Wall clock time and date at job start Mon Mar 30 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00198 * 2 1 4 4 H 1.48499 * 109.46815 * 239.99922 * 3 2 1 5 5 H 1.48501 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47207 * 119.99598 * 3 2 1 7 7 C 1.39891 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99400 * 195.87731 * 7 2 1 9 9 C 1.41021 * 120.00230 * 15.87396 * 7 2 1 10 10 C 1.40673 * 120.26350 * 26.36614 * 9 7 2 11 11 C 1.38009 * 119.76551 * 180.02562 * 10 9 7 12 12 N 1.39851 * 119.83419 * 180.02562 * 11 10 9 13 13 C 1.47635 * 111.00111 * 155.60867 * 12 11 10 14 14 C 1.53649 * 88.15038 * 222.09590 * 13 12 11 15 15 C 1.46693 * 111.00432 * 59.92562 * 12 11 10 16 16 C 1.53061 * 120.99353 * 12.08258 * 15 12 11 17 17 C 1.53917 * 86.84272 * 209.64575 * 16 15 12 18 18 C 1.53069 * 120.98972 * 264.02031 * 15 12 11 19 19 C 1.39595 * 120.32180 * 359.97438 * 11 10 9 20 20 C 1.38055 * 120.55331 * 0.02562 * 19 11 10 21 21 C 1.38734 * 120.21813 * 359.97438 * 20 19 11 22 22 N 1.38865 * 120.16428 * 180.02562 * 21 20 19 23 23 H 0.97010 * 119.99659 * 4.98696 * 1 2 3 24 24 H 1.07999 * 120.11769 * 0.02562 * 10 9 7 25 25 H 1.09004 * 113.43636 * 336.91697 * 13 12 11 26 26 H 1.08991 * 113.44795 * 107.26842 * 13 12 11 27 27 H 1.08999 * 114.20906 * 271.76097 * 14 13 12 28 28 H 1.09006 * 114.20664 * 138.92158 * 14 13 12 29 29 H 1.09001 * 113.65107 * 324.12851 * 16 15 12 30 30 H 1.08996 * 113.65464 * 95.16178 * 16 15 12 31 31 H 1.08997 * 113.58675 * 270.27468 * 17 16 15 32 32 H 1.08999 * 113.66147 * 139.46258 * 17 16 15 33 33 H 1.09008 * 113.64857 * 264.84038 * 18 15 12 34 34 H 1.08994 * 113.65781 * 35.77443 * 18 15 12 35 35 H 1.08007 * 119.72383 * 180.27832 * 19 11 10 36 36 H 1.08003 * 119.89121 * 179.97438 * 20 19 11 37 37 H 0.97001 * 120.00022 * 354.69707 * 22 21 20 38 38 H 0.97000 * 120.00030 * 174.70352 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0575 -1.2292 0.2564 9 6 1.3436 -2.4097 -0.3330 10 6 0.2124 -2.3838 -1.1688 11 6 -0.4306 -3.5624 -1.4882 12 7 -1.5550 -3.5385 -2.3194 13 6 -1.7402 -4.8372 -2.9966 14 6 -2.0751 -4.0633 -4.2811 15 6 -1.2266 -2.9713 -3.6318 16 6 0.2281 -2.7504 -4.0533 17 6 -0.2863 -1.5766 -4.9058 18 6 -1.4795 -1.4928 -3.9370 19 6 0.0365 -4.7784 -0.9863 20 6 1.1453 -4.8192 -0.1650 21 6 1.8091 -3.6480 0.1706 22 7 2.9247 -3.6904 0.9965 23 1 -0.4850 0.8370 -0.0730 24 1 -0.1516 -1.4449 -1.5592 25 1 -0.8236 -5.4226 -3.0697 26 1 -2.5787 -5.4140 -2.6067 27 1 -3.1293 -3.8070 -4.3864 28 1 -1.6402 -4.4888 -5.1855 29 1 0.8789 -2.4438 -3.2344 30 1 0.6422 -3.5693 -4.6415 31 1 -0.5667 -1.8635 -5.9192 32 1 0.3603 -0.6995 -4.8781 33 1 -2.4324 -1.3053 -4.4321 34 1 -1.3079 -0.8348 -3.0853 35 1 -0.4715 -5.6955 -1.2461 36 1 1.4973 -5.7659 0.2176 37 1 3.1962 -4.5285 1.4022 38 1 3.4323 -2.8817 1.1677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706475754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:17 Heat of formation + Delta-G solvation = 67.247396 kcal Electronic energy + Delta-G solvation = -19874.876230 eV Core-core repulsion = 17103.886287 eV Total energy + Delta-G solvation = -2770.989943 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38510 -39.19561 -36.79026 -35.36075 -34.49554 -31.39218 -30.66928 -27.45707 -26.82985 -26.32948 -25.43308 -22.87371 -22.41738 -21.45251 -19.43892 -18.30396 -17.84998 -17.37574 -16.99675 -16.43706 -16.39525 -16.22297 -15.12412 -14.80170 -14.27090 -14.17368 -13.75490 -13.54446 -13.29715 -13.02830 -12.91173 -12.75447 -12.71456 -12.51615 -12.37832 -12.21404 -11.99675 -11.55337 -11.36705 -11.16412 -10.94187 -10.91666 -10.71558 -9.72614 -9.17526 -8.52487 -7.72917 -6.04370 1.05400 1.32661 1.38104 1.47455 1.53200 2.24908 2.82311 3.20559 3.54666 3.65604 3.70860 3.84599 3.90391 3.97455 4.29747 4.36832 4.50840 4.62348 4.74636 4.78600 4.81509 4.92103 4.93750 4.97624 5.07125 5.11493 5.21629 5.26422 5.31929 5.36941 5.54947 5.60137 5.79896 5.87867 6.02010 6.23948 6.41461 6.48612 6.90295 6.97558 7.05245 7.34373 7.55930 8.48816 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.009322 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.360063 B = 3002.912162 C = 4107.653198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.492 4.492 8 H 0.073 0.927 9 C 0.035 3.965 10 C -0.151 4.151 11 C 0.035 3.965 12 N -0.444 5.444 13 C 0.001 3.999 14 C -0.101 4.101 15 C 0.037 3.963 16 C -0.145 4.145 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.218 4.218 20 C -0.179 4.179 21 C 0.098 3.902 22 N -0.875 5.875 23 H 0.279 0.721 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.392 0.608 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -4.544 -8.404 9.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.523 4.523 8 H 0.091 0.909 9 C 0.030 3.970 10 C -0.174 4.174 11 C -0.062 4.062 12 N -0.159 5.159 13 C -0.127 4.127 14 C -0.139 4.139 15 C -0.052 4.052 16 C -0.184 4.184 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.240 4.240 20 C -0.203 4.203 21 C -0.004 4.004 22 N -0.418 5.418 23 H 0.089 0.911 24 H 0.123 0.877 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.220 0.780 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.378 -4.092 -7.932 9.031 hybrid contribution 1.253 0.602 0.573 1.504 sum -0.125 -3.489 -7.359 8.145 Atomic orbital electron populations 1.69956 1.08607 1.29808 1.37925 1.26497 0.95283 1.03706 0.92204 0.85485 0.78809 0.77008 0.79792 1.18798 1.20105 1.18508 1.19307 0.96908 0.92092 1.43993 0.90877 1.17494 0.94532 0.91548 0.93423 1.20670 0.99278 0.95755 1.01679 1.19084 0.92801 0.93863 1.00457 1.66234 1.30062 1.11512 1.08104 1.23792 1.01760 0.92685 0.94460 1.22917 1.00439 0.93547 0.96954 1.23586 0.96187 0.95998 0.89423 1.23167 0.95948 0.99463 0.99802 1.22691 0.96968 0.97799 0.98474 1.22783 0.99418 0.95283 0.98630 1.20446 1.00624 0.95539 1.07372 1.20157 0.99563 0.95525 1.05071 1.18166 0.92191 0.93705 0.96384 1.41772 1.31331 1.12645 1.56067 0.91082 0.87706 0.90934 0.89325 0.87694 0.88130 0.91367 0.90813 0.87354 0.92114 0.89737 0.93134 0.86883 0.86866 0.77968 0.77996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.92 10.96 21.82 0.24 -45.68 16 2 C 0.04 1.84 5.16 85.23 0.44 2.28 16 3 Si 0.97 39.70 29.59 68.60 2.03 41.73 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.49 -26.35 8.51 23.35 0.20 -26.15 16 8 H 0.07 3.69 6.65 -2.91 -0.02 3.67 16 9 C 0.04 1.90 5.57 -21.18 -0.12 1.79 16 10 C -0.15 -8.07 5.62 22.81 0.13 -7.94 16 11 C 0.03 1.66 4.70 38.13 0.18 1.84 16 12 N -0.44 -18.28 6.50 -688.47 -4.48 -22.76 16 13 C 0.00 0.02 6.54 82.69 0.54 0.56 16 14 C -0.10 -2.64 8.21 30.74 0.25 -2.39 16 15 C 0.04 1.29 0.89 -0.16 0.00 1.29 16 16 C -0.15 -5.18 6.87 30.92 0.21 -4.97 16 17 C -0.12 -3.63 8.08 31.21 0.25 -3.37 16 18 C -0.12 -4.23 7.74 30.93 0.24 -3.99 16 19 C -0.22 -9.74 8.69 22.55 0.20 -9.54 16 20 C -0.18 -7.98 9.87 22.34 0.22 -7.76 16 21 C 0.10 4.72 6.79 38.97 0.26 4.98 16 22 N -0.88 -34.89 8.97 -50.31 -0.45 -35.34 16 23 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 24 H 0.11 5.96 4.57 -2.91 -0.01 5.95 16 25 H 0.07 2.32 6.51 -2.39 -0.02 2.31 16 26 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.07 3.07 5.40 -2.39 -0.01 3.05 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.05 2.15 6.80 -2.39 -0.02 2.14 16 35 H 0.11 4.43 6.37 -2.91 -0.02 4.42 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.39 12.83 8.84 -92.71 -0.82 12.01 16 38 H 0.39 15.44 7.04 -92.71 -0.65 14.78 16 Total: -1.00 -62.98 296.13 -0.03 -63.01 By element: Atomic # 1 Polarization: 52.80 SS G_CDS: -0.38 Total: 52.42 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 3.01 Total: -53.38 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.69 Total: -103.78 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -62.98 -0.03 -63.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706475754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.258 kcal (2) G-P(sol) polarization free energy of solvation -62.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds