Wall clock time and date at job start Mon Mar 30 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.29864 * 2 1 4 4 C 1.51549 * 110.33227 * 237.85013 * 2 1 3 5 5 C 1.38447 * 130.37531 * 77.45053 * 4 2 1 6 6 C 1.38115 * 120.21471 * 180.02562 * 5 4 2 7 7 C 1.38259 * 119.93353 * 0.02562 * 6 5 4 8 8 C 1.38113 * 119.94514 * 359.97438 * 7 6 5 9 9 C 1.38294 * 109.77397 * 257.48851 * 4 2 1 10 10 C 1.51544 * 109.77912 * 359.94207 * 9 4 2 11 11 C 1.53482 * 110.33557 * 122.26208 * 2 1 3 12 12 C 1.53515 * 110.78849 * 212.33767 * 11 2 1 13 13 C 1.55502 * 101.96265 * 102.18531 * 12 11 2 14 14 C 1.55036 * 101.04455 * 33.39177 * 13 12 11 15 15 H 1.08999 * 110.30685 * 82.94746 * 14 13 12 16 16 C 1.50700 * 110.30717 * 205.11408 * 14 13 12 17 17 H 1.08003 * 119.99552 * 357.17803 * 16 14 13 18 18 C 1.37871 * 119.99994 * 177.18724 * 16 14 13 19 19 N 1.31516 * 120.00339 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99813 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47460 * 60.00364 * 20 18 16 22 22 H 1.48504 * 109.46901 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47338 * 299.99982 * 20 18 16 24 24 O 1.42247 * 111.61654 * 333.54973 * 11 2 1 25 25 H 1.08997 * 109.47477 * 180.69745 * 1 2 3 26 26 H 1.09000 * 109.47123 * 300.69709 * 1 2 3 27 27 H 1.09000 * 109.47195 * 60.69392 * 1 2 3 28 28 H 1.07999 * 119.89722 * 0.05229 * 5 4 2 29 29 H 1.07994 * 120.03313 * 179.73645 * 6 5 4 30 30 H 1.08009 * 120.02419 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.89785 * 180.02562 * 8 7 6 32 32 H 1.09005 * 110.33013 * 224.84012 * 10 9 4 33 33 H 1.08996 * 110.33426 * 102.60690 * 10 9 4 34 34 H 1.09003 * 110.93250 * 220.35901 * 12 11 2 35 35 H 1.09002 * 110.93568 * 344.02026 * 12 11 2 36 36 H 1.08997 * 111.11150 * 275.44710 * 13 12 11 37 37 H 1.09001 * 111.14643 * 151.34181 * 13 12 11 38 38 H 0.97001 * 120.00330 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0565 -0.7562 -1.2032 5 6 2.1533 -0.3744 -2.5304 6 6 2.6748 -1.2446 -3.4677 7 6 3.1014 -2.5013 -3.0802 8 6 3.0058 -2.8841 -1.7567 9 6 2.4835 -2.0132 -0.8156 10 6 2.2748 -2.1886 0.6751 11 6 2.0633 -0.7682 1.2170 12 6 3.3897 -0.1668 1.7024 13 6 2.9364 0.6547 2.9425 14 6 1.7737 -0.2238 3.4718 15 1 2.1624 -1.0348 4.0876 16 6 0.8024 0.6149 4.2619 17 1 1.0025 1.6637 4.4245 18 6 -0.3416 0.0433 4.7771 19 7 -0.5854 -1.2338 4.5788 20 14 -1.5452 1.0827 5.7570 21 1 -2.0497 2.1903 4.9062 22 1 -2.6844 0.2379 6.1974 23 1 -0.8583 1.6460 6.9470 24 8 1.1352 -0.7520 2.2948 25 1 -0.3634 -1.0275 0.0125 26 1 -0.3633 0.5246 0.8837 27 1 -0.3633 0.5030 -0.8961 28 1 1.8203 0.6071 -2.8339 29 1 2.7450 -0.9453 -4.5030 30 1 3.5091 -3.1831 -3.8121 31 1 3.3397 -3.8659 -1.4548 32 1 3.1563 -2.6402 1.1304 33 1 1.3936 -2.8014 0.8647 34 1 4.0908 -0.9506 1.9894 35 1 3.8240 0.4829 0.9426 36 1 2.5804 1.6425 2.6503 37 1 3.7372 0.7304 3.6781 38 1 -1.3900 -1.6360 4.9417 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699361925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:37 Heat of formation + Delta-G solvation = -28.570547 kcal Electronic energy + Delta-G solvation = -19633.879049 eV Core-core repulsion = 16826.441377 eV Total energy + Delta-G solvation = -2807.437672 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38675 -37.99119 -34.63170 -32.36360 -31.65307 -30.95879 -29.17486 -28.55448 -26.21812 -24.32910 -22.93509 -21.24336 -20.58279 -20.31708 -18.98204 -16.53080 -16.00451 -15.45945 -15.31624 -14.62705 -14.41043 -13.95851 -13.65501 -13.32469 -12.94198 -12.66855 -12.39089 -12.32186 -11.93261 -11.74925 -11.56934 -11.38122 -10.96740 -10.88336 -10.65287 -10.62013 -10.45068 -10.19959 -10.16352 -9.98113 -9.60478 -9.09720 -8.60319 -8.55571 -8.22414 -7.89385 -5.99935 -4.12978 1.59103 1.59462 3.32377 3.37381 3.39453 3.98176 4.42686 4.72954 4.85812 5.02187 5.13861 5.20803 5.34107 5.39529 5.47654 5.61982 5.72662 5.82498 5.88759 6.05524 6.11042 6.13227 6.21931 6.23853 6.34824 6.38007 6.49120 6.57359 6.64188 6.65359 6.67197 6.81191 6.84176 6.86809 7.02456 7.08043 7.23703 7.59430 7.89355 8.26507 8.64225 9.03993 9.57886 11.07245 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.035943 B = 0.005670 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.813619 B = 4936.699495 C = 5067.608681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.054 4.054 3 H 0.075 0.925 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.113 4.113 9 C -0.084 4.084 10 C -0.089 4.089 11 C 0.110 3.890 12 C -0.142 4.142 13 C -0.147 4.147 14 C 0.209 3.791 15 H 0.028 0.972 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.080 3.920 19 N -0.862 5.862 20 Si 0.889 3.111 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 O -0.331 6.331 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.610 -0.644 -12.109 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 H 0.093 0.907 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.131 4.131 9 C -0.084 4.084 10 C -0.126 4.126 11 C 0.068 3.932 12 C -0.180 4.180 13 C -0.185 4.185 14 C 0.154 3.846 15 H 0.046 0.954 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.126 4.126 19 N -0.498 5.498 20 Si 0.716 3.284 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.250 6.250 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.265 -0.873 -12.068 13.625 hybrid contribution -0.427 0.499 0.355 0.747 sum 5.838 -0.373 -11.712 13.092 Atomic orbital electron populations 1.21456 0.92992 1.02205 1.01210 1.20851 0.97179 0.98302 0.90919 0.90721 1.20755 0.97442 0.95716 0.94210 1.20597 1.00402 0.99691 0.92060 1.20937 1.00495 0.94352 0.98904 1.20938 1.01384 0.96595 0.95647 1.20605 1.00615 0.99228 0.92641 1.20725 0.97239 0.94334 0.96099 1.21413 1.02294 0.99243 0.89692 1.21670 0.89829 0.91895 0.89758 1.23032 0.96742 0.99593 0.98587 1.23378 0.99541 0.99809 0.95732 1.20615 0.89139 0.90996 0.83820 0.95430 1.21045 1.07202 0.96003 1.32939 0.92027 1.25042 0.97703 0.94757 0.95111 1.70023 1.25891 1.10774 1.43095 0.86730 0.80765 0.80434 0.80441 1.20098 1.21216 1.20163 1.88788 1.33908 1.84258 1.18012 0.92856 0.90399 0.94317 0.86633 0.86433 0.86429 0.86586 0.91053 0.89273 0.91598 0.91767 0.91625 0.92051 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.58 37.16 0.32 -1.97 16 2 C -0.05 -0.98 2.88 -91.11 -0.26 -1.24 16 3 H 0.07 1.31 7.70 -51.93 -0.40 0.91 16 4 C -0.08 -1.33 5.46 -104.11 -0.57 -1.90 16 5 C -0.11 -1.55 10.04 -39.55 -0.40 -1.95 16 6 C -0.13 -1.61 10.05 -39.62 -0.40 -2.01 16 7 C -0.13 -1.59 10.05 -39.62 -0.40 -1.99 16 8 C -0.11 -1.59 10.04 -39.55 -0.40 -1.98 16 9 C -0.08 -1.37 6.15 -104.10 -0.64 -2.01 16 10 C -0.09 -1.61 6.09 -27.21 -0.17 -1.78 16 11 C 0.11 2.19 0.99 -89.85 -0.09 2.10 16 12 C -0.14 -2.58 6.07 -25.13 -0.15 -2.73 16 13 C -0.15 -3.01 6.54 -24.33 -0.16 -3.17 16 14 C 0.21 5.28 3.28 -26.81 -0.09 5.20 16 15 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 16 C -0.53 -14.71 8.80 -34.44 -0.30 -15.01 16 17 H 0.06 1.65 7.76 -52.48 -0.41 1.24 16 18 C 0.08 2.23 5.42 -17.82 -0.10 2.13 16 19 N -0.86 -25.22 12.93 55.43 0.72 -24.50 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 O -0.33 -8.21 8.60 -35.23 -0.30 -8.52 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.66 7.64 -51.93 -0.40 1.27 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.07 1.20 7.48 -51.93 -0.39 0.81 16 33 H 0.09 1.73 8.11 -51.93 -0.42 1.31 16 34 H 0.07 1.12 7.49 -51.93 -0.39 0.74 16 35 H 0.06 1.06 7.64 -51.93 -0.40 0.66 16 36 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -29.42 307.80 -9.50 -38.92 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.73 Total: 1.63 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -3.80 Total: -28.32 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.72 Total: -24.50 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.30 Total: -8.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.42 -9.50 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699361925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.351 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds