Wall clock time and date at job start Mon Mar 30 2020 07:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47371 * 2 1 4 4 N 1.46498 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.36929 * 120.00029 * 275.65369 * 4 3 2 6 6 H 1.07997 * 120.00156 * 34.01204 * 5 4 3 7 7 C 1.38810 * 120.00136 * 214.01077 * 5 4 3 8 8 N 1.31625 * 119.99982 * 22.90667 * 7 5 4 9 9 Si 1.86801 * 120.00196 * 202.90940 * 7 5 4 10 10 H 1.48501 * 109.47113 * 59.99802 * 9 7 5 11 11 H 1.48506 * 109.47270 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47284 * 299.99782 * 9 7 5 13 13 C 1.46502 * 119.99552 * 95.65785 * 4 3 2 14 14 C 1.50702 * 109.47090 * 269.99518 * 13 4 3 15 15 C 1.38386 * 119.92198 * 90.00051 * 14 13 4 16 16 C 1.38339 * 120.30354 * 180.25207 * 15 14 13 17 17 C 1.37972 * 120.15081 * 359.49826 * 16 15 14 18 18 C 1.50702 * 120.07876 * 180.25375 * 17 16 15 19 19 C 1.39608 * 119.84661 * 0.52256 * 17 16 15 20 20 C 1.43196 * 120.15189 * 179.70462 * 19 17 16 21 21 N 7.29550 * 152.57475 * 204.99645 * 2 1 3 22 22 C 1.37924 * 119.92428 * 270.02830 * 14 13 4 23 23 H 1.08991 * 109.47491 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46873 * 300.00484 * 1 2 3 25 25 H 1.09004 * 109.47121 * 59.99931 * 1 2 3 26 26 H 1.09002 * 109.46873 * 239.99516 * 2 1 3 27 27 H 1.08997 * 109.46502 * 120.00096 * 2 1 3 28 28 H 1.08998 * 109.47147 * 59.99578 * 3 2 1 29 29 H 1.09004 * 109.47054 * 300.00110 * 3 2 1 30 30 H 0.96998 * 120.00193 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.46937 * 149.99899 * 13 4 3 32 32 H 1.08999 * 109.47295 * 29.99898 * 13 4 3 33 33 H 1.07998 * 119.84669 * 359.97438 * 15 14 13 34 34 H 1.08000 * 119.92489 * 179.72065 * 16 15 14 35 35 H 1.09004 * 109.46875 * 270.27706 * 18 17 16 36 36 H 1.09000 * 109.46814 * 30.26820 * 18 17 16 37 37 H 1.08995 * 109.47149 * 150.27246 * 18 17 16 38 38 H 1.07998 * 120.07900 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.3257 1.1810 6 1 3.7875 0.7210 1.9805 7 6 5.3992 1.9846 1.3500 8 7 5.6806 3.0420 0.6183 9 14 6.6283 1.3708 2.6157 10 1 7.0216 -0.0232 2.2883 11 1 7.8311 2.2416 2.6007 12 1 6.0090 1.4064 3.9650 13 6 4.2380 1.5672 -1.2617 14 6 4.4894 0.1961 -1.8343 15 6 3.5661 -0.3730 -2.6938 16 6 3.7864 -1.6333 -3.2200 17 6 4.9347 -2.3274 -2.8987 18 6 5.1758 -3.6978 -3.4773 19 6 5.8702 -1.7595 -2.0318 20 6 7.0613 -2.4767 -1.6890 21 7 8.0056 -3.0455 -1.4199 22 6 5.6389 -0.4889 -1.5002 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 6.5262 3.5023 0.7361 31 1 5.1905 2.0657 -1.0811 32 1 3.6492 2.1533 -1.9673 33 1 2.6673 0.1675 -2.9514 34 1 3.0596 -2.0734 -3.8866 35 1 4.7487 -4.4517 -2.8159 36 1 4.7048 -3.7661 -4.4579 37 1 6.2479 -3.8669 -3.5765 38 1 6.3587 -0.0437 -0.8293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701858452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:11 Heat of formation + Delta-G solvation = 43.942325 kcal Electronic energy + Delta-G solvation = -19112.682539 eV Core-core repulsion = 16340.682012 eV Total energy + Delta-G solvation = -2772.000527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62889 -38.13643 -37.29335 -34.69269 -34.06360 -32.21526 -32.14588 -29.23816 -27.30204 -26.12994 -24.62997 -23.45834 -22.14628 -21.70461 -19.27043 -18.26294 -17.05904 -16.59620 -16.42542 -15.90566 -15.55032 -15.32576 -15.19039 -14.78536 -14.34710 -14.12214 -14.06913 -13.90233 -13.62316 -13.32308 -13.24786 -13.00103 -12.81532 -12.64956 -12.56160 -12.41178 -12.17893 -12.05972 -11.82126 -11.69628 -11.67198 -11.22343 -10.50279 -9.76126 -9.34436 -8.57480 -7.83396 -5.39168 -0.09157 0.54767 1.38014 1.43717 1.47287 1.56548 1.96577 2.47101 2.90786 2.96778 3.23808 3.88905 3.91398 3.98500 4.27559 4.36390 4.42825 4.52571 4.59020 4.74821 4.77291 4.80513 4.82995 4.90794 4.98523 5.07056 5.14239 5.26778 5.31716 5.35222 5.51746 5.53881 5.55872 5.62414 5.73269 5.77390 5.92562 6.09419 6.39968 6.48164 7.17746 7.90019 8.37814 9.10990 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.009350 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.004235 B = 2993.915764 C = 4431.331204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.590 5.590 5 C -0.251 4.251 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.929 3.071 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.275 1.275 13 C 0.171 3.829 14 C -0.091 4.091 15 C -0.074 4.074 16 C -0.112 4.112 17 C -0.046 4.046 18 C -0.115 4.115 19 C -0.060 4.060 20 C 0.281 3.719 21 N -0.471 5.471 22 C -0.065 4.065 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.252 0.748 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.145 0.855 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.050 0.950 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -8.314 -10.377 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.309 5.309 5 C -0.381 4.381 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.552 5.552 9 Si 0.758 3.242 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.201 1.201 13 C 0.045 3.955 14 C -0.094 4.094 15 C -0.093 4.093 16 C -0.130 4.130 17 C -0.049 4.049 18 C -0.171 4.171 19 C -0.063 4.063 20 C -0.032 4.032 21 N -0.147 5.147 22 C -0.087 4.087 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.187 0.813 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.402 -9.030 -9.916 15.319 hybrid contribution 1.016 0.307 1.279 1.662 sum -6.386 -8.723 -8.638 13.837 Atomic orbital electron populations 1.21662 0.94529 1.01713 1.01835 1.22012 0.96046 0.98551 1.00849 1.21055 0.83038 0.94890 0.98999 1.43936 1.00822 1.84519 1.01648 1.19064 1.03238 1.21942 0.93899 0.93228 1.25410 1.01724 0.95413 0.99750 1.70041 1.23797 1.17676 1.43698 0.85937 0.79837 0.77568 0.80811 1.21759 1.21815 1.20058 1.19974 0.99550 0.90243 0.85712 1.20885 0.93115 0.99637 0.95729 1.21498 0.98113 0.95414 0.94283 1.21249 0.96701 0.94021 1.01026 1.20083 0.93073 0.97210 0.94516 1.20902 1.01985 0.91615 1.02635 1.16053 0.91105 0.94461 1.04720 1.26003 0.92804 0.92261 0.92169 1.81103 1.12157 1.11039 1.10427 1.20916 0.97869 0.92770 0.97141 0.92229 0.93469 0.91643 0.91735 0.95218 0.95455 0.92666 0.93885 0.90828 0.93126 0.83770 0.81343 0.89927 0.87735 0.93111 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.91 71.98 0.71 -2.61 16 2 C -0.13 -4.27 6.23 30.60 0.19 -4.08 16 3 C 0.15 5.47 5.72 86.38 0.49 5.96 16 4 N -0.59 -26.95 2.44 -706.35 -1.73 -28.67 16 5 C -0.25 -13.18 9.48 84.03 0.80 -12.38 16 6 H 0.05 2.68 7.93 -2.91 -0.02 2.65 16 7 C -0.03 -1.37 4.95 84.86 0.42 -0.95 16 8 N -0.91 -50.93 11.31 21.65 0.24 -50.68 16 9 Si 0.93 44.94 29.61 68.60 2.03 46.97 16 10 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 13 C 0.17 7.27 5.45 85.63 0.47 7.74 16 14 C -0.09 -3.25 5.44 -19.90 -0.11 -3.36 16 15 C -0.07 -1.95 7.86 22.33 0.18 -1.78 16 16 C -0.11 -2.40 9.69 22.23 0.22 -2.18 16 17 C -0.05 -1.14 5.91 -19.60 -0.12 -1.25 16 18 C -0.11 -2.11 9.61 71.24 0.68 -1.43 16 19 C -0.06 -1.96 5.73 -21.36 -0.12 -2.09 16 20 C 0.28 9.99 13.80 88.34 1.22 11.20 16 21 N -0.47 -18.01 18.53 18.99 0.35 -17.66 16 22 C -0.07 -2.50 9.41 22.54 0.21 -2.29 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 1.94 6.12 -2.39 -0.01 1.93 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 29 H 0.05 1.85 7.83 -2.38 -0.02 1.83 16 30 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.07 3.73 5.25 -2.38 -0.01 3.71 16 32 H 0.05 1.96 7.80 -2.39 -0.02 1.94 16 33 H 0.14 3.17 8.02 -2.91 -0.02 3.14 16 34 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 37 H 0.05 1.06 7.09 -2.39 -0.02 1.05 16 38 H 0.09 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -62.00 323.76 7.18 -54.81 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.04 Total: 4.72 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.24 Total: -9.50 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -1.13 Total: -97.01 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -62.00 7.18 -54.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701858452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.755 kcal (2) G-P(sol) polarization free energy of solvation -61.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds