Wall clock time and date at job start Mon Mar 30 2020 07:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48498 * 109.46885 * 239.99759 * 3 2 1 5 5 H 1.48499 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47354 * 119.99690 * 3 2 1 7 7 C 1.39884 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99616 * 192.37797 * 7 2 1 9 9 C 1.41024 * 120.00116 * 12.36827 * 7 2 1 10 10 C 1.40668 * 120.26390 * 28.84175 * 9 7 2 11 11 C 1.38010 * 119.76601 * 180.29205 * 10 9 7 12 12 N 1.39854 * 119.83820 * 179.74746 * 11 10 9 13 13 C 1.47169 * 111.00036 * 56.63902 * 12 11 10 14 14 C 1.51103 * 108.02223 * 199.73674 * 13 12 11 15 15 C 1.52372 * 110.96669 * 304.60542 * 14 13 12 16 16 H 1.09004 * 114.97489 * 165.76508 * 15 14 13 17 17 C 1.52363 * 119.51482 * 311.84933 * 15 14 13 18 18 C 1.52578 * 118.05705 * 21.99429 * 15 14 13 19 19 H 1.09006 * 117.41705 * 142.89839 * 18 15 14 20 20 C 1.46737 * 111.00167 * 179.72161 * 12 11 10 21 21 C 1.39596 * 120.32235 * 359.46878 * 11 10 9 22 22 C 1.38061 * 120.54955 * 0.23770 * 21 11 10 23 23 C 1.38735 * 120.21736 * 0.03985 * 22 21 11 24 24 N 1.38869 * 120.15854 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99874 * 354.98282 * 1 2 3 26 26 H 1.07998 * 120.11712 * 0.03376 * 10 9 7 27 27 H 1.09006 * 109.61053 * 319.32904 * 13 12 11 28 28 H 1.08996 * 109.61511 * 79.67502 * 13 12 11 29 29 H 1.08995 * 107.70787 * 184.90057 * 14 13 12 30 30 H 1.09002 * 110.05268 * 65.82514 * 14 13 12 31 31 H 1.09000 * 117.52253 * 214.93941 * 17 15 14 32 32 H 1.09000 * 117.51867 * 0.05130 * 17 15 14 33 33 H 1.09004 * 109.36264 * 60.33434 * 20 12 11 34 34 H 1.09003 * 109.25626 * 300.66542 * 20 12 11 35 35 H 1.08007 * 119.72807 * 180.25608 * 21 11 10 36 36 H 1.07997 * 119.88933 * 180.02562 * 22 21 11 37 37 H 0.97001 * 120.00344 * 354.87668 * 24 23 22 38 38 H 0.97006 * 119.99752 * 174.87318 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0084 -1.2114 0.0005 8 1 3.0696 -1.2221 0.2011 9 6 1.3279 -2.4187 -0.2605 10 6 0.1835 -2.4249 -1.0785 11 6 -0.4781 -3.6113 -1.3223 12 7 -1.6190 -3.6183 -2.1310 13 6 -1.3289 -3.0504 -3.4573 14 6 -2.6393 -2.6362 -4.0854 15 6 -3.6144 -3.8061 -4.1341 16 1 -4.6489 -3.5345 -4.3445 17 6 -3.1433 -5.1543 -4.6650 18 6 -3.3974 -4.9622 -3.1623 19 1 -4.2836 -5.4357 -2.7396 20 6 -2.1603 -4.9756 -2.2650 21 6 -0.0105 -4.8052 -0.7703 22 6 1.1148 -4.8153 0.0294 23 6 1.7940 -3.6349 0.2940 24 7 2.9255 -3.6464 1.0990 25 1 -0.4850 0.8368 0.0735 26 1 -0.1785 -1.5038 -1.5108 27 1 -0.6804 -2.1809 -3.3492 28 1 -0.8357 -3.7999 -4.0763 29 1 -2.4286 -2.2984 -5.1000 30 1 -3.0836 -1.8183 -3.5182 31 1 -3.8612 -5.7540 -5.2245 32 1 -2.1073 -5.2316 -4.9948 33 1 -2.4324 -5.3551 -1.2801 34 1 -1.4018 -5.6232 -2.7049 35 1 -0.5334 -5.7288 -0.9707 36 1 1.4674 -5.7452 0.4506 37 1 3.2002 -4.4666 1.5380 38 1 3.4413 -2.8341 1.2223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699227514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:27 Heat of formation + Delta-G solvation = 38.423808 kcal Electronic energy + Delta-G solvation = -19289.100425 eV Core-core repulsion = 16516.860597 eV Total energy + Delta-G solvation = -2772.239828 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19188 -39.29420 -36.63718 -35.35460 -33.59220 -32.36026 -31.21910 -29.02419 -26.83089 -26.19937 -24.65782 -23.12282 -21.80270 -21.41583 -19.54753 -18.84155 -17.88650 -17.40759 -17.04057 -16.49058 -16.13816 -15.91686 -15.09557 -14.93823 -14.57850 -14.28192 -14.04003 -13.74864 -13.60654 -13.36410 -12.95059 -12.75397 -12.66763 -12.34136 -12.26916 -12.13149 -11.88046 -11.68112 -11.25010 -11.18142 -10.96584 -10.73986 -10.53141 -9.50088 -9.14544 -8.44708 -7.67109 -6.05244 1.07507 1.33649 1.40858 1.51042 1.55247 2.26805 2.77956 2.87089 3.23885 3.66964 3.77617 3.82416 3.87907 4.07761 4.15426 4.31901 4.37350 4.52794 4.57424 4.69620 4.75380 4.87610 4.91374 4.98033 5.15480 5.20840 5.21325 5.28260 5.29868 5.34725 5.40312 5.61742 5.80831 5.96328 6.01738 6.19415 6.48609 6.56224 6.91077 7.00185 7.07064 7.35702 7.57869 8.53262 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.006749 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.271714 B = 4148.023945 C = 5222.834163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.030 3.970 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.075 0.925 9 C 0.040 3.960 10 C -0.164 4.164 11 C 0.059 3.941 12 N -0.488 5.488 13 C 0.057 3.943 14 C -0.080 4.080 15 C -0.133 4.133 16 H 0.119 0.881 17 C -0.166 4.166 18 C -0.160 4.160 19 H 0.121 0.879 20 C 0.086 3.914 21 C -0.231 4.231 22 C -0.176 4.176 23 C 0.098 3.902 24 N -0.875 5.875 25 H 0.279 0.721 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.393 0.607 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -5.986 -6.514 9.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.523 4.523 8 H 0.093 0.907 9 C 0.034 3.966 10 C -0.187 4.187 11 C -0.038 4.038 12 N -0.205 5.205 13 C -0.069 4.069 14 C -0.118 4.118 15 C -0.152 4.152 16 H 0.137 0.863 17 C -0.203 4.203 18 C -0.179 4.179 19 H 0.139 0.861 20 C -0.041 4.041 21 C -0.253 4.253 22 C -0.200 4.200 23 C -0.005 4.005 24 N -0.418 5.418 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.221 0.779 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.343 -5.522 -6.423 9.519 hybrid contribution 1.177 0.399 0.322 1.284 sum -3.166 -5.122 -6.101 8.572 Atomic orbital electron populations 1.69939 1.08653 1.29600 1.38374 1.26590 0.95467 1.03899 0.92229 0.85333 0.78559 0.76482 0.79722 1.18886 1.20100 1.18467 1.19331 0.96091 0.91330 1.45572 0.90661 1.17479 0.94242 0.91786 0.93054 1.20614 0.99604 0.95271 1.03168 1.18755 0.91386 0.93814 0.99855 1.59682 1.27244 1.21477 1.12102 1.21954 0.97853 0.98730 0.88344 1.20571 0.93410 0.97325 1.00473 1.21938 1.00528 0.89609 1.03089 0.86305 1.23199 1.02418 0.99347 0.95365 1.22413 0.99194 1.04815 0.91445 0.86060 1.21669 0.94770 0.88306 0.99388 1.20610 1.00525 0.95825 1.08348 1.20164 0.99014 0.95523 1.05308 1.18169 0.91824 0.93850 0.96641 1.41759 1.29641 1.14063 1.56294 0.91079 0.88183 0.92564 0.94442 0.89955 0.91853 0.86421 0.89814 0.90981 0.94451 0.86681 0.86788 0.77947 0.77945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.02 10.93 21.82 0.24 -45.78 16 2 C 0.03 1.57 5.22 85.23 0.44 2.02 16 3 Si 0.98 39.57 29.58 68.60 2.03 41.60 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.49 -26.36 8.47 23.35 0.20 -26.16 16 8 H 0.08 3.78 6.71 -2.91 -0.02 3.76 16 9 C 0.04 2.16 5.55 -21.18 -0.12 2.04 16 10 C -0.16 -8.91 7.57 22.81 0.17 -8.73 16 11 C 0.06 2.85 5.63 38.13 0.21 3.06 16 12 N -0.49 -20.21 4.65 -698.89 -3.25 -23.45 16 13 C 0.06 2.13 5.19 85.63 0.44 2.57 16 14 C -0.08 -2.38 6.05 29.77 0.18 -2.20 16 15 C -0.13 -3.34 6.19 -11.35 -0.07 -3.41 16 16 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 17 C -0.17 -3.68 9.65 30.59 0.30 -3.38 16 18 C -0.16 -4.25 6.33 -10.79 -0.07 -4.32 16 19 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 20 C 0.09 2.90 4.04 86.28 0.35 3.25 16 21 C -0.23 -10.38 8.80 22.56 0.20 -10.18 16 22 C -0.18 -7.86 9.87 22.35 0.22 -7.64 16 23 C 0.10 4.72 6.79 38.96 0.26 4.98 16 24 N -0.87 -34.73 8.97 -50.31 -0.45 -35.19 16 25 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 26 H 0.10 5.84 5.49 -2.91 -0.02 5.82 16 27 H 0.06 2.38 6.44 -2.38 -0.02 2.37 16 28 H 0.04 1.33 7.01 -2.39 -0.02 1.31 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 2.01 7.24 -2.39 -0.02 1.99 16 33 H 0.07 2.48 7.38 -2.38 -0.02 2.46 16 34 H 0.04 1.26 7.23 -2.39 -0.02 1.24 16 35 H 0.12 4.54 5.77 -2.91 -0.02 4.52 16 36 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.39 12.76 8.84 -92.71 -0.82 11.94 16 38 H 0.39 15.36 7.08 -92.70 -0.66 14.70 16 Total: -1.00 -62.00 297.05 0.91 -61.09 By element: Atomic # 1 Polarization: 50.23 SS G_CDS: -0.38 Total: 49.85 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 2.73 Total: -48.10 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -3.46 Total: -104.43 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -62.00 0.91 -61.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699227514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.512 kcal (2) G-P(sol) polarization free energy of solvation -62.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds