Wall clock time and date at job start Mon Mar 30 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 C 1.52999 * 109.47538 * 239.99462 * 2 1 3 5 5 C 1.50696 * 109.47125 * 174.99768 * 4 2 1 6 6 H 1.08004 * 120.00443 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99797 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99787 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99828 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47249 * 120.00195 * 9 7 5 12 12 H 1.48508 * 109.46645 * 239.99879 * 9 7 5 13 13 S 1.81407 * 109.46931 * 119.99552 * 2 1 3 14 14 O 1.42105 * 109.46770 * 187.97989 * 13 2 1 15 15 C 1.81400 * 102.99847 * 304.36380 * 13 2 1 16 16 H 1.09005 * 109.47178 * 63.66355 * 15 13 2 17 17 C 1.53008 * 109.46902 * 183.65832 * 15 13 2 18 18 C 1.52998 * 109.46977 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47362 * 300.00084 * 18 17 15 20 20 C 1.53003 * 109.47292 * 59.99713 * 19 18 17 21 21 H 1.09005 * 109.46453 * 60.00145 * 20 19 18 22 22 C 1.52996 * 109.47292 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.47342 * 303.65581 * 15 13 2 24 24 H 1.09004 * 109.46952 * 185.61642 * 1 2 3 25 25 H 1.09001 * 109.47151 * 305.61964 * 1 2 3 26 26 H 1.08997 * 109.47180 * 65.61884 * 1 2 3 27 27 H 1.08993 * 109.46933 * 295.00572 * 4 2 1 28 28 H 1.09000 * 109.46568 * 54.99843 * 4 2 1 29 29 H 0.97007 * 119.99462 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47097 * 59.99975 * 17 15 13 31 31 H 1.08999 * 109.46617 * 300.00023 * 17 15 13 32 32 H 1.08998 * 109.46993 * 179.97438 * 18 17 15 33 33 H 1.09004 * 109.47277 * 59.99906 * 18 17 15 34 34 H 1.09004 * 109.46780 * 300.00127 * 19 18 17 35 35 H 1.08996 * 109.47151 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46780 * 60.00414 * 22 20 19 37 37 H 1.08998 * 109.47216 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.47176 * 300.00575 * 22 20 19 39 39 H 1.09003 * 109.46781 * 60.00624 * 23 15 13 40 40 H 1.08994 * 109.47209 * 300.00363 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0791 -0.0860 -0.5391 7 6 4.2305 -1.1927 -2.3581 8 7 3.5764 -1.8363 -3.3003 9 14 6.0922 -1.0614 -2.4364 10 1 6.5838 -0.2918 -1.2655 11 1 6.6856 -2.4226 -2.4193 12 1 6.4871 -0.3649 -3.6872 13 16 2.1346 -0.8551 1.4813 14 8 3.5434 -0.6961 1.5780 15 6 1.3300 0.0500 2.8318 16 1 0.2494 -0.0726 2.7582 17 6 1.8153 -0.5001 4.1746 18 6 1.1362 0.2628 5.3137 19 6 1.4884 1.7483 5.2139 20 6 1.0032 2.2984 3.8711 21 1 -0.0774 2.1755 3.7973 22 6 1.3549 3.7841 3.7716 23 6 1.6829 1.5354 2.7318 24 1 -0.3633 -1.0228 0.1006 25 1 -0.3633 0.5985 0.8354 26 1 -0.3633 0.4242 -0.9360 27 1 1.7517 -1.7715 -1.2054 28 1 1.6054 -0.2619 -2.1369 29 1 4.0609 -2.2431 -4.0357 30 1 2.8958 -0.3776 4.2482 31 1 1.5639 -1.5583 4.2458 32 1 1.4815 -0.1294 6.2702 33 1 0.0556 0.1399 5.2399 34 1 2.5690 1.8712 5.2877 35 1 1.0050 2.2917 6.0257 36 1 2.4354 3.9074 3.8456 37 1 1.0089 4.1761 2.8152 38 1 0.8708 4.3273 4.5832 39 1 1.3371 1.9273 1.7752 40 1 2.7634 1.6578 2.8054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695895630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:23 Heat of formation + Delta-G solvation = -80.918118 kcal Electronic energy + Delta-G solvation = -18239.557404 eV Core-core repulsion = 15565.293723 eV Total energy + Delta-G solvation = -2674.263682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -38.55633 -34.76964 -34.51997 -32.56793 -32.06057 -30.68044 -27.35162 -26.40098 -23.28215 -22.62574 -21.66191 -20.31483 -19.70883 -16.54547 -16.31479 -15.60131 -15.05507 -14.59535 -14.47818 -14.24154 -14.16770 -13.59439 -13.14075 -12.74842 -12.41250 -12.36189 -11.94684 -11.81889 -11.68614 -11.50449 -11.35982 -11.27407 -10.96537 -10.80219 -10.71544 -10.54413 -10.48502 -10.43077 -10.32534 -10.06352 -9.52904 -9.06178 -8.64551 -8.28195 -7.33062 -5.96454 -3.97182 2.31251 3.37550 3.44626 3.46440 3.56686 4.55419 4.57047 4.71834 4.74439 4.88883 5.17955 5.21583 5.38593 5.41591 5.48004 5.54407 5.63895 5.69810 5.71140 5.73239 5.81445 5.85212 5.95478 5.98372 6.02716 6.15913 6.18813 6.25775 6.28817 6.34102 6.44889 6.53067 6.64292 6.86196 7.60897 7.62587 8.05951 8.40099 9.14267 9.69455 11.14633 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.005825 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.274284 B = 4805.950960 C = 4946.156043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.391 4.391 3 H 0.078 0.922 4 C 0.046 3.954 5 C -0.528 4.528 6 H 0.071 0.929 7 C 0.060 3.940 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.286 1.286 13 S 1.244 4.756 14 O -0.827 6.827 15 C -0.429 4.429 16 H 0.113 0.887 17 C -0.094 4.094 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.087 4.087 21 H 0.068 0.932 22 C -0.149 4.149 23 C -0.105 4.105 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.025 0.975 28 H 0.027 0.973 29 H 0.259 0.741 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 3.519 15.146 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.510 4.510 3 H 0.097 0.903 4 C 0.008 3.992 5 C -0.566 4.566 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.212 1.212 13 S 1.442 4.558 14 O -0.822 6.822 15 C -0.543 4.543 16 H 0.131 0.869 17 C -0.132 4.132 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.106 4.106 21 H 0.086 0.914 22 C -0.207 4.207 23 C -0.143 4.143 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.355 2.659 15.067 17.933 hybrid contribution 1.591 2.335 -0.295 2.841 sum -7.764 4.995 14.772 17.419 Atomic orbital electron populations 1.21535 0.93554 1.01717 1.01459 1.27344 1.00615 1.08827 1.14195 0.90337 1.18857 0.95924 0.95017 0.89405 1.21615 0.91906 1.34501 1.08610 0.91057 1.24945 0.98377 0.95161 0.95552 1.69973 1.35401 1.36301 1.12120 0.86564 0.86099 0.77939 0.77738 1.19531 1.20897 1.21225 1.70213 0.90844 1.09577 0.85169 1.93116 1.24786 1.81144 1.83156 1.27910 1.10010 1.04441 1.11898 0.86890 1.21156 1.00517 0.99121 0.92412 1.21487 1.00479 0.95176 0.97957 1.21577 1.01014 0.95859 0.96659 1.21116 0.99981 0.94358 0.95147 0.91358 1.21855 1.01509 0.95927 1.01373 1.21622 1.00836 0.93404 0.98445 0.91904 0.93525 0.92439 0.95633 0.95470 0.93132 0.91734 0.91251 0.92287 0.91981 0.92273 0.92505 0.92846 0.92733 0.92995 0.91653 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.82 37.16 0.33 -1.49 16 2 C -0.39 -7.59 2.15 -26.73 -0.06 -7.65 16 3 H 0.08 1.64 7.17 -51.93 -0.37 1.27 16 4 C 0.05 1.16 4.45 -27.89 -0.12 1.03 16 5 C -0.53 -15.46 8.23 -34.44 -0.28 -15.75 16 6 H 0.07 2.20 6.22 -52.48 -0.33 1.87 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.89 23.28 29.54 -169.99 -5.02 18.26 16 10 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 S 1.24 21.86 11.95 -107.50 -1.28 20.57 16 14 O -0.83 -20.02 16.05 -35.23 -0.57 -20.58 16 15 C -0.43 -5.74 2.04 -26.73 -0.05 -5.80 16 16 H 0.11 1.23 7.27 -51.92 -0.38 0.85 16 17 C -0.09 -1.16 5.21 -26.73 -0.14 -1.30 16 18 C -0.11 -1.17 5.92 -26.73 -0.16 -1.33 16 19 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 20 C -0.09 -1.02 2.72 -90.59 -0.25 -1.27 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 23 C -0.11 -1.52 4.28 -26.71 -0.11 -1.64 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.56 6.79 -51.93 -0.35 0.21 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.97 6.49 -51.93 -0.34 0.64 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -34.69 320.19 -9.30 -43.99 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -7.24 Total: -4.39 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: -0.74 Total: -36.19 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.57 Total: -20.58 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Atomic # 16 Polarization: 21.86 SS G_CDS: -1.28 Total: 20.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.69 -9.30 -43.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.932 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds