Wall clock time and date at job start Mon Mar 30 2020 07:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36635 * 119.66451 * 2 1 4 4 C 1.39708 * 119.88124 * 179.73459 * 3 2 1 5 5 N 1.35786 * 133.59909 * 180.18477 * 4 3 2 6 6 C 1.30110 * 109.64491 * 180.31359 * 5 4 3 7 7 N 1.36039 * 110.10677 * 0.02562 * 6 5 4 8 8 C 1.46499 * 126.35238 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47633 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46761 * 59.97121 * 8 7 6 11 11 C 1.53000 * 109.46778 * 299.97826 * 8 7 6 12 12 C 1.50707 * 109.46779 * 184.99722 * 11 8 7 13 13 H 1.07997 * 120.00197 * 359.97438 * 12 11 8 14 14 C 1.37882 * 119.99669 * 179.97438 * 12 11 8 15 15 N 1.31508 * 120.00263 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47112 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46994 * 120.00022 * 16 14 12 19 19 H 1.48500 * 109.47287 * 240.00278 * 16 14 12 20 20 C 1.38062 * 107.30448 * 359.97438 * 7 6 5 21 21 C 1.38786 * 134.15045 * 180.02562 * 20 7 6 22 22 C 1.37903 * 119.68741 * 179.97438 * 21 20 7 23 23 C 1.50702 * 119.77212 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47152 * 269.72754 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72854 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72835 * 1 2 3 27 27 H 1.07997 * 120.05839 * 0.02562 * 3 2 1 28 28 H 1.08002 * 124.95021 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47022 * 179.97438 * 10 8 7 30 30 H 1.08990 * 109.47883 * 300.00350 * 10 8 7 31 31 H 1.08997 * 109.47185 * 60.00790 * 10 8 7 32 32 H 1.09001 * 109.47358 * 304.99426 * 11 8 7 33 33 H 1.08999 * 109.47883 * 64.99854 * 11 8 7 34 34 H 0.97006 * 120.00236 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.16045 * 359.97438 * 21 20 7 36 36 H 1.08997 * 109.47015 * 270.02486 * 23 22 21 37 37 H 1.09000 * 109.47249 * 30.02328 * 23 22 21 38 38 H 1.09000 * 109.47272 * 150.02585 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1873 0.0000 4 6 3.5803 1.1926 0.0056 5 7 4.5130 2.1794 0.0103 6 6 5.7040 1.6557 0.0079 7 7 5.6179 0.2981 0.0009 8 6 6.7404 -0.6433 -0.0031 9 1 6.3586 -1.6642 -0.0081 10 6 7.5942 -0.4241 1.2475 11 6 7.5951 -0.4123 -1.2509 12 6 8.6777 -1.4585 -1.3189 13 1 8.7493 -2.2124 -0.5490 14 6 9.5769 -1.4531 -2.3642 15 7 9.4901 -0.5348 -3.3015 16 14 10.9192 -2.7495 -2.4482 17 1 10.8011 -3.6606 -1.2815 18 1 10.7748 -3.5310 -3.7025 19 1 12.2485 -2.0877 -2.4274 20 6 4.2764 -0.0283 -0.0004 21 6 3.5725 -1.2244 -0.0060 22 6 2.1936 -1.2055 -0.0052 23 6 1.4274 -2.5031 -0.0118 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 -0.8876 -0.5181 26 1 -0.3633 0.8924 -0.5096 27 1 1.6388 2.1199 0.0004 28 1 6.6267 2.2170 0.0101 29 1 8.4291 -1.1248 1.2447 30 1 7.9760 0.5967 1.2525 31 1 6.9853 -0.5886 2.1364 32 1 6.9672 -0.4809 -2.1393 33 1 8.0490 0.5775 -1.2025 34 1 10.1229 -0.5308 -4.0368 35 1 4.1021 -2.1657 -0.0109 36 1 1.2425 -2.8107 -1.0410 37 1 2.0091 -3.2712 0.4980 38 1 0.4763 -2.3662 0.5029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709998259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:40 Heat of formation + Delta-G solvation = 46.657001 kcal Electronic energy + Delta-G solvation = -18779.237381 eV Core-core repulsion = 16007.354572 eV Total energy + Delta-G solvation = -2771.882810 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72751 -38.05992 -35.60184 -32.91356 -32.00576 -31.38055 -30.15705 -27.25883 -26.66563 -25.90736 -24.01041 -22.13621 -21.79132 -20.57886 -19.06942 -16.95198 -16.24081 -16.04265 -15.13522 -14.96852 -14.57969 -14.17958 -13.95116 -13.75525 -13.32786 -13.12613 -12.77839 -12.57259 -12.38068 -12.11332 -12.03778 -11.73183 -11.37277 -11.19114 -11.11097 -10.89756 -10.79148 -10.59896 -10.37652 -10.17427 -9.55099 -9.44707 -9.37028 -8.56268 -7.77859 -7.61439 -6.19714 -4.25045 1.29211 1.82320 3.17301 3.19968 3.24825 3.28996 3.31635 4.12982 4.30456 4.60494 4.91404 5.04061 5.15837 5.18094 5.29343 5.41313 5.44028 5.62887 5.66128 5.69636 5.72063 5.78555 5.82226 5.87771 5.89993 6.06616 6.14433 6.27048 6.42775 6.51121 6.60691 6.84324 6.88284 6.93878 7.19729 7.34516 7.42648 7.62607 7.79531 8.11382 8.32766 8.79579 9.40492 10.91373 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.004906 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.372018 B = 5705.365424 C = 6161.909946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.067 4.067 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.270 3.730 7 N -0.471 5.471 8 C 0.133 3.867 9 H 0.087 0.913 10 C -0.147 4.147 11 C 0.020 3.980 12 C -0.525 4.525 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.888 5.888 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.048 3.952 21 C -0.101 4.101 22 C -0.081 4.081 23 C -0.108 4.108 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.208 0.792 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 -1.124 7.602 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.106 4.106 3 C -0.087 4.087 4 C -0.078 4.078 5 N -0.234 5.234 6 C -0.015 4.015 7 N -0.158 5.158 8 C 0.032 3.968 9 H 0.105 0.895 10 C -0.205 4.205 11 C -0.018 4.018 12 C -0.564 4.564 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.526 5.526 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.083 4.083 23 C -0.165 4.165 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.224 0.776 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.874 -0.308 7.446 14.875 hybrid contribution 1.299 -1.424 -0.289 1.949 sum -11.575 -1.732 7.157 13.719 Atomic orbital electron populations 1.20726 0.91311 1.02444 1.01820 1.19094 0.95653 0.92030 1.03825 1.19713 0.90222 0.97638 1.01126 1.19063 0.93938 0.88681 1.06112 1.70455 0.98034 1.31106 1.23832 1.25178 0.98023 0.80992 0.97332 1.46076 1.05168 1.07755 1.56810 1.21916 0.84386 0.90908 0.99586 0.89498 1.22059 1.00114 1.03197 0.95160 1.19469 0.93879 0.98385 0.90071 1.21030 1.12970 1.13288 1.09100 0.92080 1.24997 0.97804 0.95875 0.95390 1.69969 1.36889 1.33765 1.12016 0.86476 0.81602 0.81457 0.78143 1.19597 1.20879 1.20822 1.18936 0.84436 0.96641 1.06311 1.19795 0.92934 0.95075 1.04410 1.19335 0.92298 0.94823 1.01843 1.20746 0.99618 0.94030 1.02115 0.91689 0.91573 0.91885 0.85992 0.77600 0.89543 0.92419 0.93979 0.95862 0.95609 0.92698 0.86216 0.91373 0.91819 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.16 36.01 0.33 -0.73 16 2 C -0.10 -1.43 5.84 -105.02 -0.61 -2.04 16 3 C -0.07 -1.07 9.67 -39.61 -0.38 -1.45 16 4 C 0.04 0.78 7.23 -84.70 -0.61 0.17 16 5 N -0.51 -10.02 11.27 -12.05 -0.14 -10.15 16 6 C 0.27 4.98 11.60 -89.78 -1.04 3.94 16 7 N -0.47 -8.96 2.67 -108.70 -0.29 -9.25 16 8 C 0.13 2.57 3.01 -67.93 -0.20 2.37 16 9 H 0.09 1.67 7.63 -51.93 -0.40 1.28 16 10 C -0.15 -2.50 9.06 37.16 0.34 -2.16 16 11 C 0.02 0.47 4.45 -27.88 -0.12 0.34 16 12 C -0.53 -13.56 8.41 -34.44 -0.29 -13.85 16 13 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 16 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.05 0.90 6.87 -83.99 -0.58 0.32 16 21 C -0.10 -1.67 9.53 -39.50 -0.38 -2.04 16 22 C -0.08 -1.14 5.88 -104.56 -0.62 -1.76 16 23 C -0.11 -1.13 9.16 36.01 0.33 -0.80 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.57 6.66 -51.93 -0.35 0.23 16 26 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 27 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.21 3.21 8.06 -52.49 -0.42 2.79 16 29 H 0.09 1.50 6.95 -51.93 -0.36 1.14 16 30 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 35 H 0.12 1.83 7.76 -52.49 -0.41 1.42 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.07 0.59 6.66 -51.93 -0.35 0.24 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -30.06 315.29 -9.47 -39.53 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.57 Total: 0.52 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.94 Total: -16.13 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.31 Total: -44.12 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.06 -9.47 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.185 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds