Wall clock time and date at job start Mon Mar 30 2020 07:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86792 * 120.00189 * 2 1 4 4 H 1.48507 * 109.47279 * 275.19899 * 3 2 1 5 5 H 1.48500 * 109.47267 * 35.19535 * 3 2 1 6 6 H 1.48494 * 109.47565 * 155.19922 * 3 2 1 7 7 C 1.39893 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99818 * 343.04548 * 7 2 1 9 9 C 1.41027 * 119.99965 * 163.04527 * 7 2 1 10 10 C 1.40668 * 120.26563 * 331.63913 * 9 7 2 11 11 C 1.38009 * 119.76678 * 180.29950 * 10 9 7 12 12 N 1.39855 * 119.83419 * 179.97438 * 11 10 9 13 13 C 1.47500 * 110.99285 * 209.17911 * 12 11 10 14 14 C 1.53236 * 87.85855 * 139.59522 * 13 12 11 15 15 H 1.08999 * 116.40725 * 90.33134 * 14 13 12 16 16 C 1.53683 * 114.33439 * 228.79231 * 14 13 12 17 17 C 1.54927 * 105.55237 * 62.52073 * 16 14 13 18 18 C 1.53479 * 107.41805 * 17.26243 * 17 16 14 19 19 C 1.47686 * 111.00040 * 305.12358 * 12 11 10 20 20 H 1.08997 * 115.70107 * 102.72354 * 19 12 11 21 21 C 1.39599 * 120.32296 * 359.97438 * 11 10 9 22 22 C 1.38056 * 120.54884 * 0.02562 * 21 11 10 23 23 C 1.38743 * 120.22420 * 0.02562 * 22 21 11 24 24 N 1.38860 * 120.16744 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99666 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.11555 * 0.27698 * 10 9 7 27 27 H 1.09010 * 113.48713 * 254.33905 * 13 12 11 28 28 H 1.08997 * 113.49129 * 24.84096 * 13 12 11 29 29 H 1.09002 * 110.10817 * 181.08219 * 16 14 13 30 30 H 1.08998 * 110.11006 * 302.71627 * 16 14 13 31 31 H 1.09000 * 109.59905 * 257.90387 * 17 16 14 32 32 H 1.09000 * 110.11570 * 136.91634 * 17 16 14 33 33 H 1.09000 * 109.87140 * 240.05134 * 18 17 16 34 34 H 1.09003 * 109.87060 * 118.93702 * 18 17 16 35 35 H 1.08000 * 119.72587 * 180.02562 * 21 11 10 36 36 H 1.07999 * 119.89251 * 179.97438 * 22 21 11 37 37 H 0.97001 * 119.99716 * 185.20466 * 24 23 22 38 38 H 0.97001 * 119.99618 * 5.20504 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 2.3807 2.1098 -1.3944 5 1 1.4997 2.6184 0.8069 6 1 3.5912 1.4109 0.5872 7 6 2.0085 -1.2115 0.0005 8 1 1.5036 -2.1264 0.2737 9 6 3.3728 -1.2382 -0.3556 10 6 3.8928 -0.2786 -1.2430 11 6 5.2281 -0.3181 -1.5894 12 7 5.7465 0.6350 -2.4719 13 6 6.8815 0.0849 -3.2366 14 6 6.3302 0.8123 -4.4676 15 1 6.6932 1.8264 -4.6343 16 6 6.2252 -0.0633 -5.7262 17 6 5.2174 -1.1846 -5.3693 18 6 4.4380 -0.7243 -4.1298 19 6 4.9806 0.6590 -3.7345 20 1 4.2772 1.4841 -3.8450 21 6 6.0639 -1.3046 -1.0630 22 6 5.5675 -2.2529 -0.1911 23 6 4.2284 -2.2351 0.1717 24 7 3.7303 -3.1898 1.0485 25 1 -0.4849 0.8401 -0.0004 26 1 3.2492 0.4862 -1.6521 27 1 7.8502 0.4611 -2.9074 28 1 6.8588 -1.0010 -3.3272 29 1 5.8451 0.5250 -6.5614 30 1 7.2008 -0.4810 -5.9747 31 1 5.7577 -2.1047 -5.1471 32 1 4.5304 -1.3493 -6.1994 33 1 4.5909 -1.4296 -3.3130 34 1 3.3762 -0.6521 -4.3655 35 1 7.1074 -1.3262 -1.3403 36 1 6.2234 -3.0116 0.2095 37 1 2.7802 -3.2219 1.2418 38 1 4.3323 -3.8244 1.4676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706851331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:47 Heat of formation + Delta-G solvation = 40.827139 kcal Electronic energy + Delta-G solvation = -19842.202117 eV Core-core repulsion = 17070.066506 eV Total energy + Delta-G solvation = -2772.135611 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.70322 -39.47294 -35.87177 -35.36037 -33.86759 -32.24989 -30.88981 -28.83361 -27.55112 -26.00886 -25.57382 -23.28538 -21.97435 -20.71187 -19.60931 -18.94138 -18.09483 -17.59790 -17.45384 -16.71806 -16.34170 -16.17740 -15.08597 -14.85433 -14.77539 -14.46860 -13.96083 -13.84943 -13.45389 -13.31385 -13.19720 -13.01736 -12.66853 -12.50364 -12.13479 -11.87701 -11.84749 -11.71389 -11.58884 -11.31604 -11.09206 -11.05043 -10.86837 -9.91409 -9.45629 -8.84680 -7.93755 -6.23146 0.83110 0.98375 1.25009 1.35800 1.46597 2.12102 2.63294 3.10266 3.37412 3.54203 3.57470 3.74262 4.10095 4.19446 4.22546 4.33030 4.44058 4.52752 4.60893 4.61817 4.71200 4.79036 4.83451 4.84893 5.03318 5.10008 5.17466 5.21968 5.28713 5.38591 5.44745 5.45918 5.49180 5.68576 5.71792 6.08488 6.18464 6.24260 6.60618 6.68122 6.87930 7.15323 7.45845 8.23897 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.008679 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.257024 B = 3225.407249 C = 3850.019827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.053 3.947 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.469 4.469 8 H 0.067 0.933 9 C 0.029 3.971 10 C -0.225 4.225 11 C 0.057 3.943 12 N -0.453 5.453 13 C 0.016 3.984 14 C -0.102 4.102 15 H 0.120 0.880 16 C -0.102 4.102 17 C -0.115 4.115 18 C -0.136 4.136 19 C 0.020 3.980 20 H 0.079 0.921 21 C -0.201 4.201 22 C -0.164 4.164 23 C 0.117 3.883 24 N -0.872 5.872 25 H 0.287 0.713 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.393 0.607 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.378 -1.022 -8.729 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.160 4.160 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.500 4.500 8 H 0.085 0.915 9 C 0.024 3.976 10 C -0.247 4.247 11 C -0.041 4.041 12 N -0.169 5.169 13 C -0.111 4.111 14 C -0.121 4.121 15 H 0.138 0.862 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.174 4.174 19 C -0.088 4.088 20 H 0.097 0.903 21 C -0.222 4.222 22 C -0.189 4.189 23 C 0.014 3.986 24 N -0.414 5.414 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.221 0.779 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.191 -0.275 -8.331 14.769 hybrid contribution -0.918 -0.153 0.445 1.031 sum 11.274 -0.428 -7.886 13.765 Atomic orbital electron populations 1.69739 1.08540 1.30579 1.39831 1.26472 0.95110 1.03136 0.91274 0.85553 0.79246 0.78158 0.78227 1.20296 1.21362 1.18729 1.19078 0.93672 0.95067 1.42213 0.91518 1.17420 0.92951 0.93336 0.93912 1.20391 0.94790 1.03833 1.05693 1.18895 0.92934 0.93233 0.99009 1.66527 1.07006 1.36268 1.07111 1.23793 0.95621 0.99344 0.92373 1.23415 0.93976 1.00761 0.93906 0.86204 1.22127 0.99763 0.95759 0.96310 1.22168 0.97847 0.99060 0.96194 1.22312 0.99755 0.95962 0.99410 1.24037 0.97398 0.97500 0.89846 0.90312 1.20478 0.98830 0.97644 1.05282 1.20293 0.93257 1.02036 1.03291 1.18052 0.92505 0.93270 0.94792 1.41885 1.10833 1.36921 1.51790 0.90243 0.89868 0.88860 0.90308 0.90017 0.89138 0.91595 0.90753 0.91962 0.93244 0.85769 0.85524 0.77890 0.77412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.58 13.93 21.82 0.30 -48.28 16 2 C 0.05 2.93 5.43 85.23 0.46 3.40 16 3 Si 0.96 47.59 24.43 68.60 1.68 49.27 16 4 H -0.28 -13.57 6.70 99.48 0.67 -12.90 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.26 -13.67 6.74 99.48 0.67 -13.00 16 7 C -0.47 -26.15 9.01 23.35 0.21 -25.94 16 8 H 0.07 3.84 6.88 -2.91 -0.02 3.82 16 9 C 0.03 1.51 5.17 -21.18 -0.11 1.40 16 10 C -0.22 -11.18 5.25 22.81 0.12 -11.06 16 11 C 0.06 2.45 3.64 38.13 0.14 2.59 16 12 N -0.45 -17.12 6.49 -697.44 -4.53 -21.65 16 13 C 0.02 0.45 5.70 83.59 0.48 0.93 16 14 C -0.10 -2.49 5.23 -10.03 -0.05 -2.54 16 15 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 16 C -0.10 -1.97 6.56 31.48 0.21 -1.76 16 17 C -0.11 -2.76 6.21 31.41 0.20 -2.56 16 18 C -0.14 -4.56 4.99 31.01 0.15 -4.41 16 19 C 0.02 0.68 4.56 42.80 0.20 0.87 16 20 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 21 C -0.20 -7.90 8.62 22.56 0.19 -7.71 16 22 C -0.16 -6.49 9.87 22.35 0.22 -6.27 16 23 C 0.12 5.25 6.79 38.97 0.26 5.51 16 24 N -0.87 -33.06 8.97 -50.31 -0.45 -33.51 16 25 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 26 H 0.08 4.39 4.18 -2.91 -0.01 4.38 16 27 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.08 2.23 5.86 -2.39 -0.01 2.22 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 2.46 5.47 -2.39 -0.01 2.45 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 4.16 6.70 -2.91 -0.02 4.14 16 36 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.39 15.52 7.08 -92.71 -0.66 14.86 16 38 H 0.40 11.92 8.84 -92.71 -0.82 11.10 16 Total: -1.00 -63.13 287.88 -0.78 -63.91 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.46 Total: 37.81 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 2.68 Total: -47.55 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -4.68 Total: -103.44 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.68 Total: 49.27 kcal Total: -63.13 -0.78 -63.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706851331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.738 kcal (2) G-P(sol) polarization free energy of solvation -63.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds