Wall clock time and date at job start Mon Mar 30 2020 07:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47371 * 2 1 4 4 N 1.46498 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.36929 * 120.00029 * 275.65369 * 4 3 2 6 6 H 1.07997 * 120.00156 * 34.01204 * 5 4 3 7 7 C 1.38810 * 120.00136 * 214.01077 * 5 4 3 8 8 N 1.31625 * 119.99982 * 22.90667 * 7 5 4 9 9 Si 1.86801 * 120.00196 * 202.90940 * 7 5 4 10 10 H 1.48501 * 109.47113 * 59.99802 * 9 7 5 11 11 H 1.48506 * 109.47270 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47284 * 299.99782 * 9 7 5 13 13 C 1.46502 * 119.99552 * 95.65785 * 4 3 2 14 14 C 1.50702 * 109.47090 * 269.99518 * 13 4 3 15 15 C 1.38386 * 119.92198 * 90.00051 * 14 13 4 16 16 C 1.38339 * 120.30354 * 180.25207 * 15 14 13 17 17 C 1.37972 * 120.15081 * 359.49826 * 16 15 14 18 18 C 1.50702 * 120.07876 * 180.25375 * 17 16 15 19 19 C 1.39608 * 119.84661 * 0.52256 * 17 16 15 20 20 C 1.43196 * 120.15189 * 179.70462 * 19 17 16 21 21 N 7.29550 * 152.57475 * 204.99645 * 2 1 3 22 22 C 1.37924 * 119.92428 * 270.02830 * 14 13 4 23 23 H 1.08991 * 109.47491 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46873 * 300.00484 * 1 2 3 25 25 H 1.09004 * 109.47121 * 59.99931 * 1 2 3 26 26 H 1.09002 * 109.46873 * 239.99516 * 2 1 3 27 27 H 1.08997 * 109.46502 * 120.00096 * 2 1 3 28 28 H 1.08998 * 109.47147 * 59.99578 * 3 2 1 29 29 H 1.09004 * 109.47054 * 300.00110 * 3 2 1 30 30 H 0.96998 * 120.00193 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.46937 * 149.99899 * 13 4 3 32 32 H 1.08999 * 109.47295 * 29.99898 * 13 4 3 33 33 H 1.07998 * 119.84669 * 359.97438 * 15 14 13 34 34 H 1.08000 * 119.92489 * 179.72065 * 16 15 14 35 35 H 1.09004 * 109.46875 * 270.27706 * 18 17 16 36 36 H 1.09000 * 109.46814 * 30.26820 * 18 17 16 37 37 H 1.08995 * 109.47149 * 150.27246 * 18 17 16 38 38 H 1.07998 * 120.07900 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.3257 1.1810 6 1 3.7875 0.7210 1.9805 7 6 5.3992 1.9846 1.3500 8 7 5.6806 3.0420 0.6183 9 14 6.6283 1.3708 2.6157 10 1 7.0216 -0.0232 2.2883 11 1 7.8311 2.2416 2.6007 12 1 6.0090 1.4064 3.9650 13 6 4.2380 1.5672 -1.2617 14 6 4.4894 0.1961 -1.8343 15 6 3.5661 -0.3730 -2.6938 16 6 3.7864 -1.6333 -3.2200 17 6 4.9347 -2.3274 -2.8987 18 6 5.1758 -3.6978 -3.4773 19 6 5.8702 -1.7595 -2.0318 20 6 7.0613 -2.4767 -1.6890 21 7 8.0056 -3.0455 -1.4199 22 6 5.6389 -0.4889 -1.5002 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 6.5262 3.5023 0.7361 31 1 5.1905 2.0657 -1.0811 32 1 3.6492 2.1533 -1.9673 33 1 2.6673 0.1675 -2.9514 34 1 3.0596 -2.0734 -3.8866 35 1 4.7487 -4.4517 -2.8159 36 1 4.7048 -3.7661 -4.4579 37 1 6.2479 -3.8669 -3.5765 38 1 6.3587 -0.0437 -0.8293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701858452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:13 Heat of formation + Delta-G solvation = 56.069151 kcal Electronic energy + Delta-G solvation = -19112.156680 eV Core-core repulsion = 16340.682012 eV Total energy + Delta-G solvation = -2771.474668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.33603 -36.58280 -35.81109 -33.27401 -32.56437 -30.88018 -30.58818 -27.94978 -25.62450 -24.72587 -23.32818 -21.97880 -20.87846 -20.17005 -17.75602 -16.55058 -15.53630 -15.32783 -14.81551 -14.39620 -14.08390 -13.94474 -13.79906 -13.20643 -12.97166 -12.91276 -12.76192 -12.49919 -12.39604 -12.22910 -11.70455 -11.50162 -11.40131 -11.10847 -10.99020 -10.93547 -10.68520 -10.46087 -10.37837 -10.06259 -10.00518 -9.76180 -8.57115 -8.49977 -8.05483 -6.71273 -5.88933 -3.41676 1.20180 1.79351 2.98041 3.30975 3.34664 3.39807 3.43817 4.22987 4.28198 4.43736 5.02492 5.07932 5.21173 5.43896 5.46535 5.59130 5.63733 5.64766 5.74359 5.85622 5.92742 5.96919 6.06803 6.16182 6.22845 6.41404 6.42218 6.56133 6.56852 6.60191 6.74449 6.83665 6.92967 7.11743 7.18852 7.32400 7.58700 7.75077 7.79676 8.40686 9.08482 9.71879 10.27263 11.10866 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.009350 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.004235 B = 2993.915764 C = 4431.331204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.148 3.852 4 N -0.575 5.575 5 C -0.253 4.253 6 H 0.062 0.938 7 C 0.012 3.988 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.167 3.833 14 C -0.075 4.075 15 C -0.086 4.086 16 C -0.129 4.129 17 C -0.061 4.061 18 C -0.115 4.115 19 C -0.046 4.046 20 C 0.270 3.730 21 N -0.442 5.442 22 C -0.045 4.045 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.257 0.743 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -6.426 -8.179 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.022 3.978 4 N -0.293 5.293 5 C -0.383 4.383 6 H 0.080 0.920 7 C -0.188 4.188 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.206 1.206 13 C 0.041 3.959 14 C -0.078 4.078 15 C -0.105 4.105 16 C -0.147 4.147 17 C -0.064 4.064 18 C -0.172 4.172 19 C -0.049 4.049 20 C -0.044 4.044 21 N -0.118 5.118 22 C -0.066 4.066 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.885 -7.124 -7.712 11.580 hybrid contribution 0.307 -0.239 0.686 0.789 sum -4.578 -7.363 -7.026 11.160 Atomic orbital electron populations 1.21726 0.97436 1.00338 1.00976 1.22190 0.93660 1.00991 1.01854 1.20930 0.84879 0.93054 0.98952 1.43750 0.99418 1.84145 1.01982 1.18994 1.03079 1.23196 0.93010 0.92034 1.25026 1.00554 0.94970 0.98279 1.69950 1.23827 1.16574 1.42225 0.86605 0.81167 0.78739 0.81863 1.20748 1.21439 1.20553 1.20179 1.01303 0.88463 0.85959 1.21247 0.92002 1.00981 0.93591 1.21276 0.98571 0.94668 0.95998 1.20795 0.96713 0.95304 1.01858 1.19647 0.93983 0.96141 0.96649 1.20802 1.02048 0.93525 1.00803 1.15988 0.90525 0.95034 1.03372 1.25788 0.92893 0.92841 0.92926 1.81109 1.11411 1.09885 1.09394 1.21164 0.97701 0.91446 0.96294 0.93880 0.93304 0.93457 0.92408 0.92573 0.93678 0.94610 0.93275 0.87205 0.94341 0.86150 0.86047 0.91112 0.91145 0.92136 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.63 16 2 C -0.15 -2.48 6.23 -26.73 -0.17 -2.64 16 3 C 0.15 2.85 5.72 -4.04 -0.02 2.83 16 4 N -0.57 -12.97 2.44 -174.61 -0.43 -13.40 16 5 C -0.25 -6.45 9.48 -15.06 -0.14 -6.59 16 6 H 0.06 1.60 7.93 -52.49 -0.42 1.18 16 7 C 0.01 0.31 4.95 -17.43 -0.09 0.22 16 8 N -0.88 -23.76 11.31 55.49 0.63 -23.13 16 9 Si 0.89 21.00 29.61 -169.99 -5.03 15.97 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.17 3.51 5.45 -5.19 -0.03 3.48 16 14 C -0.07 -1.36 5.44 -104.68 -0.57 -1.93 16 15 C -0.09 -1.29 7.86 -39.49 -0.31 -1.60 16 16 C -0.13 -1.70 9.69 -39.64 -0.38 -2.09 16 17 C -0.06 -0.87 5.91 -104.21 -0.62 -1.48 16 18 C -0.12 -1.31 9.61 36.01 0.35 -0.96 16 19 C -0.05 -0.77 5.73 -106.93 -0.61 -1.38 16 20 C 0.27 4.78 13.80 -22.51 -0.31 4.47 16 21 N -0.44 -8.38 18.53 41.79 0.77 -7.61 16 22 C -0.04 -0.84 9.41 -39.17 -0.37 -1.20 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.96 6.12 -51.93 -0.32 0.64 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 29 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.11 2.65 5.25 -51.93 -0.27 2.38 16 32 H 0.04 0.75 7.80 -51.93 -0.40 0.35 16 33 H 0.12 1.63 8.02 -52.49 -0.42 1.20 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.06 0.73 7.09 -51.93 -0.37 0.36 16 38 H 0.13 2.67 8.06 -52.49 -0.42 2.24 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -27.20 323.76 -7.63 -34.83 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.54 Total: -1.04 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.90 Total: -10.51 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.98 Total: -44.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.20 -7.63 -34.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701858452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.898 kcal (2) G-P(sol) polarization free energy of solvation -27.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds