Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 C 1.52999 * 109.47538 * 239.99462 * 2 1 3 5 5 C 1.50696 * 109.47125 * 174.99768 * 4 2 1 6 6 H 1.08004 * 120.00443 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99797 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99787 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99828 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47249 * 120.00195 * 9 7 5 12 12 H 1.48508 * 109.46645 * 239.99879 * 9 7 5 13 13 S 1.81407 * 109.46931 * 119.99552 * 2 1 3 14 14 O 1.42105 * 109.46770 * 187.97989 * 13 2 1 15 15 C 1.81400 * 102.99847 * 304.36380 * 13 2 1 16 16 H 1.09005 * 109.47178 * 63.66355 * 15 13 2 17 17 C 1.53008 * 109.46902 * 183.65832 * 15 13 2 18 18 C 1.52998 * 109.46977 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47362 * 300.00084 * 18 17 15 20 20 C 1.53003 * 109.47292 * 59.99713 * 19 18 17 21 21 H 1.09005 * 109.46453 * 60.00145 * 20 19 18 22 22 C 1.52996 * 109.47292 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.47342 * 303.65581 * 15 13 2 24 24 H 1.09004 * 109.46952 * 185.61642 * 1 2 3 25 25 H 1.09001 * 109.47151 * 305.61964 * 1 2 3 26 26 H 1.08997 * 109.47180 * 65.61884 * 1 2 3 27 27 H 1.08993 * 109.46933 * 295.00572 * 4 2 1 28 28 H 1.09000 * 109.46568 * 54.99843 * 4 2 1 29 29 H 0.97007 * 119.99462 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47097 * 59.99975 * 17 15 13 31 31 H 1.08999 * 109.46617 * 300.00023 * 17 15 13 32 32 H 1.08998 * 109.46993 * 179.97438 * 18 17 15 33 33 H 1.09004 * 109.47277 * 59.99906 * 18 17 15 34 34 H 1.09004 * 109.46780 * 300.00127 * 19 18 17 35 35 H 1.08996 * 109.47151 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46780 * 60.00414 * 22 20 19 37 37 H 1.08998 * 109.47216 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.47176 * 300.00575 * 22 20 19 39 39 H 1.09003 * 109.46781 * 60.00624 * 23 15 13 40 40 H 1.08994 * 109.47209 * 300.00363 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0791 -0.0860 -0.5391 7 6 4.2305 -1.1927 -2.3581 8 7 3.5764 -1.8363 -3.3003 9 14 6.0922 -1.0614 -2.4364 10 1 6.5838 -0.2918 -1.2655 11 1 6.6856 -2.4226 -2.4193 12 1 6.4871 -0.3649 -3.6872 13 16 2.1346 -0.8551 1.4813 14 8 3.5434 -0.6961 1.5780 15 6 1.3300 0.0500 2.8318 16 1 0.2494 -0.0726 2.7582 17 6 1.8153 -0.5001 4.1746 18 6 1.1362 0.2628 5.3137 19 6 1.4884 1.7483 5.2139 20 6 1.0032 2.2984 3.8711 21 1 -0.0774 2.1755 3.7973 22 6 1.3549 3.7841 3.7716 23 6 1.6829 1.5354 2.7318 24 1 -0.3633 -1.0228 0.1006 25 1 -0.3633 0.5985 0.8354 26 1 -0.3633 0.4242 -0.9360 27 1 1.7517 -1.7715 -1.2054 28 1 1.6054 -0.2619 -2.1369 29 1 4.0609 -2.2431 -4.0357 30 1 2.8958 -0.3776 4.2482 31 1 1.5639 -1.5583 4.2458 32 1 1.4815 -0.1294 6.2702 33 1 0.0556 0.1399 5.2399 34 1 2.5690 1.8712 5.2877 35 1 1.0050 2.2917 6.0257 36 1 2.4354 3.9074 3.8456 37 1 1.0089 4.1761 2.8152 38 1 0.8708 4.3273 4.5832 39 1 1.3371 1.9273 1.7752 40 1 2.7634 1.6578 2.8054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695895630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = -103.240735 kcal Electronic energy + Delta-G solvation = -18240.525386 eV Core-core repulsion = 15565.293723 eV Total energy + Delta-G solvation = -2675.231663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.54753 -36.48273 -36.34081 -34.05956 -33.51902 -31.78364 -29.20759 -27.35849 -25.20554 -23.66804 -22.90189 -21.76772 -20.69543 -18.56414 -18.01798 -16.92355 -16.60228 -16.26030 -15.62056 -15.53552 -15.18540 -15.08669 -14.35485 -14.15606 -14.04240 -13.47278 -13.41417 -13.32298 -13.22229 -12.79394 -12.71522 -12.66686 -12.48980 -12.40252 -12.23369 -12.01568 -11.80583 -11.76604 -11.42402 -11.30921 -11.11277 -10.99262 -10.65991 -10.13030 -8.84142 -8.25377 -6.31338 0.88808 1.26406 1.28310 1.43614 2.05564 2.36180 3.05457 3.21568 3.71466 3.71861 3.94465 4.15694 4.21810 4.27194 4.40637 4.43028 4.55948 4.58286 4.64671 4.71938 4.73658 4.81235 4.91071 5.03099 5.10827 5.12602 5.17035 5.21241 5.26997 5.31314 5.36382 5.38643 5.41827 5.50248 5.58601 5.61474 5.79657 6.20498 6.85027 7.37502 8.85654 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.005825 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.274284 B = 4805.950960 C = 4946.156043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.387 4.387 3 H 0.053 0.947 4 C 0.048 3.952 5 C -0.544 4.544 6 H 0.046 0.954 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.941 3.059 10 H -0.288 1.288 11 H -0.269 1.269 12 H -0.270 1.270 13 S 1.264 4.736 14 O -0.905 6.905 15 C -0.405 4.405 16 H 0.160 0.840 17 C -0.100 4.100 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.082 4.082 21 H 0.093 0.907 22 C -0.151 4.151 23 C -0.109 4.109 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.003 0.997 29 H 0.265 0.735 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 3.484 17.085 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.505 4.505 3 H 0.072 0.928 4 C 0.010 3.990 5 C -0.582 4.582 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.767 3.233 10 H -0.213 1.213 11 H -0.194 1.194 12 H -0.195 1.195 13 S 1.467 4.533 14 O -0.901 6.901 15 C -0.523 4.523 16 H 0.178 0.822 17 C -0.139 4.139 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.101 4.101 21 H 0.111 0.889 22 C -0.208 4.208 23 C -0.147 4.147 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.907 2.604 16.954 20.880 hybrid contribution 2.345 2.412 -0.806 3.459 sum -9.562 5.016 16.148 19.425 Atomic orbital electron populations 1.21590 0.89217 1.04373 1.02777 1.27232 1.04273 1.06469 1.12557 0.92809 1.18729 0.93523 0.95367 0.91400 1.21862 0.94351 1.34099 1.07912 0.93529 1.25644 1.02295 0.95151 0.95496 1.70028 1.36799 1.36863 1.12549 0.85763 0.81655 0.78398 0.77457 1.21322 1.19396 1.19528 1.69079 0.88679 1.10100 0.85437 1.93011 1.28971 1.83358 1.84711 1.27703 1.11718 1.02931 1.09951 0.82205 1.21278 0.98829 1.01255 0.92505 1.21492 1.01741 0.93974 0.97330 1.21621 0.99937 0.96918 0.96888 1.21127 1.00886 0.94015 0.94106 0.88856 1.21872 1.00687 0.96088 1.02161 1.21641 0.98668 0.94695 0.99715 0.89004 0.89956 0.93030 0.95785 0.97851 0.92600 0.95131 0.88639 0.90887 0.89305 0.94486 0.90177 0.94520 0.92963 0.90787 0.92344 0.95985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 8.82 71.98 0.63 -2.60 16 2 C -0.39 -15.17 2.15 30.59 0.07 -15.10 16 3 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 4 C 0.05 2.48 4.45 29.85 0.13 2.61 16 5 C -0.54 -33.22 8.23 25.60 0.21 -33.01 16 6 H 0.05 3.04 6.22 -2.91 -0.02 3.02 16 7 C 0.01 0.77 5.46 84.66 0.46 1.23 16 8 N -0.92 -56.74 13.29 21.45 0.28 -56.46 16 9 Si 0.94 49.00 29.54 68.60 2.03 51.02 16 10 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 11 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 13 S 1.26 44.73 11.95 -56.49 -0.67 44.06 16 14 O -0.90 -46.35 16.05 -148.98 -2.39 -48.74 16 15 C -0.41 -9.91 2.04 30.60 0.06 -9.85 16 16 H 0.16 2.54 7.27 -2.39 -0.02 2.53 16 17 C -0.10 -2.25 5.21 30.60 0.16 -2.09 16 18 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 19 C -0.12 -2.22 5.20 30.59 0.16 -2.06 16 20 C -0.08 -1.70 2.72 -10.78 -0.03 -1.73 16 21 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 22 C -0.15 -3.10 9.19 71.98 0.66 -2.44 16 23 C -0.11 -3.07 4.28 30.61 0.13 -2.94 16 24 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.08 1.61 6.79 -2.39 -0.02 1.60 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.06 1.71 6.49 -2.39 -0.02 1.69 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -80.46 320.19 3.05 -77.40 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 0.97 Total: 2.32 kcal Atomic # 6 Polarization: -72.44 SS G_CDS: 2.83 Total: -69.61 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -2.39 Total: -48.74 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.02 kcal Atomic # 16 Polarization: 44.73 SS G_CDS: -0.67 Total: 44.06 kcal Total: -80.46 3.05 -77.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.837 kcal (2) G-P(sol) polarization free energy of solvation -80.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds