Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00198 * 2 1 4 4 H 1.48499 * 109.46815 * 239.99922 * 3 2 1 5 5 H 1.48501 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47207 * 119.99598 * 3 2 1 7 7 C 1.39891 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99400 * 195.87731 * 7 2 1 9 9 C 1.41021 * 120.00230 * 15.87396 * 7 2 1 10 10 C 1.40673 * 120.26350 * 26.36614 * 9 7 2 11 11 C 1.38009 * 119.76551 * 180.02562 * 10 9 7 12 12 N 1.39851 * 119.83419 * 180.02562 * 11 10 9 13 13 C 1.47635 * 111.00111 * 155.60867 * 12 11 10 14 14 C 1.53649 * 88.15038 * 222.09590 * 13 12 11 15 15 C 1.46693 * 111.00432 * 59.92562 * 12 11 10 16 16 C 1.53061 * 120.99353 * 12.08258 * 15 12 11 17 17 C 1.53917 * 86.84272 * 209.64575 * 16 15 12 18 18 C 1.53069 * 120.98972 * 264.02031 * 15 12 11 19 19 C 1.39595 * 120.32180 * 359.97438 * 11 10 9 20 20 C 1.38055 * 120.55331 * 0.02562 * 19 11 10 21 21 C 1.38734 * 120.21813 * 359.97438 * 20 19 11 22 22 N 1.38865 * 120.16428 * 180.02562 * 21 20 19 23 23 H 0.97010 * 119.99659 * 4.98696 * 1 2 3 24 24 H 1.07999 * 120.11769 * 0.02562 * 10 9 7 25 25 H 1.09004 * 113.43636 * 336.91697 * 13 12 11 26 26 H 1.08991 * 113.44795 * 107.26842 * 13 12 11 27 27 H 1.08999 * 114.20906 * 271.76097 * 14 13 12 28 28 H 1.09006 * 114.20664 * 138.92158 * 14 13 12 29 29 H 1.09001 * 113.65107 * 324.12851 * 16 15 12 30 30 H 1.08996 * 113.65464 * 95.16178 * 16 15 12 31 31 H 1.08997 * 113.58675 * 270.27468 * 17 16 15 32 32 H 1.08999 * 113.66147 * 139.46258 * 17 16 15 33 33 H 1.09008 * 113.64857 * 264.84038 * 18 15 12 34 34 H 1.08994 * 113.65781 * 35.77443 * 18 15 12 35 35 H 1.08007 * 119.72383 * 180.27832 * 19 11 10 36 36 H 1.08003 * 119.89121 * 179.97438 * 20 19 11 37 37 H 0.97001 * 120.00022 * 354.69707 * 22 21 20 38 38 H 0.97000 * 120.00030 * 174.70352 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0575 -1.2292 0.2564 9 6 1.3436 -2.4097 -0.3330 10 6 0.2124 -2.3838 -1.1688 11 6 -0.4306 -3.5624 -1.4882 12 7 -1.5550 -3.5385 -2.3194 13 6 -1.7402 -4.8372 -2.9966 14 6 -2.0751 -4.0633 -4.2811 15 6 -1.2266 -2.9713 -3.6318 16 6 0.2281 -2.7504 -4.0533 17 6 -0.2863 -1.5766 -4.9058 18 6 -1.4795 -1.4928 -3.9370 19 6 0.0365 -4.7784 -0.9863 20 6 1.1453 -4.8192 -0.1650 21 6 1.8091 -3.6480 0.1706 22 7 2.9247 -3.6904 0.9965 23 1 -0.4850 0.8370 -0.0730 24 1 -0.1516 -1.4449 -1.5592 25 1 -0.8236 -5.4226 -3.0697 26 1 -2.5787 -5.4140 -2.6067 27 1 -3.1293 -3.8070 -4.3864 28 1 -1.6402 -4.4888 -5.1855 29 1 0.8789 -2.4438 -3.2344 30 1 0.6422 -3.5693 -4.6415 31 1 -0.5667 -1.8635 -5.9192 32 1 0.3603 -0.6995 -4.8781 33 1 -2.4324 -1.3053 -4.4321 34 1 -1.3079 -0.8348 -3.0853 35 1 -0.4715 -5.6955 -1.2461 36 1 1.4973 -5.7659 0.2176 37 1 3.1962 -4.5285 1.4022 38 1 3.4323 -2.8817 1.1677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706475754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = 85.092271 kcal Electronic energy + Delta-G solvation = -19874.102418 eV Core-core repulsion = 17103.886287 eV Total energy + Delta-G solvation = -2770.216131 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93125 -37.44982 -35.33764 -33.51102 -32.84767 -29.54363 -29.08967 -25.68400 -25.37495 -24.78872 -23.92926 -21.22731 -20.89590 -19.78292 -17.80488 -16.69138 -16.16028 -15.64832 -15.38185 -15.01612 -14.83190 -14.67701 -13.62193 -13.06322 -12.63523 -12.50096 -12.14899 -11.88053 -11.62034 -11.49403 -11.44081 -11.31563 -11.06220 -11.02510 -10.88411 -10.63839 -10.34956 -10.06494 -9.81581 -9.52857 -9.39577 -9.17225 -9.06528 -8.14202 -7.29346 -6.65427 -5.98291 -4.11816 2.84416 3.11291 3.12979 3.14809 3.24805 4.01334 4.56847 4.71049 4.88027 5.09110 5.19084 5.28662 5.29761 5.61071 5.69339 5.79976 5.85932 6.04017 6.09861 6.13778 6.19629 6.31983 6.35580 6.41633 6.49422 6.55731 6.62911 6.71699 7.02443 7.07915 7.23440 7.27120 7.56766 7.65826 7.77235 8.01643 8.21387 8.34292 8.64298 8.84347 8.88804 9.13018 9.20012 10.34441 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.009322 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.360063 B = 3002.912162 C = 4107.653198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.078 3.922 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.465 4.465 8 H 0.070 0.930 9 C 0.073 3.927 10 C -0.139 4.139 11 C 0.038 3.962 12 N -0.413 5.413 13 C 0.003 3.997 14 C -0.126 4.126 15 C 0.044 3.956 16 C -0.140 4.140 17 C -0.139 4.139 18 C -0.118 4.118 19 C -0.216 4.216 20 C -0.171 4.171 21 C 0.110 3.890 22 N -0.886 5.886 23 H 0.278 0.722 24 H 0.126 0.874 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.376 0.624 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 -3.495 -6.874 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.496 4.496 8 H 0.088 0.912 9 C 0.068 3.932 10 C -0.162 4.162 11 C -0.058 4.058 12 N -0.128 5.128 13 C -0.125 4.125 14 C -0.164 4.164 15 C -0.045 4.045 16 C -0.179 4.179 17 C -0.177 4.177 18 C -0.156 4.156 19 C -0.238 4.238 20 C -0.195 4.195 21 C 0.009 3.991 22 N -0.427 5.427 23 H 0.089 0.911 24 H 0.144 0.856 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.201 0.799 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.195 -3.017 -6.413 7.187 hybrid contribution 1.239 0.395 0.104 1.304 sum 0.044 -2.621 -6.309 6.832 Atomic orbital electron populations 1.69859 1.07101 1.29031 1.36396 1.25712 0.94641 1.00573 0.92923 0.86547 0.80202 0.81326 0.79657 1.19144 1.20501 1.19325 1.19054 0.96611 0.91208 1.42748 0.91240 1.17112 0.93538 0.90320 0.92270 1.20754 0.98671 0.95647 1.01092 1.18921 0.92354 0.94348 1.00215 1.66276 1.31122 1.08647 1.06742 1.23704 1.01333 0.93859 0.93636 1.22934 1.00028 0.96415 0.97021 1.23349 0.95808 0.95077 0.90278 1.23291 0.96308 0.97892 1.00376 1.22706 0.98484 0.99065 0.97486 1.22839 0.97484 0.96009 0.99281 1.20091 1.00709 0.94929 1.08069 1.19817 0.99647 0.94794 1.05228 1.17984 0.91240 0.93933 0.95981 1.41888 1.32422 1.11653 1.56778 0.91145 0.85604 0.90750 0.90654 0.89324 0.91119 0.87082 0.92342 0.91020 0.91523 0.92008 0.89007 0.89167 0.89559 0.79892 0.78149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.89 10.96 55.55 0.61 -20.28 16 2 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 3 Si 0.90 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.01 8.51 -37.91 -0.32 -12.33 16 8 H 0.07 1.70 6.65 -52.49 -0.35 1.35 16 9 C 0.07 1.90 5.57 -106.66 -0.59 1.30 16 10 C -0.14 -3.56 5.62 -38.75 -0.22 -3.77 16 11 C 0.04 0.89 4.70 -83.78 -0.39 0.50 16 12 N -0.41 -8.59 6.50 -168.96 -1.10 -9.69 16 13 C 0.00 0.05 6.54 -8.78 -0.06 -0.01 16 14 C -0.13 -1.88 8.21 -26.51 -0.22 -2.10 16 15 C 0.04 0.80 0.89 -137.46 -0.12 0.67 16 16 C -0.14 -2.53 6.87 -26.22 -0.18 -2.71 16 17 C -0.14 -2.18 8.08 -25.78 -0.21 -2.38 16 18 C -0.12 -2.05 7.74 -26.22 -0.20 -2.25 16 19 C -0.22 -4.90 8.69 -39.14 -0.34 -5.24 16 20 C -0.17 -3.87 9.87 -39.47 -0.39 -4.25 16 21 C 0.11 2.62 6.79 -83.23 -0.56 2.05 16 22 N -0.89 -17.76 8.97 32.75 0.29 -17.46 16 23 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.13 3.35 4.57 -52.49 -0.24 3.11 16 25 H 0.07 1.28 6.51 -51.93 -0.34 0.94 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 2.39 5.40 -51.93 -0.28 2.11 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.09 1.85 6.80 -51.93 -0.35 1.49 16 35 H 0.09 1.86 6.37 -52.48 -0.33 1.52 16 36 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.38 6.36 8.84 -40.82 -0.36 6.00 16 38 H 0.39 7.65 7.04 -40.82 -0.29 7.36 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -27.93 296.13 -9.72 -37.66 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -5.06 Total: 20.19 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.90 Total: -28.66 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.20 Total: -47.43 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.93 -9.72 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706475754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.749 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds