0.151 0.849 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.083 4.083 21 H 0.089 0.911 22 C -0.148 4.148 23 C -0.093 4.093 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.027 0.973 27 H -0.022 1.022 28 H -0.003 1.003 29 H 0.261 0.739 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 9.956 16.881 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.501 4.501 3 H 0.149 0.851 4 C 0.016 3.984 5 C -0.574 4.574 6 H 0.116 0.884 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.784 3.216 10 H -0.176 1.176 11 H -0.224 1.224 12 H -0.183 1.183 13 S 1.465 4.535 14 O -0.910 6.910 15 C -0.524 4.524 16 H 0.169 0.831 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.102 4.102 21 H 0.107 0.893 22 C -0.205 4.205 23 C -0.132 4.132 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.046 0.954 27 H -0.003 1.003 28 H 0.015 0.985 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.688 8.864 16.816 19.084 hybrid contribution -1.800 0.200 -0.659 1.927 sum -0.112 9.064 16.157 18.526 Atomic orbital electron populations 1.21972 0.95019 1.00877 1.02682 1.27273 1.00240 1.10193 1.12431 0.85110 1.18645 0.96430 0.92756 0.90604 1.21769 0.91771 1.34588 1.09309 0.88437 1.26058 1.04020 0.94620 0.95206 1.70140 1.38118 1.36925 1.12986 0.85557 0.78962 0.79124 0.77935 1.17577 1.22379 1.18338 1.70495 1.14676 0.82719 0.85602 1.92894 1.69577 1.46703 1.81876 1.27655 1.02544 1.13180 1.08982 0.83090 1.21809 0.94762 0.98618 1.00735 1.21514 1.01992 0.97165 0.94308 1.21609 0.96564 0.99894 0.97136 1.21116 0.97452 0.97181 0.94497 0.89302 1.21841 1.01558 1.00902 0.96192 1.21329 1.01932 0.97858 0.92088 0.90989 0.91827 0.95363 1.00335 0.98496 0.93024 0.90817 0.94659 0.91839 0.90157 0.93826 0.90373 0.91814 0.91418 0.93811 0.94344 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 8.41 71.98 0.60 -5.05 16 2 C -0.38 -15.00 2.12 30.59 0.06 -14.93 16 3 H 0.13 4.36 8.13 -2.39 -0.02 4.34 16 4 C 0.05 2.74 4.44 29.85 0.13 2.87 16 5 C -0.54 -27.09 8.53 25.60 0.22 -26.87 16 6 H 0.10 4.17 7.60 -2.91 -0.02 4.15 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.94 -55.97 13.29 21.45 0.28 -55.68 16 9 Si 0.96 40.30 29.54 68.60 2.03 42.33 16 10 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 11 H -0.30 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 S 1.26 45.27 11.68 -56.49 -0.66 44.61 16 14 O -0.91 -43.10 17.51 -148.98 -2.61 -45.71 16 15 C -0.41 -10.35 2.71 30.59 0.08 -10.27 16 16 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 17 C -0.12 -3.16 3.81 30.59 0.12 -3.05 16 18 C -0.11 -2.21 5.92 30.60 0.18 -2.03 16 19 C -0.11 -2.15 5.20 30.59 0.16 -1.99 16 20 C -0.08 -1.51 2.72 -10.78 -0.03 -1.54 16 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 22 C -0.15 -2.36 9.19 71.98 0.66 -1.70 16 23 C -0.09 -2.22 4.48 30.61 0.14 -2.08 16 24 H 0.07 2.41 4.72 -2.39 -0.01 2.40 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 27 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 28 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.07 1.91 5.45 -2.38 -0.01 1.89 16 31 H 0.03 1.10 7.99 -2.39 -0.02 1.08 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.08 320.61 2.81 -67.27 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.97 Total: 13.43 kcal Atomic # 6 Polarization: -69.05 SS G_CDS: 2.79 Total: -66.26 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.61 Total: -45.71 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 45.27 SS G_CDS: -0.66 Total: 44.61 kcal Total: -70.08 2.81 -67.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.175 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds