Wall clock time and date at job start Mon Mar 30 2020 07:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86797 * 120.00320 * 2 1 4 4 H 1.48501 * 109.47261 * 272.81925 * 3 2 1 5 5 H 1.48506 * 109.47277 * 32.81593 * 3 2 1 6 6 H 1.48495 * 109.47125 * 152.81634 * 3 2 1 7 7 C 1.39883 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00678 * 332.46563 * 7 2 1 9 9 C 1.41033 * 119.99985 * 152.46390 * 7 2 1 10 10 C 1.40667 * 120.26586 * 139.32474 * 9 7 2 11 11 C 1.38007 * 119.76667 * 180.02562 * 10 9 7 12 12 N 1.39852 * 119.83997 * 179.97438 * 11 10 9 13 13 C 1.46505 * 119.99833 * 135.41209 * 12 11 10 14 14 C 1.53002 * 115.54682 * 148.27842 * 13 12 11 15 15 C 1.53004 * 117.49891 * 34.33070 * 14 13 12 16 16 C 1.53001 * 117.49839 * 325.67416 * 14 13 12 17 17 C 1.52991 * 117.49855 * 2.57558 * 13 12 11 18 18 C 1.52997 * 117.49889 * 293.95174 * 13 12 11 19 19 C 1.39604 * 120.32067 * 0.02562 * 11 10 9 20 20 C 1.38055 * 120.55148 * 359.97438 * 19 11 10 21 21 C 1.38741 * 120.21934 * 0.02562 * 20 19 11 22 22 N 1.38862 * 120.16198 * 180.02562 * 21 20 19 23 23 H 0.97002 * 119.99780 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.11849 * 0.02562 * 10 9 7 25 25 H 0.97000 * 120.00294 * 315.42488 * 12 11 10 26 26 H 1.08993 * 115.54817 * 180.02562 * 14 13 12 27 27 H 1.09005 * 117.49720 * 0.02562 * 15 14 13 28 28 H 1.09003 * 117.49509 * 145.01633 * 15 14 13 29 29 H 1.09004 * 117.49505 * 214.97926 * 16 14 13 30 30 H 1.08995 * 117.50179 * 359.97438 * 16 14 13 31 31 H 1.09007 * 117.50071 * 359.97438 * 17 13 12 32 32 H 1.08995 * 117.50187 * 145.01761 * 17 13 12 33 33 H 1.09002 * 117.49152 * 214.98058 * 18 13 12 34 34 H 1.08996 * 117.50177 * 359.97438 * 18 13 12 35 35 H 1.08000 * 119.72378 * 179.71808 * 19 11 10 36 36 H 1.07994 * 119.89154 * 180.02562 * 20 19 11 37 37 H 0.96996 * 119.99910 * 167.33936 * 22 21 20 38 38 H 0.97003 * 120.00120 * 347.34175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4310 2.0808 -1.3984 5 1 1.4716 2.6348 0.7588 6 1 3.5691 1.4236 0.6396 7 6 2.0083 -1.2115 0.0005 8 1 1.5601 -2.0936 0.4333 9 6 3.2988 -1.2810 -0.5641 10 6 4.3098 -2.0278 0.0675 11 6 5.5691 -2.0883 -0.4937 12 7 6.5755 -2.8300 0.1332 13 6 7.4385 -3.7098 -0.6589 14 6 8.8695 -3.8705 -0.1417 15 6 9.0790 -3.8529 1.3738 16 6 9.5198 -2.6572 0.5260 17 6 7.2284 -3.7279 -2.1742 18 6 6.7881 -4.9231 -1.3265 19 6 5.8436 -1.4120 -1.6837 20 6 4.8613 -0.6752 -2.3148 21 6 3.5875 -0.5988 -1.7704 22 7 2.6002 0.1422 -2.4064 23 1 -0.4850 0.8401 0.0004 24 1 4.1012 -2.5520 0.9885 25 1 6.7020 -2.7620 1.0925 26 1 9.5117 -4.5247 -0.7312 27 1 8.1974 -3.7273 2.0024 28 1 9.8593 -4.4958 1.7815 29 1 10.5899 -2.5137 0.3762 30 1 8.9284 -1.7443 0.5964 31 1 6.4477 -3.0855 -2.5818 32 1 8.1096 -3.8543 -2.8031 33 1 7.3798 -5.8357 -1.3975 34 1 5.7182 -5.0670 -1.1761 35 1 6.8337 -1.4622 -2.1121 36 1 5.0853 -0.1565 -3.2351 37 1 1.6737 0.0501 -2.1345 38 1 2.8371 0.7520 -3.1226 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697401626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:24 Heat of formation + Delta-G solvation = 95.486158 kcal Electronic energy + Delta-G solvation = -19159.011469 eV Core-core repulsion = 16389.246051 eV Total energy + Delta-G solvation = -2769.765418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.30733 -37.76449 -35.47754 -33.90725 -32.87157 -31.04241 -30.22959 -26.51720 -25.03789 -23.34295 -22.48392 -21.85250 -20.73838 -20.48653 -18.86115 -17.67038 -16.37762 -15.86746 -15.71128 -15.12103 -15.06584 -14.29994 -13.81708 -13.34845 -13.01522 -12.66169 -12.58211 -12.23243 -11.97655 -11.70022 -11.55242 -11.41142 -11.17231 -10.91133 -10.81050 -10.60828 -10.43883 -10.16560 -9.93754 -9.66280 -9.59980 -8.98778 -8.79045 -7.63005 -7.43919 -6.78638 -5.92615 -4.19590 2.68407 2.94799 3.27619 3.29951 3.42381 3.69191 4.12339 4.14058 4.44150 4.61354 4.61424 4.94472 5.06138 5.24756 5.29122 5.46532 5.52278 5.60805 5.65996 5.78357 6.01883 6.04670 6.13803 6.16915 6.22717 6.34526 6.44391 6.64488 6.77732 6.93488 7.08695 7.37306 7.47202 7.65087 7.73869 7.92269 8.42576 8.44894 8.66725 8.68932 8.89447 9.04091 9.13313 10.24139 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.031669 B = 0.005679 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.942603 B = 4929.449477 C = 5053.179429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.084 3.916 3 Si 0.910 3.090 4 H -0.255 1.255 5 H -0.302 1.302 6 H -0.261 1.261 7 C -0.478 4.478 8 H 0.085 0.915 9 C 0.062 3.938 10 C -0.207 4.207 11 C 0.160 3.840 12 N -0.739 5.739 13 C 0.161 3.839 14 C -0.118 4.118 15 C -0.179 4.179 16 C -0.173 4.173 17 C -0.195 4.195 18 C -0.199 4.199 19 C -0.212 4.212 20 C -0.161 4.161 21 C 0.111 3.889 22 N -0.885 5.885 23 H 0.279 0.721 24 H 0.098 0.902 25 H 0.389 0.611 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.400 0.600 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.199 -3.298 -1.712 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.132 4.132 3 Si 0.736 3.264 4 H -0.179 1.179 5 H -0.230 1.230 6 H -0.185 1.185 7 C -0.509 4.509 8 H 0.102 0.898 9 C 0.057 3.943 10 C -0.231 4.231 11 C 0.064 3.936 12 N -0.377 5.377 13 C 0.071 3.929 14 C -0.137 4.137 15 C -0.216 4.216 16 C -0.210 4.210 17 C -0.232 4.232 18 C -0.239 4.239 19 C -0.234 4.234 20 C -0.185 4.185 21 C 0.009 3.991 22 N -0.431 5.431 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.224 0.776 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.233 0.767 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 12.980 -3.285 -1.800 13.509 hybrid contribution 0.025 0.834 0.189 0.855 sum 13.005 -2.451 -1.611 13.332 Atomic orbital electron populations 1.69883 1.08080 1.29618 1.37254 1.26009 0.94362 1.01413 0.91396 0.86597 0.80630 0.80044 0.79145 1.17931 1.22978 1.18475 1.18950 0.97820 0.97281 1.36823 0.89750 1.17200 0.93213 0.93999 0.89908 1.20796 0.90629 1.09755 1.01877 1.17215 0.87452 0.94193 0.94758 1.43430 1.36876 1.49866 1.07482 1.19457 0.88224 0.94178 0.91027 1.21822 0.94709 1.02055 0.95124 1.22910 1.03176 1.02009 0.93486 1.22950 1.00382 0.93621 1.04031 1.23909 1.04066 1.02296 0.92972 1.23484 1.01596 0.92874 1.05929 1.20238 0.98301 1.04754 1.00111 1.19989 0.93228 1.04866 1.00448 1.17962 0.89054 0.99384 0.92700 1.42531 1.08931 1.49085 1.42545 0.91119 0.88338 0.77575 0.87372 0.88763 0.89028 0.89189 0.88118 0.85665 0.89514 0.89709 0.88757 0.88087 0.88917 0.76746 0.79598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.80 13.93 55.54 0.77 -21.03 16 2 C 0.08 2.18 3.68 -17.33 -0.06 2.12 16 3 Si 0.91 21.14 24.98 -169.99 -4.25 16.89 16 4 H -0.25 -5.50 5.97 56.52 0.34 -5.16 16 5 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.48 -13.01 9.15 -37.91 -0.35 -13.36 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.06 1.58 4.71 -106.66 -0.50 1.08 16 10 C -0.21 -4.86 9.69 -38.75 -0.38 -5.24 16 11 C 0.16 3.32 5.94 -83.77 -0.50 2.82 16 12 N -0.74 -12.72 4.98 -45.99 -0.23 -12.95 16 13 C 0.16 2.41 2.91 -131.82 -0.38 2.02 16 14 C -0.12 -1.43 5.85 -90.62 -0.53 -1.96 16 15 C -0.18 -1.96 9.91 -26.69 -0.26 -2.23 16 16 C -0.17 -2.00 10.01 -26.69 -0.27 -2.26 16 17 C -0.20 -2.94 8.37 -26.74 -0.22 -3.17 16 18 C -0.20 -2.96 10.10 -26.73 -0.27 -3.23 16 19 C -0.21 -4.32 7.14 -39.14 -0.28 -4.60 16 20 C -0.16 -3.42 9.88 -39.46 -0.39 -3.81 16 21 C 0.11 2.59 5.44 -83.23 -0.45 2.14 16 22 N -0.88 -19.04 5.81 32.75 0.19 -18.85 16 23 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 24 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 25 H 0.39 6.29 7.34 -40.82 -0.30 5.99 16 26 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.09 1.09 6.92 -51.93 -0.36 0.73 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.34 7.87 -51.93 -0.41 0.93 16 31 H 0.13 2.18 4.70 -51.93 -0.24 1.94 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.10 1.90 6.32 -52.49 -0.33 1.56 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.40 9.15 5.78 -40.82 -0.24 8.92 16 38 H 0.38 6.99 8.77 -40.82 -0.36 6.63 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -27.26 301.66 -9.05 -36.32 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -5.24 Total: 24.76 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -4.85 Total: -29.68 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.74 Total: -52.83 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.25 Total: 16.89 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.26 -9.05 -36.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697401626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.802 kcal (2) G-P(sol) polarization free energy of solvation -27.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds