Wall clock time and date at job start Mon Mar 30 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00113 * 2 1 4 4 C 1.52992 * 109.47164 * 124.99905 * 3 2 1 5 5 H 1.09002 * 109.47273 * 304.99661 * 4 3 2 6 6 C 1.50707 * 109.47251 * 184.99893 * 4 3 2 7 7 C 1.30994 * 120.00065 * 240.00251 * 6 4 3 8 8 O 1.42906 * 109.47444 * 65.00086 * 4 3 2 9 9 C 1.42894 * 113.99822 * 210.00018 * 8 4 3 10 10 C 1.50706 * 109.47048 * 179.97438 * 9 8 4 11 11 C 1.38639 * 119.74839 * 89.99914 * 10 9 8 12 12 C 1.37620 * 120.24897 * 180.23652 * 11 10 9 13 13 C 1.40715 * 119.74131 * 359.51904 * 12 11 10 14 14 C 1.41399 * 120.24183 * 180.22985 * 13 12 11 15 15 H 1.07996 * 120.00044 * 204.52621 * 14 13 12 16 16 C 1.39950 * 119.99773 * 24.53568 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.71280 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.70913 * 16 14 13 19 19 H 1.48506 * 109.46742 * 59.99979 * 18 16 14 20 20 H 1.48505 * 109.46999 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47336 * 300.00007 * 18 16 14 22 22 C 1.40715 * 119.51261 * 0.47567 * 13 12 11 23 23 C 1.37609 * 119.74608 * 359.75586 * 22 13 12 24 24 H 1.07995 * 119.99994 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.00201 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99641 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.46942 * 4.99566 * 3 2 1 28 28 H 1.09007 * 109.46933 * 244.99910 * 3 2 1 29 29 H 1.07996 * 119.99639 * 59.99748 * 6 4 3 30 30 H 1.08002 * 120.00023 * 180.02562 * 7 6 4 31 31 H 1.07996 * 120.00295 * 359.97438 * 7 6 4 32 32 H 1.08994 * 109.47566 * 60.00043 * 9 8 4 33 33 H 1.09001 * 109.47808 * 299.99227 * 9 8 4 34 34 H 1.08000 * 119.87572 * 359.95847 * 11 10 9 35 35 H 1.07993 * 120.12561 * 179.72165 * 12 11 10 36 36 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.12510 * 179.73128 * 22 13 12 38 38 H 1.08002 * 119.87647 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4882 1.1469 2.1060 6 6 3.6990 2.6840 1.2541 7 6 5.0018 2.7795 1.1558 8 8 4.0296 0.3223 1.0046 9 6 4.5406 -0.2106 2.2280 10 6 5.5761 -1.2626 1.9239 11 6 6.9078 -0.8996 1.7936 12 6 7.8612 -1.8510 1.5112 13 6 7.4814 -3.1980 1.3648 14 6 8.4529 -4.1849 1.0794 15 1 8.1630 -5.1018 0.5879 16 6 9.7901 -3.9736 1.4342 17 7 10.0958 -3.0571 2.3162 18 14 11.1383 -5.0005 0.6484 19 1 11.1210 -4.7978 -0.8226 20 1 12.4569 -4.5837 1.1896 21 1 10.9087 -6.4355 0.9531 22 6 6.1269 -3.5548 1.4993 23 6 5.1899 -2.5859 1.7771 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.1008 3.5732 1.3870 30 1 5.4777 3.7476 1.2082 31 1 5.6000 1.8902 1.0232 32 1 3.7261 -0.6573 2.7981 33 1 4.9960 0.5899 2.8111 34 1 7.1974 0.1343 1.9096 35 1 8.8973 -1.5654 1.4056 36 1 11.0227 -2.9104 2.5619 37 1 5.8237 -4.5850 1.3846 38 1 4.1497 -2.8574 1.8804 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706597086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:10 Heat of formation + Delta-G solvation = -11.669565 kcal Electronic energy + Delta-G solvation = -18286.027117 eV Core-core repulsion = 15479.322326 eV Total energy + Delta-G solvation = -2806.704790 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.06239 -39.04317 -36.06724 -35.37183 -33.98720 -32.26124 -31.18061 -29.85257 -28.32323 -25.26459 -24.37433 -22.92048 -21.82308 -20.76995 -20.32441 -19.24387 -17.69356 -17.17171 -17.08262 -16.57990 -15.94414 -15.65854 -15.48853 -14.77739 -14.44799 -14.09585 -14.02240 -13.82427 -13.54315 -13.36357 -13.07080 -12.82145 -12.72761 -12.55741 -12.24770 -12.19046 -11.98328 -11.76436 -11.39006 -11.28249 -11.01897 -10.51614 -10.42739 -9.97252 -9.39607 -9.28564 -8.66509 -6.36963 0.87878 1.12963 1.32252 1.37376 1.48339 1.51087 1.52019 2.19752 2.61015 3.09960 3.77706 3.84215 4.16499 4.17113 4.25738 4.30992 4.37103 4.50731 4.52514 4.57410 4.60481 4.65964 4.82511 5.00743 5.04422 5.10620 5.13951 5.21227 5.34604 5.43829 5.67903 5.71094 5.79906 5.84896 5.93170 5.93555 6.07668 6.20961 6.35549 6.51003 6.67175 6.91195 7.00735 8.30635 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.031020 B = 0.004196 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.435465 B = 6671.119187 C = 7231.047200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.165 4.165 3 C -0.078 4.078 4 C 0.108 3.892 5 H 0.075 0.925 6 C -0.185 4.185 7 C -0.190 4.190 8 O -0.389 6.389 9 C 0.136 3.864 10 C -0.216 4.216 11 C -0.086 4.086 12 C -0.193 4.193 13 C 0.084 3.916 14 C -0.501 4.501 15 H 0.076 0.924 16 C 0.036 3.964 17 N -0.822 5.822 18 Si 0.984 3.016 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.258 1.258 22 C -0.247 4.247 23 C -0.073 4.073 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.289 0.711 37 H 0.098 0.902 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 9.145 -1.422 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.183 4.183 3 C -0.115 4.115 4 C 0.050 3.950 5 H 0.092 0.908 6 C -0.203 4.203 7 C -0.226 4.226 8 O -0.309 6.309 9 C 0.060 3.940 10 C -0.217 4.217 11 C -0.104 4.104 12 C -0.213 4.213 13 C 0.082 3.918 14 C -0.531 4.531 15 H 0.094 0.906 16 C -0.179 4.179 17 N -0.448 5.448 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.182 1.182 22 C -0.267 4.267 23 C -0.091 4.091 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.159 0.841 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.549 9.185 -1.451 14.828 hybrid contribution 0.917 -0.557 0.058 1.075 sum -10.632 8.628 -1.393 13.763 Atomic orbital electron populations 1.24003 0.95175 1.02824 1.00413 1.22922 0.96384 0.98453 1.00553 1.20776 0.96810 0.96367 0.97558 1.21243 0.88632 0.86027 0.99054 0.90755 1.23650 0.96928 0.98543 1.01209 1.23973 0.97040 1.01982 0.99633 1.88068 1.56985 1.54932 1.30899 1.20980 0.93918 0.93319 0.85777 1.19209 0.93328 0.93851 1.15361 1.20762 0.93106 0.97672 0.98864 1.21266 0.98585 0.93071 1.08344 1.17998 0.92596 0.93021 0.88226 1.19863 0.93244 1.03865 1.36085 0.90558 1.26791 1.01938 0.96318 0.92888 1.69871 1.21705 1.29797 1.23432 0.85237 0.76074 0.78936 0.79370 1.18579 1.18981 1.18221 1.21168 0.94027 0.98133 1.13354 1.20686 0.97867 0.92706 0.97825 0.86841 0.88029 0.89167 0.87698 0.91346 0.84125 0.87005 0.89955 0.92864 0.93391 0.87876 0.88062 0.90001 0.88348 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 14.32 67.78 0.97 -2.43 16 2 C -0.16 -3.80 9.29 25.65 0.24 -3.57 16 3 C -0.08 -1.70 5.35 29.84 0.16 -1.54 16 4 C 0.11 2.72 2.64 29.85 0.08 2.80 16 5 H 0.07 1.72 7.79 -2.39 -0.02 1.70 16 6 C -0.19 -4.19 9.50 25.65 0.24 -3.95 16 7 C -0.19 -4.92 13.50 67.79 0.92 -4.00 16 8 O -0.39 -13.30 8.42 -148.98 -1.25 -14.55 16 9 C 0.14 4.81 5.29 71.24 0.38 5.18 16 10 C -0.22 -9.64 5.53 -19.67 -0.11 -9.75 16 11 C -0.09 -4.15 9.67 22.22 0.21 -3.93 16 12 C -0.19 -10.58 8.70 22.73 0.20 -10.38 16 13 C 0.08 4.71 5.57 -21.29 -0.12 4.59 16 14 C -0.50 -27.83 9.06 23.46 0.21 -27.62 16 15 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 16 C 0.04 1.85 5.14 85.26 0.44 2.29 16 17 N -0.82 -43.74 10.95 21.83 0.24 -43.50 16 18 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 C -0.25 -12.66 9.80 22.73 0.22 -12.44 16 23 C -0.07 -3.33 9.67 22.22 0.21 -3.11 16 24 H 0.11 1.58 7.84 -2.91 -0.02 1.56 16 25 H 0.10 1.70 8.06 -2.91 -0.02 1.67 16 26 H 0.09 2.52 8.06 -2.91 -0.02 2.49 16 27 H 0.10 1.64 7.79 -2.39 -0.02 1.62 16 28 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.11 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.08 2.69 6.35 -2.91 -0.02 2.67 16 32 H 0.05 1.71 8.02 -2.39 -0.02 1.69 16 33 H 0.05 1.61 7.47 -2.39 -0.02 1.60 16 34 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.10 5.76 6.16 -2.91 -0.02 5.75 16 36 H 0.29 13.86 8.30 -92.70 -0.77 13.10 16 37 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 38 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -61.16 325.49 6.28 -54.88 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.01 Total: 30.28 kcal Atomic # 6 Polarization: -72.11 SS G_CDS: 4.26 Total: -67.85 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.24 Total: -43.50 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.25 Total: -14.55 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -61.16 6.28 -54.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706597086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.207 kcal (2) G-P(sol) polarization free energy of solvation -61.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds