Wall clock time and date at job start Mon Mar 30 2020 07:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48498 * 109.46885 * 239.99759 * 3 2 1 5 5 H 1.48499 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47354 * 119.99690 * 3 2 1 7 7 C 1.39884 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99616 * 192.37797 * 7 2 1 9 9 C 1.41024 * 120.00116 * 12.36827 * 7 2 1 10 10 C 1.40668 * 120.26390 * 28.84175 * 9 7 2 11 11 C 1.38010 * 119.76601 * 180.29205 * 10 9 7 12 12 N 1.39854 * 119.83820 * 179.74746 * 11 10 9 13 13 C 1.47169 * 111.00036 * 56.63902 * 12 11 10 14 14 C 1.51103 * 108.02223 * 199.73674 * 13 12 11 15 15 C 1.52372 * 110.96669 * 304.60542 * 14 13 12 16 16 H 1.09004 * 114.97489 * 165.76508 * 15 14 13 17 17 C 1.52363 * 119.51482 * 311.84933 * 15 14 13 18 18 C 1.52578 * 118.05705 * 21.99429 * 15 14 13 19 19 H 1.09006 * 117.41705 * 142.89839 * 18 15 14 20 20 C 1.46737 * 111.00167 * 179.72161 * 12 11 10 21 21 C 1.39596 * 120.32235 * 359.46878 * 11 10 9 22 22 C 1.38061 * 120.54955 * 0.23770 * 21 11 10 23 23 C 1.38735 * 120.21736 * 0.03985 * 22 21 11 24 24 N 1.38869 * 120.15854 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99874 * 354.98282 * 1 2 3 26 26 H 1.07998 * 120.11712 * 0.03376 * 10 9 7 27 27 H 1.09006 * 109.61053 * 319.32904 * 13 12 11 28 28 H 1.08996 * 109.61511 * 79.67502 * 13 12 11 29 29 H 1.08995 * 107.70787 * 184.90057 * 14 13 12 30 30 H 1.09002 * 110.05268 * 65.82514 * 14 13 12 31 31 H 1.09000 * 117.52253 * 214.93941 * 17 15 14 32 32 H 1.09000 * 117.51867 * 0.05130 * 17 15 14 33 33 H 1.09004 * 109.36264 * 60.33434 * 20 12 11 34 34 H 1.09003 * 109.25626 * 300.66542 * 20 12 11 35 35 H 1.08007 * 119.72807 * 180.25608 * 21 11 10 36 36 H 1.07997 * 119.88933 * 180.02562 * 22 21 11 37 37 H 0.97001 * 120.00344 * 354.87668 * 24 23 22 38 38 H 0.97006 * 119.99752 * 174.87318 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0084 -1.2114 0.0005 8 1 3.0696 -1.2221 0.2011 9 6 1.3279 -2.4187 -0.2605 10 6 0.1835 -2.4249 -1.0785 11 6 -0.4781 -3.6113 -1.3223 12 7 -1.6190 -3.6183 -2.1310 13 6 -1.3289 -3.0504 -3.4573 14 6 -2.6393 -2.6362 -4.0854 15 6 -3.6144 -3.8061 -4.1341 16 1 -4.6489 -3.5345 -4.3445 17 6 -3.1433 -5.1543 -4.6650 18 6 -3.3974 -4.9622 -3.1623 19 1 -4.2836 -5.4357 -2.7396 20 6 -2.1603 -4.9756 -2.2650 21 6 -0.0105 -4.8052 -0.7703 22 6 1.1148 -4.8153 0.0294 23 6 1.7940 -3.6349 0.2940 24 7 2.9255 -3.6464 1.0990 25 1 -0.4850 0.8368 0.0735 26 1 -0.1785 -1.5038 -1.5108 27 1 -0.6804 -2.1809 -3.3492 28 1 -0.8357 -3.7999 -4.0763 29 1 -2.4286 -2.2984 -5.1000 30 1 -3.0836 -1.8183 -3.5182 31 1 -3.8612 -5.7540 -5.2245 32 1 -2.1073 -5.2316 -4.9948 33 1 -2.4324 -5.3551 -1.2801 34 1 -1.4018 -5.6232 -2.7049 35 1 -0.5334 -5.7288 -0.9707 36 1 1.4674 -5.7452 0.4506 37 1 3.2002 -4.4666 1.5380 38 1 3.4413 -2.8341 1.2223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699227514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:28 Heat of formation + Delta-G solvation = 54.696695 kcal Electronic energy + Delta-G solvation = -19288.394779 eV Core-core repulsion = 16516.860597 eV Total energy + Delta-G solvation = -2771.534182 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76688 -37.63839 -35.11780 -33.48217 -32.00356 -30.90328 -29.39346 -27.35394 -25.02362 -24.74947 -23.19513 -21.58524 -20.37898 -19.69863 -18.12987 -17.15967 -16.24600 -15.77075 -15.42987 -14.82677 -14.60333 -14.40696 -13.70428 -13.57920 -12.91453 -12.57031 -12.49362 -12.24876 -11.86580 -11.75239 -11.29051 -11.12425 -11.07763 -11.02598 -10.87259 -10.46191 -10.31824 -10.08215 -9.71919 -9.55491 -9.46088 -9.15705 -9.05974 -7.87335 -7.24033 -6.55798 -5.89775 -4.10488 2.87946 3.12900 3.14951 3.20428 3.26889 3.91846 4.03022 4.61481 4.77763 4.94540 5.02097 5.20531 5.31742 5.37411 5.51741 5.70246 5.80612 5.86246 5.89968 6.06154 6.12553 6.26845 6.28324 6.35693 6.41045 6.51075 6.52664 6.59124 7.04145 7.09074 7.27931 7.35817 7.61054 7.75009 7.79658 8.05997 8.30609 8.39071 8.69236 8.89265 8.93044 9.16679 9.23664 10.40337 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.006749 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.271714 B = 4148.023945 C = 5222.834163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.466 4.466 8 H 0.070 0.930 9 C 0.076 3.924 10 C -0.142 4.142 11 C 0.066 3.934 12 N -0.474 5.474 13 C 0.054 3.946 14 C -0.083 4.083 15 C -0.129 4.129 16 H 0.096 0.904 17 C -0.188 4.188 18 C -0.146 4.146 19 H 0.102 0.898 20 C 0.086 3.914 21 C -0.230 4.230 22 C -0.169 4.169 23 C 0.108 3.892 24 N -0.886 5.886 25 H 0.277 0.723 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.375 0.625 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 -4.951 -5.767 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.497 4.497 8 H 0.088 0.912 9 C 0.071 3.929 10 C -0.165 4.165 11 C -0.030 4.030 12 N -0.191 5.191 13 C -0.073 4.073 14 C -0.121 4.121 15 C -0.148 4.148 16 H 0.115 0.885 17 C -0.225 4.225 18 C -0.165 4.165 19 H 0.120 0.880 20 C -0.042 4.042 21 C -0.253 4.253 22 C -0.193 4.193 23 C 0.007 3.993 24 N -0.428 5.428 25 H 0.088 0.912 26 H 0.142 0.858 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.201 0.799 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.925 -4.457 -5.684 8.221 hybrid contribution 1.064 0.190 0.098 1.085 sum -2.861 -4.266 -5.587 7.590 Atomic orbital electron populations 1.69824 1.07066 1.28738 1.37151 1.25752 0.94766 1.00587 0.93042 0.86439 0.79981 0.81031 0.79548 1.19188 1.20540 1.19439 1.19058 0.95709 0.90541 1.44424 0.91209 1.17091 0.93391 0.90426 0.92020 1.20699 0.98537 0.95188 1.02065 1.18560 0.90777 0.94233 0.99451 1.59712 1.28561 1.19385 1.11395 1.21995 0.96391 0.99864 0.89032 1.20617 0.94760 0.96812 0.99915 1.21869 0.99875 0.90021 1.02993 0.88536 1.23154 1.02088 1.00338 0.96928 1.22406 0.99884 1.03410 0.90755 0.87968 1.21629 0.93542 0.90203 0.98799 1.20263 1.00579 0.95281 1.09153 1.19809 0.99188 0.94784 1.05549 1.18001 0.90830 0.94125 0.96345 1.41879 1.30820 1.13056 1.57020 0.91215 0.85767 0.89671 0.94973 0.92129 0.90491 0.89282 0.89057 0.90359 0.94302 0.89036 0.89634 0.79933 0.78161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.13 10.93 55.54 0.61 -20.52 16 2 C 0.07 1.88 5.22 -17.33 -0.09 1.79 16 3 Si 0.90 18.94 29.58 -169.99 -5.03 13.91 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.14 8.47 -37.91 -0.32 -12.46 16 8 H 0.07 1.72 6.71 -52.49 -0.35 1.37 16 9 C 0.08 2.01 5.55 -106.66 -0.59 1.41 16 10 C -0.14 -3.70 7.57 -38.75 -0.29 -3.99 16 11 C 0.07 1.56 5.63 -83.78 -0.47 1.09 16 12 N -0.47 -9.69 4.65 -172.25 -0.80 -10.49 16 13 C 0.05 0.98 5.19 -4.63 -0.02 0.95 16 14 C -0.08 -1.27 6.05 -28.01 -0.17 -1.44 16 15 C -0.13 -1.78 6.19 -91.48 -0.57 -2.35 16 16 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 17 C -0.19 -2.39 9.65 -26.74 -0.26 -2.65 16 18 C -0.15 -2.12 6.33 -90.61 -0.57 -2.69 16 19 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 20 C 0.09 1.50 4.04 -4.00 -0.02 1.48 16 21 C -0.23 -5.23 8.80 -39.14 -0.34 -5.58 16 22 C -0.17 -3.85 9.87 -39.46 -0.39 -4.24 16 23 C 0.11 2.60 6.79 -83.23 -0.56 2.04 16 24 N -0.89 -17.89 8.97 32.75 0.29 -17.60 16 25 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 26 H 0.12 3.39 5.49 -52.49 -0.29 3.10 16 27 H 0.08 1.70 6.44 -51.93 -0.33 1.36 16 28 H 0.03 0.57 7.01 -51.93 -0.36 0.20 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.22 7.24 -51.93 -0.38 0.84 16 33 H 0.08 1.39 7.38 -51.93 -0.38 1.00 16 34 H 0.04 0.68 7.23 -51.93 -0.38 0.31 16 35 H 0.09 1.87 5.77 -52.48 -0.30 1.57 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.38 6.40 8.84 -40.82 -0.36 6.04 16 38 H 0.39 7.70 7.08 -40.82 -0.29 7.41 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -27.98 297.05 -10.22 -38.20 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -5.10 Total: 18.66 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -4.67 Total: -26.64 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.10 Total: -48.61 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.98 -10.22 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699227514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.901 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds