Wall clock time and date at job start Mon Mar 30 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86792 * 120.00189 * 2 1 4 4 H 1.48507 * 109.47279 * 275.19899 * 3 2 1 5 5 H 1.48500 * 109.47267 * 35.19535 * 3 2 1 6 6 H 1.48494 * 109.47565 * 155.19922 * 3 2 1 7 7 C 1.39893 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99818 * 343.04548 * 7 2 1 9 9 C 1.41027 * 119.99965 * 163.04527 * 7 2 1 10 10 C 1.40668 * 120.26563 * 331.63913 * 9 7 2 11 11 C 1.38009 * 119.76678 * 180.29950 * 10 9 7 12 12 N 1.39855 * 119.83419 * 179.97438 * 11 10 9 13 13 C 1.47500 * 110.99285 * 209.17911 * 12 11 10 14 14 C 1.53236 * 87.85855 * 139.59522 * 13 12 11 15 15 H 1.08999 * 116.40725 * 90.33134 * 14 13 12 16 16 C 1.53683 * 114.33439 * 228.79231 * 14 13 12 17 17 C 1.54927 * 105.55237 * 62.52073 * 16 14 13 18 18 C 1.53479 * 107.41805 * 17.26243 * 17 16 14 19 19 C 1.47686 * 111.00040 * 305.12358 * 12 11 10 20 20 H 1.08997 * 115.70107 * 102.72354 * 19 12 11 21 21 C 1.39599 * 120.32296 * 359.97438 * 11 10 9 22 22 C 1.38056 * 120.54884 * 0.02562 * 21 11 10 23 23 C 1.38743 * 120.22420 * 0.02562 * 22 21 11 24 24 N 1.38860 * 120.16744 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99666 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.11555 * 0.27698 * 10 9 7 27 27 H 1.09010 * 113.48713 * 254.33905 * 13 12 11 28 28 H 1.08997 * 113.49129 * 24.84096 * 13 12 11 29 29 H 1.09002 * 110.10817 * 181.08219 * 16 14 13 30 30 H 1.08998 * 110.11006 * 302.71627 * 16 14 13 31 31 H 1.09000 * 109.59905 * 257.90387 * 17 16 14 32 32 H 1.09000 * 110.11570 * 136.91634 * 17 16 14 33 33 H 1.09000 * 109.87140 * 240.05134 * 18 17 16 34 34 H 1.09003 * 109.87060 * 118.93702 * 18 17 16 35 35 H 1.08000 * 119.72587 * 180.02562 * 21 11 10 36 36 H 1.07999 * 119.89251 * 179.97438 * 22 21 11 37 37 H 0.97001 * 119.99716 * 185.20466 * 24 23 22 38 38 H 0.97001 * 119.99618 * 5.20504 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 2.3807 2.1098 -1.3944 5 1 1.4997 2.6184 0.8069 6 1 3.5912 1.4109 0.5872 7 6 2.0085 -1.2115 0.0005 8 1 1.5036 -2.1264 0.2737 9 6 3.3728 -1.2382 -0.3556 10 6 3.8928 -0.2786 -1.2430 11 6 5.2281 -0.3181 -1.5894 12 7 5.7465 0.6350 -2.4719 13 6 6.8815 0.0849 -3.2366 14 6 6.3302 0.8123 -4.4676 15 1 6.6932 1.8264 -4.6343 16 6 6.2252 -0.0633 -5.7262 17 6 5.2174 -1.1846 -5.3693 18 6 4.4380 -0.7243 -4.1298 19 6 4.9806 0.6590 -3.7345 20 1 4.2772 1.4841 -3.8450 21 6 6.0639 -1.3046 -1.0630 22 6 5.5675 -2.2529 -0.1911 23 6 4.2284 -2.2351 0.1717 24 7 3.7303 -3.1898 1.0485 25 1 -0.4849 0.8401 -0.0004 26 1 3.2492 0.4862 -1.6521 27 1 7.8502 0.4611 -2.9074 28 1 6.8588 -1.0010 -3.3272 29 1 5.8451 0.5250 -6.5614 30 1 7.2008 -0.4810 -5.9747 31 1 5.7577 -2.1047 -5.1471 32 1 4.5304 -1.3493 -6.1994 33 1 4.5909 -1.4296 -3.3130 34 1 3.3762 -0.6521 -4.3655 35 1 7.1074 -1.3262 -1.3403 36 1 6.2234 -3.0116 0.2095 37 1 2.7802 -3.2219 1.2418 38 1 4.3323 -3.8244 1.4676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706851331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:48 Heat of formation + Delta-G solvation = 60.263658 kcal Electronic energy + Delta-G solvation = -19841.359287 eV Core-core repulsion = 17070.066506 eV Total energy + Delta-G solvation = -2771.292781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33488 -37.76221 -34.40380 -33.47083 -32.39258 -30.41456 -29.50290 -27.43985 -25.93433 -24.37505 -24.18122 -21.53176 -20.49645 -19.32618 -18.17635 -17.14739 -16.48888 -16.10058 -15.92380 -15.15655 -14.89527 -14.47808 -13.47922 -13.28352 -13.19327 -12.79279 -12.64106 -12.18059 -11.92332 -11.68705 -11.60591 -11.46531 -10.98608 -10.76662 -10.75176 -10.64754 -10.38473 -10.17941 -9.97660 -9.91142 -9.60654 -9.36604 -9.04825 -8.38064 -7.59395 -6.85157 -6.23484 -4.26276 2.67027 2.76843 3.22543 3.29864 3.45902 4.09883 4.36486 4.53486 4.66376 4.84538 5.13139 5.26841 5.38349 5.50792 5.55677 5.60105 5.72623 5.78899 5.86644 5.96025 6.02267 6.04966 6.18256 6.25993 6.27706 6.38370 6.50848 6.55061 6.65195 6.74687 6.92609 7.19609 7.26103 7.37565 7.47961 7.80790 7.94423 8.16970 8.37708 8.48648 8.79314 8.94502 8.99946 10.17601 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.008679 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.257024 B = 3225.407249 C = 3850.019827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.243 1.243 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.060 3.940 10 C -0.220 4.220 11 C 0.062 3.938 12 N -0.428 5.428 13 C 0.015 3.985 14 C -0.126 4.126 15 H 0.102 0.898 16 C -0.111 4.111 17 C -0.119 4.119 18 C -0.139 4.139 19 C 0.037 3.963 20 H 0.094 0.906 21 C -0.215 4.215 22 C -0.164 4.164 23 C 0.125 3.875 24 N -0.882 5.882 25 H 0.282 0.718 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.395 0.605 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.002 -0.846 -7.244 11.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.132 4.132 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.166 1.166 7 C -0.477 4.477 8 H 0.104 0.896 9 C 0.055 3.945 10 C -0.242 4.242 11 C -0.035 4.035 12 N -0.144 5.144 13 C -0.113 4.113 14 C -0.144 4.144 15 H 0.120 0.880 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.177 4.177 19 C -0.071 4.071 20 H 0.112 0.888 21 C -0.237 4.237 22 C -0.189 4.189 23 C 0.023 3.977 24 N -0.423 5.423 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.224 0.776 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 8.799 -0.083 -6.853 11.153 hybrid contribution -0.079 -0.119 0.032 0.147 sum 8.720 -0.202 -6.821 11.073 Atomic orbital electron populations 1.69716 1.07927 1.29918 1.36910 1.26044 0.94675 1.01471 0.91050 0.86293 0.81187 0.79852 0.78708 1.19945 1.22542 1.16628 1.19069 0.92609 0.95596 1.40458 0.89600 1.17253 0.93012 0.91632 0.92648 1.20388 0.93663 1.04430 1.05717 1.18725 0.93723 0.92505 0.98521 1.66568 1.05043 1.36544 1.06259 1.23705 0.96218 0.99144 0.92227 1.23425 0.97669 0.99585 0.93765 0.87966 1.22129 0.98991 0.96705 0.97090 1.22180 0.97522 0.98238 0.97771 1.22402 1.00030 0.96712 0.98569 1.23896 0.95637 0.97757 0.89829 0.88790 1.20032 0.97623 0.99055 1.07020 1.19893 0.93632 1.01470 1.03886 1.17857 0.91923 0.93418 0.94490 1.41958 1.10521 1.37334 1.52510 0.90753 0.88010 0.90642 0.90316 0.91785 0.91659 0.92143 0.92047 0.88952 0.91449 0.88699 0.88932 0.77647 0.79559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.16 13.93 55.55 0.77 -21.38 16 2 C 0.08 2.26 5.43 -17.33 -0.09 2.16 16 3 Si 0.91 22.12 24.43 -169.99 -4.15 17.97 16 4 H -0.27 -6.54 6.70 56.52 0.38 -6.17 16 5 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.24 -6.19 6.74 56.52 0.38 -5.81 16 7 C -0.45 -11.92 9.01 -37.91 -0.34 -12.26 16 8 H 0.09 2.33 6.88 -52.48 -0.36 1.97 16 9 C 0.06 1.52 5.17 -106.66 -0.55 0.96 16 10 C -0.22 -5.37 5.25 -38.75 -0.20 -5.57 16 11 C 0.06 1.37 3.64 -83.77 -0.30 1.07 16 12 N -0.43 -8.44 6.49 -171.80 -1.12 -9.55 16 13 C 0.02 0.24 5.70 -7.51 -0.04 0.20 16 14 C -0.13 -1.76 5.23 -89.44 -0.47 -2.23 16 15 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 16 C -0.11 -1.33 6.56 -25.36 -0.17 -1.49 16 17 C -0.12 -1.60 6.21 -25.47 -0.16 -1.76 16 18 C -0.14 -2.36 4.99 -26.09 -0.13 -2.49 16 19 C 0.04 0.64 4.56 -70.32 -0.32 0.32 16 20 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 21 C -0.22 -4.53 8.62 -39.14 -0.34 -4.87 16 22 C -0.16 -3.46 9.87 -39.46 -0.39 -3.85 16 23 C 0.13 2.84 6.79 -83.22 -0.56 2.28 16 24 N -0.88 -17.01 8.97 32.75 0.29 -16.71 16 25 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 26 H 0.10 2.58 4.18 -52.49 -0.22 2.36 16 27 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.08 1.27 5.86 -51.93 -0.30 0.96 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.83 5.47 -51.93 -0.28 1.54 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.80 6.70 -52.49 -0.35 1.45 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.39 7.68 7.08 -40.82 -0.29 7.40 16 38 H 0.38 6.04 8.84 -40.82 -0.36 5.68 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -28.23 287.88 -9.09 -37.32 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -5.15 Total: 15.55 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -4.07 Total: -27.53 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.05 Total: -47.65 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.15 Total: 17.97 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.23 -9.09 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706851331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.581 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds