Wall clock time and date at job start Mon Mar 30 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86797 * 120.00320 * 2 1 4 4 H 1.48501 * 109.47261 * 272.81925 * 3 2 1 5 5 H 1.48506 * 109.47277 * 32.81593 * 3 2 1 6 6 H 1.48495 * 109.47125 * 152.81634 * 3 2 1 7 7 C 1.39883 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00678 * 332.46563 * 7 2 1 9 9 C 1.41033 * 119.99985 * 152.46390 * 7 2 1 10 10 C 1.40667 * 120.26586 * 139.32474 * 9 7 2 11 11 C 1.38007 * 119.76667 * 180.02562 * 10 9 7 12 12 N 1.39852 * 119.83997 * 179.97438 * 11 10 9 13 13 C 1.46505 * 119.99833 * 135.41209 * 12 11 10 14 14 C 1.53002 * 115.54682 * 148.27842 * 13 12 11 15 15 C 1.53004 * 117.49891 * 34.33070 * 14 13 12 16 16 C 1.53001 * 117.49839 * 325.67416 * 14 13 12 17 17 C 1.52991 * 117.49855 * 2.57558 * 13 12 11 18 18 C 1.52997 * 117.49889 * 293.95174 * 13 12 11 19 19 C 1.39604 * 120.32067 * 0.02562 * 11 10 9 20 20 C 1.38055 * 120.55148 * 359.97438 * 19 11 10 21 21 C 1.38741 * 120.21934 * 0.02562 * 20 19 11 22 22 N 1.38862 * 120.16198 * 180.02562 * 21 20 19 23 23 H 0.97002 * 119.99780 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.11849 * 0.02562 * 10 9 7 25 25 H 0.97000 * 120.00294 * 315.42488 * 12 11 10 26 26 H 1.08993 * 115.54817 * 180.02562 * 14 13 12 27 27 H 1.09005 * 117.49720 * 0.02562 * 15 14 13 28 28 H 1.09003 * 117.49509 * 145.01633 * 15 14 13 29 29 H 1.09004 * 117.49505 * 214.97926 * 16 14 13 30 30 H 1.08995 * 117.50179 * 359.97438 * 16 14 13 31 31 H 1.09007 * 117.50071 * 359.97438 * 17 13 12 32 32 H 1.08995 * 117.50187 * 145.01761 * 17 13 12 33 33 H 1.09002 * 117.49152 * 214.98058 * 18 13 12 34 34 H 1.08996 * 117.50177 * 359.97438 * 18 13 12 35 35 H 1.08000 * 119.72378 * 179.71808 * 19 11 10 36 36 H 1.07994 * 119.89154 * 180.02562 * 20 19 11 37 37 H 0.96996 * 119.99910 * 167.33936 * 22 21 20 38 38 H 0.97003 * 120.00120 * 347.34175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4310 2.0808 -1.3984 5 1 1.4716 2.6348 0.7588 6 1 3.5691 1.4236 0.6396 7 6 2.0083 -1.2115 0.0005 8 1 1.5601 -2.0936 0.4333 9 6 3.2988 -1.2810 -0.5641 10 6 4.3098 -2.0278 0.0675 11 6 5.5691 -2.0883 -0.4937 12 7 6.5755 -2.8300 0.1332 13 6 7.4385 -3.7098 -0.6589 14 6 8.8695 -3.8705 -0.1417 15 6 9.0790 -3.8529 1.3738 16 6 9.5198 -2.6572 0.5260 17 6 7.2284 -3.7279 -2.1742 18 6 6.7881 -4.9231 -1.3265 19 6 5.8436 -1.4120 -1.6837 20 6 4.8613 -0.6752 -2.3148 21 6 3.5875 -0.5988 -1.7704 22 7 2.6002 0.1422 -2.4064 23 1 -0.4850 0.8401 0.0004 24 1 4.1012 -2.5520 0.9885 25 1 6.7020 -2.7620 1.0925 26 1 9.5117 -4.5247 -0.7312 27 1 8.1974 -3.7273 2.0024 28 1 9.8593 -4.4958 1.7815 29 1 10.5899 -2.5137 0.3762 30 1 8.9284 -1.7443 0.5964 31 1 6.4477 -3.0855 -2.5818 32 1 8.1096 -3.8543 -2.8031 33 1 7.3798 -5.8357 -1.3975 34 1 5.7182 -5.0670 -1.1761 35 1 6.8337 -1.4622 -2.1121 36 1 5.0853 -0.1565 -3.2351 37 1 1.6737 0.0501 -2.1345 38 1 2.8371 0.7520 -3.1226 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697401626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:23 Heat of formation + Delta-G solvation = 79.459969 kcal Electronic energy + Delta-G solvation = -19159.706417 eV Core-core repulsion = 16389.246051 eV Total energy + Delta-G solvation = -2770.460366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68391 -39.29746 -36.69868 -35.46161 -34.69159 -32.61256 -32.06632 -28.22636 -26.83863 -24.43028 -23.60404 -22.97530 -22.39205 -22.10806 -20.22362 -19.43639 -17.72164 -17.47227 -17.35268 -16.88099 -16.31576 -15.86666 -15.09571 -14.81855 -14.55035 -14.34762 -14.29526 -13.95468 -13.45053 -13.26861 -12.96396 -12.78293 -12.54310 -12.30686 -12.20328 -12.11141 -11.94312 -11.66796 -11.44009 -11.19433 -10.84049 -10.69349 -10.33747 -9.31875 -9.09242 -8.74772 -7.61928 -6.20250 0.87203 1.17872 1.38854 1.46923 1.53992 2.22998 2.63716 2.72848 2.79154 3.37179 3.54942 3.60009 3.66577 3.97403 4.09008 4.24885 4.40671 4.47053 4.50677 4.66803 4.75979 4.86064 4.87872 4.99454 5.08911 5.14417 5.18189 5.26109 5.31889 5.35104 5.40644 5.59448 5.70922 5.89552 6.02299 6.09331 6.37869 6.77258 6.89356 6.94841 7.12433 7.26937 7.45946 8.33662 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.031669 B = 0.005679 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.942603 B = 4929.449477 C = 5053.179429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.059 3.941 3 Si 0.962 3.038 4 H -0.224 1.224 5 H -0.297 1.297 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.040 0.960 9 C 0.032 3.968 10 C -0.221 4.221 11 C 0.163 3.837 12 N -0.738 5.738 13 C 0.154 3.846 14 C -0.121 4.121 15 C -0.174 4.174 16 C -0.171 4.171 17 C -0.195 4.195 18 C -0.201 4.201 19 C -0.193 4.193 20 C -0.159 4.159 21 C 0.100 3.900 22 N -0.881 5.881 23 H 0.287 0.713 24 H 0.086 0.914 25 H 0.393 0.607 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.393 0.607 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.748 -2.912 -3.161 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.154 4.154 3 Si 0.786 3.214 4 H -0.147 1.147 5 H -0.224 1.224 6 H -0.209 1.209 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.244 4.244 11 C 0.065 3.935 12 N -0.375 5.375 13 C 0.065 3.935 14 C -0.139 4.139 15 C -0.211 4.211 16 C -0.208 4.208 17 C -0.232 4.232 18 C -0.240 4.240 19 C -0.215 4.215 20 C -0.183 4.183 21 C -0.003 4.003 22 N -0.428 5.428 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.229 0.771 26 H 0.150 0.850 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.224 0.776 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 16.550 -2.907 -3.273 17.119 hybrid contribution -0.921 0.543 0.630 1.241 sum 15.628 -2.364 -2.643 16.026 Atomic orbital electron populations 1.69899 1.09099 1.30730 1.39033 1.26505 0.94772 1.03311 0.90764 0.85808 0.78075 0.77044 0.80459 1.14749 1.22443 1.20940 1.18869 0.99509 0.96648 1.39220 0.94185 1.17313 0.92860 0.95998 0.91196 1.20921 0.91930 1.09663 1.01928 1.17232 0.87194 0.94147 0.94901 1.43467 1.36295 1.49717 1.08001 1.19786 0.89365 0.93438 0.90895 1.21851 0.92937 1.03078 0.96079 1.22984 1.03336 1.02038 0.92746 1.22957 1.01245 0.92684 1.03937 1.23887 1.04399 1.01703 0.93230 1.23470 1.00349 0.94142 1.06071 1.20593 0.99200 1.02610 0.99113 1.20372 0.92225 1.04413 1.01312 1.18073 0.90299 0.99592 0.92306 1.42469 1.08231 1.49232 1.42839 0.90282 0.89578 0.77113 0.85003 0.89928 0.86789 0.87047 0.90159 0.88077 0.86594 0.86958 0.91689 0.85533 0.85684 0.77577 0.77675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.29 13.93 21.82 0.30 -46.99 16 2 C 0.06 3.16 3.68 85.23 0.31 3.47 16 3 Si 0.96 43.91 24.98 68.60 1.71 45.63 16 4 H -0.22 -9.04 5.97 99.48 0.59 -8.45 16 5 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.51 -29.51 9.15 23.35 0.21 -29.29 16 8 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 9 C 0.03 1.66 4.71 -21.18 -0.10 1.56 16 10 C -0.22 -10.72 9.69 22.81 0.22 -10.50 16 11 C 0.16 6.66 5.94 38.14 0.23 6.89 16 12 N -0.74 -24.57 4.98 -299.43 -1.49 -26.06 16 13 C 0.15 4.21 2.91 3.60 0.01 4.22 16 14 C -0.12 -2.48 5.85 -10.79 -0.06 -2.54 16 15 C -0.17 -3.28 9.91 30.62 0.30 -2.98 16 16 C -0.17 -3.38 10.01 30.62 0.31 -3.07 16 17 C -0.19 -5.28 8.37 30.59 0.26 -5.02 16 18 C -0.20 -5.55 10.10 30.59 0.31 -5.24 16 19 C -0.19 -7.42 7.14 22.56 0.16 -7.25 16 20 C -0.16 -6.37 9.88 22.35 0.22 -6.15 16 21 C 0.10 4.59 5.44 38.97 0.21 4.80 16 22 N -0.88 -36.92 5.81 -50.31 -0.29 -37.21 16 23 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 24 H 0.09 4.25 8.06 -2.91 -0.02 4.22 16 25 H 0.39 12.47 7.34 -92.71 -0.68 11.79 16 26 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.08 1.75 6.92 -2.38 -0.02 1.74 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.94 7.87 -2.39 -0.02 1.92 16 31 H 0.10 3.26 4.70 -2.38 -0.01 3.25 16 32 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.13 4.26 6.32 -2.91 -0.02 4.24 16 36 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 37 H 0.39 17.99 5.78 -92.71 -0.54 17.45 16 38 H 0.39 13.58 8.77 -92.71 -0.81 12.77 16 Total: -1.00 -61.49 301.66 1.78 -59.70 By element: Atomic # 1 Polarization: 57.07 SS G_CDS: -1.04 Total: 56.03 kcal Atomic # 6 Polarization: -53.69 SS G_CDS: 2.59 Total: -51.10 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -1.48 Total: -110.26 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.71 Total: 45.63 kcal Total: -61.49 1.78 -59.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697401626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.163 kcal (2) G-P(sol) polarization free energy of solvation -61.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds