Wall clock time and date at job start Mon Mar 30 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00113 * 2 1 4 4 C 1.52992 * 109.47164 * 124.99905 * 3 2 1 5 5 H 1.09002 * 109.47273 * 304.99661 * 4 3 2 6 6 C 1.50707 * 109.47251 * 184.99893 * 4 3 2 7 7 C 1.30994 * 120.00065 * 240.00251 * 6 4 3 8 8 O 1.42906 * 109.47444 * 65.00086 * 4 3 2 9 9 C 1.42894 * 113.99822 * 210.00018 * 8 4 3 10 10 C 1.50706 * 109.47048 * 179.97438 * 9 8 4 11 11 C 1.38639 * 119.74839 * 89.99914 * 10 9 8 12 12 C 1.37620 * 120.24897 * 180.23652 * 11 10 9 13 13 C 1.40715 * 119.74131 * 359.51904 * 12 11 10 14 14 C 1.41399 * 120.24183 * 180.22985 * 13 12 11 15 15 H 1.07996 * 120.00044 * 204.52621 * 14 13 12 16 16 C 1.39950 * 119.99773 * 24.53568 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.71280 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.70913 * 16 14 13 19 19 H 1.48506 * 109.46742 * 59.99979 * 18 16 14 20 20 H 1.48505 * 109.46999 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47336 * 300.00007 * 18 16 14 22 22 C 1.40715 * 119.51261 * 0.47567 * 13 12 11 23 23 C 1.37609 * 119.74608 * 359.75586 * 22 13 12 24 24 H 1.07995 * 119.99994 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.00201 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99641 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.46942 * 4.99566 * 3 2 1 28 28 H 1.09007 * 109.46933 * 244.99910 * 3 2 1 29 29 H 1.07996 * 119.99639 * 59.99748 * 6 4 3 30 30 H 1.08002 * 120.00023 * 180.02562 * 7 6 4 31 31 H 1.07996 * 120.00295 * 359.97438 * 7 6 4 32 32 H 1.08994 * 109.47566 * 60.00043 * 9 8 4 33 33 H 1.09001 * 109.47808 * 299.99227 * 9 8 4 34 34 H 1.08000 * 119.87572 * 359.95847 * 11 10 9 35 35 H 1.07993 * 120.12561 * 179.72165 * 12 11 10 36 36 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.12510 * 179.73128 * 22 13 12 38 38 H 1.08002 * 119.87647 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4882 1.1469 2.1060 6 6 3.6990 2.6840 1.2541 7 6 5.0018 2.7795 1.1558 8 8 4.0296 0.3223 1.0046 9 6 4.5406 -0.2106 2.2280 10 6 5.5761 -1.2626 1.9239 11 6 6.9078 -0.8996 1.7936 12 6 7.8612 -1.8510 1.5112 13 6 7.4814 -3.1980 1.3648 14 6 8.4529 -4.1849 1.0794 15 1 8.1630 -5.1018 0.5879 16 6 9.7901 -3.9736 1.4342 17 7 10.0958 -3.0571 2.3162 18 14 11.1383 -5.0005 0.6484 19 1 11.1210 -4.7978 -0.8226 20 1 12.4569 -4.5837 1.1896 21 1 10.9087 -6.4355 0.9531 22 6 6.1269 -3.5548 1.4993 23 6 5.1899 -2.5859 1.7771 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.1008 3.5732 1.3870 30 1 5.4777 3.7476 1.2082 31 1 5.6000 1.8902 1.0232 32 1 3.7261 -0.6573 2.7981 33 1 4.9960 0.5899 2.8111 34 1 7.1974 0.1343 1.9096 35 1 8.8973 -1.5654 1.4056 36 1 11.0227 -2.9104 2.5619 37 1 5.8237 -4.5850 1.3846 38 1 4.1497 -2.8574 1.8804 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706597086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:23 Heat of formation + Delta-G solvation = 0.544479 kcal Electronic energy + Delta-G solvation = -18285.497476 eV Core-core repulsion = 15479.322326 eV Total energy + Delta-G solvation = -2806.175150 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -38.67675 -37.34268 -34.79869 -33.74975 -32.85861 -30.50762 -29.26800 -28.74093 -26.62255 -23.56251 -23.32718 -21.00245 -20.00636 -19.75548 -19.34539 -17.30596 -16.46791 -15.87436 -15.46584 -15.24376 -14.57742 -13.90950 -13.86519 -13.53544 -13.06786 -12.86535 -12.43803 -12.34376 -11.97103 -11.92920 -11.58898 -11.26790 -11.17332 -11.10628 -11.01910 -10.76286 -10.45038 -10.39769 -9.58872 -9.51170 -9.40746 -9.28834 -9.12435 -8.94133 -7.46370 -7.35046 -6.78641 -4.37573 2.26110 2.46544 2.69935 3.05412 3.07838 3.08883 3.15896 3.91526 4.20475 4.69515 4.79540 5.13705 5.20296 5.29498 5.42693 5.48037 5.65989 5.74846 5.82967 5.85478 5.99248 6.05850 6.12382 6.22976 6.38475 6.40394 6.68858 6.76776 6.79965 6.90087 6.94972 7.05735 7.27955 7.36287 7.60527 7.71515 7.87906 8.04170 8.11914 8.28557 8.62604 8.87603 8.96267 10.15804 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.031020 B = 0.004196 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.435465 B = 6671.119187 C = 7231.047200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 C -0.085 4.085 4 C 0.117 3.883 5 H 0.063 0.937 6 C -0.197 4.197 7 C -0.171 4.171 8 O -0.369 6.369 9 C 0.126 3.874 10 C -0.221 4.221 11 C -0.080 4.080 12 C -0.169 4.169 13 C 0.116 3.884 14 C -0.462 4.462 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.791 5.791 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.230 4.230 23 C -0.069 4.069 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.281 0.719 37 H 0.092 0.908 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 7.960 -1.431 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.155 4.155 3 C -0.122 4.122 4 C 0.059 3.941 5 H 0.081 0.919 6 C -0.215 4.215 7 C -0.207 4.207 8 O -0.288 6.288 9 C 0.051 3.949 10 C -0.223 4.223 11 C -0.099 4.099 12 C -0.188 4.188 13 C 0.114 3.886 14 C -0.491 4.491 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.250 4.250 23 C -0.088 4.088 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.134 0.866 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.818 7.990 -1.465 12.743 hybrid contribution 0.594 -0.284 0.044 0.660 sum -9.224 7.706 -1.421 12.103 Atomic orbital electron populations 1.23782 0.95884 1.01443 1.03577 1.23032 0.95653 0.99190 0.97589 1.20794 0.96899 0.95484 0.99027 1.20917 0.89083 0.86519 0.97617 0.91927 1.23443 0.97114 0.98078 1.02872 1.24009 0.96625 1.02228 0.97879 1.88124 1.55687 1.53534 1.31481 1.21157 0.94424 0.94057 0.85239 1.18744 0.92796 0.92743 1.17991 1.20515 0.92638 0.97266 0.99470 1.21290 0.98728 0.92477 1.06335 1.17643 0.91409 0.92465 0.87124 1.19604 0.91765 1.03444 1.34291 0.90404 1.25928 1.00127 0.95116 0.92994 1.69821 1.20731 1.28436 1.22598 0.86363 0.79099 0.80616 0.80632 1.18764 1.20308 1.18975 1.20947 0.94130 0.97144 1.12779 1.20353 0.96820 0.92785 0.98822 0.89004 0.88688 0.86644 0.90708 0.90024 0.87401 0.88977 0.86782 0.94501 0.94222 0.89544 0.86420 0.90762 0.88974 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.23 14.32 29.02 0.42 -1.81 16 2 C -0.14 -1.70 9.29 -36.03 -0.33 -2.04 16 3 C -0.08 -1.03 5.35 -27.89 -0.15 -1.18 16 4 C 0.12 1.61 2.64 -27.88 -0.07 1.54 16 5 H 0.06 0.83 7.79 -51.93 -0.40 0.42 16 6 C -0.20 -2.50 9.50 -36.02 -0.34 -2.84 16 7 C -0.17 -2.34 13.50 29.02 0.39 -1.95 16 8 O -0.37 -6.50 8.42 -35.23 -0.30 -6.80 16 9 C 0.13 2.33 5.29 36.01 0.19 2.52 16 10 C -0.22 -4.95 5.53 -104.32 -0.58 -5.53 16 11 C -0.08 -1.91 9.67 -39.66 -0.38 -2.29 16 12 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 13 C 0.12 3.13 5.57 -106.82 -0.60 2.53 16 14 C -0.46 -12.32 9.06 -37.74 -0.34 -12.66 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.40 10.95 55.55 0.61 -19.79 16 18 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.23 -5.75 9.80 -38.88 -0.38 -6.13 16 23 C -0.07 -1.59 9.67 -39.66 -0.38 -1.97 16 24 H 0.09 0.84 7.84 -52.49 -0.41 0.43 16 25 H 0.09 0.93 8.06 -52.48 -0.42 0.50 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 28 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.11 1.86 6.35 -52.49 -0.33 1.53 16 32 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 33 H 0.04 0.70 7.47 -51.93 -0.39 0.31 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -27.36 325.49 -8.42 -35.78 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.61 Total: 7.06 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: -2.99 Total: -34.75 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.61 Total: -19.79 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.30 Total: -6.80 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.36 -8.42 -35.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706597086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.322 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds