Wall clock time and date at job start Mon Mar 30 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36635 * 119.66451 * 2 1 4 4 C 1.39708 * 119.88124 * 179.73459 * 3 2 1 5 5 N 1.35786 * 133.59909 * 180.18477 * 4 3 2 6 6 C 1.30110 * 109.64491 * 180.31359 * 5 4 3 7 7 N 1.36039 * 110.10677 * 0.02562 * 6 5 4 8 8 C 1.46499 * 126.35238 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47633 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46761 * 59.97121 * 8 7 6 11 11 C 1.53000 * 109.46778 * 299.97826 * 8 7 6 12 12 C 1.50707 * 109.46779 * 184.99722 * 11 8 7 13 13 H 1.07997 * 120.00197 * 359.97438 * 12 11 8 14 14 C 1.37882 * 119.99669 * 179.97438 * 12 11 8 15 15 N 1.31508 * 120.00263 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47112 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46994 * 120.00022 * 16 14 12 19 19 H 1.48500 * 109.47287 * 240.00278 * 16 14 12 20 20 C 1.38062 * 107.30448 * 359.97438 * 7 6 5 21 21 C 1.38786 * 134.15045 * 180.02562 * 20 7 6 22 22 C 1.37903 * 119.68741 * 179.97438 * 21 20 7 23 23 C 1.50702 * 119.77212 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47152 * 269.72754 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72854 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72835 * 1 2 3 27 27 H 1.07997 * 120.05839 * 0.02562 * 3 2 1 28 28 H 1.08002 * 124.95021 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47022 * 179.97438 * 10 8 7 30 30 H 1.08990 * 109.47883 * 300.00350 * 10 8 7 31 31 H 1.08997 * 109.47185 * 60.00790 * 10 8 7 32 32 H 1.09001 * 109.47358 * 304.99426 * 11 8 7 33 33 H 1.08999 * 109.47883 * 64.99854 * 11 8 7 34 34 H 0.97006 * 120.00236 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.16045 * 359.97438 * 21 20 7 36 36 H 1.08997 * 109.47015 * 270.02486 * 23 22 21 37 37 H 1.09000 * 109.47249 * 30.02328 * 23 22 21 38 38 H 1.09000 * 109.47272 * 150.02585 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1873 0.0000 4 6 3.5803 1.1926 0.0056 5 7 4.5130 2.1794 0.0103 6 6 5.7040 1.6557 0.0079 7 7 5.6179 0.2981 0.0009 8 6 6.7404 -0.6433 -0.0031 9 1 6.3586 -1.6642 -0.0081 10 6 7.5942 -0.4241 1.2475 11 6 7.5951 -0.4123 -1.2509 12 6 8.6777 -1.4585 -1.3189 13 1 8.7493 -2.2124 -0.5490 14 6 9.5769 -1.4531 -2.3642 15 7 9.4901 -0.5348 -3.3015 16 14 10.9192 -2.7495 -2.4482 17 1 10.8011 -3.6606 -1.2815 18 1 10.7748 -3.5310 -3.7025 19 1 12.2485 -2.0877 -2.4274 20 6 4.2764 -0.0283 -0.0004 21 6 3.5725 -1.2244 -0.0060 22 6 2.1936 -1.2055 -0.0052 23 6 1.4274 -2.5031 -0.0118 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 -0.8876 -0.5181 26 1 -0.3633 0.8924 -0.5096 27 1 1.6388 2.1199 0.0004 28 1 6.6267 2.2170 0.0101 29 1 8.4291 -1.1248 1.2447 30 1 7.9760 0.5967 1.2525 31 1 6.9853 -0.5886 2.1364 32 1 6.9672 -0.4809 -2.1393 33 1 8.0490 0.5775 -1.2025 34 1 10.1229 -0.5308 -4.0368 35 1 4.1021 -2.1657 -0.0109 36 1 1.2425 -2.8107 -1.0410 37 1 2.0091 -3.2712 0.4980 38 1 0.4763 -2.3662 0.5029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709998259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:36 Heat of formation + Delta-G solvation = 32.242037 kcal Electronic energy + Delta-G solvation = -18779.862461 eV Core-core repulsion = 16007.354572 eV Total energy + Delta-G solvation = -2772.507889 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.08740 -39.25095 -37.19672 -34.76307 -33.28755 -32.52419 -31.58331 -29.02282 -27.73465 -27.04271 -25.79293 -23.44513 -23.29123 -21.83840 -20.51281 -18.76943 -17.71300 -17.43560 -16.70017 -16.28801 -16.23320 -15.37768 -15.31110 -14.83668 -14.72252 -14.49912 -14.27445 -13.86835 -13.52703 -13.38149 -13.14369 -12.94001 -12.88637 -12.82792 -12.39942 -12.32165 -12.22349 -12.07923 -11.87831 -11.72729 -11.36636 -11.02096 -10.92370 -10.63514 -9.04501 -8.91760 -8.25571 -6.37728 0.02643 0.58629 1.40475 1.41674 1.53763 1.77212 1.87066 2.39260 2.86253 3.09781 3.34116 3.66947 3.76932 3.99409 4.07370 4.18939 4.34236 4.36033 4.40228 4.52134 4.63230 4.78126 4.83187 4.89762 4.91840 4.93850 4.97112 5.14169 5.20429 5.25797 5.28443 5.32636 5.43149 5.59023 5.68944 5.70695 5.72959 6.02765 6.04062 6.31009 6.76622 6.92626 7.32624 8.86695 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.004906 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.372018 B = 5705.365424 C = 6161.909946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C -0.082 4.082 4 C 0.010 3.990 5 N -0.533 5.533 6 C 0.257 3.743 7 N -0.478 5.478 8 C 0.146 3.854 9 H 0.088 0.912 10 C -0.138 4.138 11 C 0.031 3.969 12 C -0.532 4.532 13 H 0.074 0.926 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.255 1.255 18 H -0.284 1.284 19 H -0.279 1.279 20 C 0.023 3.977 21 C -0.124 4.124 22 C -0.072 4.072 23 C -0.108 4.108 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.224 0.776 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.061 0.939 32 H -0.019 1.019 33 H 0.007 0.993 34 H 0.264 0.736 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 -2.836 8.789 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.102 4.102 4 C -0.108 4.108 5 N -0.253 5.253 6 C -0.029 4.029 7 N -0.166 5.166 8 C 0.045 3.955 9 H 0.106 0.894 10 C -0.196 4.196 11 C -0.007 4.007 12 C -0.570 4.570 13 H 0.093 0.907 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.790 3.210 17 H -0.179 1.179 18 H -0.210 1.210 19 H -0.205 1.205 20 C -0.087 4.087 21 C -0.145 4.145 22 C -0.074 4.074 23 C -0.164 4.164 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.240 0.760 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.080 0.920 32 H -0.001 1.001 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.377 -2.025 8.653 16.902 hybrid contribution 1.595 -0.887 -0.676 1.946 sum -12.782 -2.912 7.977 15.346 Atomic orbital electron populations 1.20827 0.87982 1.03899 1.03406 1.19614 0.97960 0.91068 1.01264 1.20056 0.89260 0.99304 1.01552 1.19522 0.95160 0.88598 1.07531 1.70403 0.98625 1.31844 1.24430 1.25537 0.98547 0.81122 0.97678 1.45992 1.05287 1.07742 1.57595 1.21605 0.84345 0.91129 0.98456 0.89429 1.21968 0.99751 1.03398 0.94480 1.19253 0.93568 0.97159 0.90729 1.21455 1.12936 1.13531 1.09126 0.90742 1.25932 1.00393 0.97971 0.95075 1.70113 1.38171 1.35969 1.12928 0.85380 0.78372 0.78794 0.78417 1.17896 1.20987 1.20524 1.19342 0.84285 0.97680 1.07403 1.20088 0.94163 0.94538 1.05725 1.19870 0.91666 0.96805 0.99070 1.20855 1.00258 0.92003 1.03292 0.89845 0.89708 0.90950 0.84663 0.76008 0.89762 0.92012 0.92003 1.00061 0.97438 0.92729 0.85697 0.90226 0.91064 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.16 71.24 0.65 -1.03 16 2 C -0.10 -2.46 5.84 -20.12 -0.12 -2.58 16 3 C -0.08 -2.55 9.67 22.25 0.22 -2.34 16 4 C 0.01 0.40 7.23 39.45 0.29 0.69 16 5 N -0.53 -21.40 11.27 -192.03 -2.16 -23.57 16 6 C 0.26 9.81 11.60 180.05 2.09 11.90 16 7 N -0.48 -18.71 2.67 -497.83 -1.33 -20.04 16 8 C 0.15 5.75 3.01 44.99 0.14 5.89 16 9 H 0.09 3.40 7.63 -2.39 -0.02 3.39 16 10 C -0.14 -4.59 9.06 71.98 0.65 -3.94 16 11 C 0.03 1.52 4.45 29.85 0.13 1.66 16 12 C -0.53 -27.73 8.41 25.60 0.22 -27.51 16 13 H 0.07 3.61 7.06 -2.91 -0.02 3.58 16 14 C 0.00 0.26 5.46 84.66 0.46 0.72 16 15 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 16 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 17 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 20 C 0.02 0.87 6.87 38.85 0.27 1.14 16 21 C -0.12 -4.03 9.53 22.32 0.21 -3.82 16 22 C -0.07 -1.89 5.88 -19.83 -0.12 -2.01 16 23 C -0.11 -1.87 9.16 71.24 0.65 -1.22 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.08 6.66 -2.39 -0.02 1.06 16 26 H 0.07 1.06 8.07 -2.38 -0.02 1.04 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.22 7.27 8.06 -2.91 -0.02 7.25 16 29 H 0.08 2.83 6.95 -2.39 -0.02 2.81 16 30 H 0.06 1.98 7.95 -2.39 -0.02 1.96 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 33 H 0.01 0.38 8.08 -2.39 -0.02 0.37 16 34 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 35 H 0.13 3.78 7.76 -2.91 -0.02 3.76 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.09 1.17 6.66 -2.39 -0.02 1.16 16 Total: -1.00 -66.63 315.29 5.59 -61.03 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.04 Total: 15.66 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 5.74 Total: -22.46 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -3.21 Total: -98.18 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -66.63 5.59 -61.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.275 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds