Wall clock time and date at job start Mon Mar 30 2020 07:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47342 * 2 1 4 4 C 1.53000 * 109.47104 * 239.99695 * 2 1 3 5 5 C 1.53002 * 109.47077 * 174.86769 * 4 2 1 6 6 C 1.47201 * 109.47195 * 185.02546 * 5 4 2 7 7 N 4.86390 * 126.39161 * 245.03561 * 2 1 3 8 8 N 1.46508 * 109.47111 * 120.00004 * 2 1 3 9 9 C 1.46502 * 119.99624 * 54.44204 * 8 2 1 10 10 C 1.50700 * 109.47241 * 263.27513 * 9 8 2 11 11 H 1.08000 * 120.00098 * 3.24189 * 10 9 8 12 12 C 1.37873 * 120.00041 * 183.23705 * 10 9 8 13 13 N 1.31523 * 119.99978 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00108 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47287 * 120.00089 * 14 12 10 17 17 H 1.48508 * 109.47309 * 240.00045 * 14 12 10 18 18 C 1.39668 * 119.99743 * 234.44602 * 8 2 1 19 19 C 1.38921 * 120.07223 * 175.16236 * 18 8 2 20 20 C 1.38103 * 119.92219 * 179.72464 * 19 18 8 21 21 C 1.38282 * 120.07632 * 0.27802 * 20 19 18 22 22 C 1.38289 * 120.15153 * 359.97438 * 21 20 19 23 23 C 1.38101 * 120.07265 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47037 * 174.70876 * 1 2 3 25 25 H 1.08997 * 109.46985 * 294.70347 * 1 2 3 26 26 H 1.09000 * 109.46821 * 54.70154 * 1 2 3 27 27 H 1.08999 * 109.47407 * 294.86896 * 4 2 1 28 28 H 1.09001 * 109.46743 * 54.87239 * 4 2 1 29 29 H 1.08998 * 109.47168 * 305.02487 * 5 4 2 30 30 H 1.09004 * 109.47167 * 65.02356 * 5 4 2 31 31 H 1.08996 * 109.47250 * 23.28170 * 9 8 2 32 32 H 1.09004 * 109.46605 * 143.28310 * 9 8 2 33 33 H 0.97000 * 119.99873 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.03685 * 359.97438 * 19 18 8 35 35 H 1.07998 * 119.95727 * 180.29925 * 20 19 18 36 36 H 1.08001 * 119.92374 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.95961 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.03602 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5646 -0.6105 -1.3154 6 6 4.0450 -1.1986 -2.5764 7 7 4.4158 -1.6525 -3.5495 8 7 2.0184 -0.6906 1.1962 9 6 1.5669 -2.0528 1.4912 10 6 0.4235 -2.0019 2.4715 11 1 0.0341 -1.0488 2.7980 12 6 -0.1257 -3.1719 2.9514 13 7 0.3486 -4.3324 2.5541 14 14 -1.5435 -3.1087 4.1660 15 1 -1.8885 -1.6927 4.4511 16 1 -2.7234 -3.7990 3.5858 17 1 -1.1455 -3.7843 5.4272 18 6 2.9143 -0.0504 2.0554 19 6 3.3005 -0.6630 3.2409 20 6 4.1909 -0.0296 4.0854 21 6 4.6935 1.2155 3.7549 22 6 4.3071 1.8305 2.5781 23 6 3.4170 1.2028 1.7290 24 1 -0.3633 -1.0233 -0.0948 25 1 -0.3633 0.4295 0.9336 26 1 -0.3633 0.5938 -0.8387 27 1 1.7537 -1.7721 -1.2044 28 1 1.6036 -0.2633 -2.1368 29 1 3.8549 0.4391 -1.2702 30 1 4.0047 -1.1457 -0.4739 31 1 1.2352 -2.5330 0.5706 32 1 2.3899 -2.6229 1.9223 33 1 -0.0380 -5.1556 2.8916 34 1 2.9080 -1.6353 3.4998 35 1 4.4953 -0.5075 5.0048 36 1 5.3900 1.7085 4.4169 37 1 4.7018 2.8028 2.3228 38 1 3.1160 1.6834 0.8099 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710013963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:48 Heat of formation + Delta-G solvation = 34.792230 kcal Electronic energy + Delta-G solvation = -19134.099417 eV Core-core repulsion = 16361.702112 eV Total energy + Delta-G solvation = -2772.397305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.47528 -38.34359 -37.39001 -35.10812 -33.81656 -31.62989 -31.41525 -30.12732 -28.03184 -25.49939 -24.93789 -23.20869 -22.16443 -20.27743 -18.69363 -18.47257 -18.15339 -16.76266 -16.51111 -15.85046 -15.80385 -15.32310 -15.01675 -14.67661 -14.37035 -14.15386 -14.11172 -13.74638 -13.53269 -13.38675 -13.10628 -13.07176 -12.91335 -12.66240 -12.49709 -12.15554 -12.06205 -11.94693 -11.78848 -11.64521 -11.46180 -11.03492 -10.55720 -10.36856 -9.52266 -8.26634 -7.68499 -6.23492 0.84580 1.05760 1.37481 1.41405 1.50984 1.78183 1.82678 2.39712 2.68317 3.08207 3.17342 3.31984 3.95884 4.15545 4.30697 4.38176 4.41783 4.51433 4.68306 4.72339 4.75198 4.86840 4.91479 5.03261 5.09213 5.13778 5.21457 5.26172 5.31402 5.44888 5.52143 5.62036 5.75645 5.84266 5.91793 6.04122 6.21606 6.36069 6.60915 6.66972 6.99093 7.13980 7.47365 8.92322 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.007991 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.865476 B = 3503.122452 C = 4777.588632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.150 3.850 3 H 0.117 0.883 4 C -0.122 4.122 5 C -0.016 4.016 6 C 0.239 3.761 7 N -0.502 5.502 8 N -0.613 5.613 9 C 0.275 3.725 10 C -0.516 4.516 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.929 5.929 14 Si 0.947 3.053 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.285 1.285 18 C 0.220 3.780 19 C -0.217 4.217 20 C -0.088 4.088 21 C -0.201 4.201 22 C -0.074 4.074 23 C -0.213 4.213 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.144 0.856 30 H 0.099 0.901 31 H 0.016 0.984 32 H 0.000 1.000 33 H 0.262 0.738 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 13.614 -2.604 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.046 3.954 3 H 0.134 0.866 4 C -0.162 4.162 5 C -0.056 4.056 6 C -0.077 4.077 7 N -0.181 5.181 8 N -0.320 5.320 9 C 0.153 3.847 10 C -0.555 4.555 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.570 5.570 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.211 1.211 18 C 0.116 3.884 19 C -0.240 4.240 20 C -0.107 4.107 21 C -0.221 4.221 22 C -0.092 4.092 23 C -0.235 4.235 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.162 0.838 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.339 12.639 -4.185 14.344 hybrid contribution -1.161 -0.992 1.387 2.063 sum 4.178 11.647 -2.799 12.686 Atomic orbital electron populations 1.22038 0.95466 1.01663 1.01651 1.21122 0.93981 0.97108 0.83153 0.86574 1.21952 0.93043 1.01899 0.99306 1.19436 0.96364 1.03425 0.86378 1.29758 0.91637 0.91877 0.94438 1.81202 1.11240 1.11490 1.14131 1.47041 1.45975 1.15275 1.23722 1.18575 0.92716 0.78975 0.94442 1.21809 1.16543 0.91821 1.25330 0.93118 1.25642 0.99467 0.95300 0.98297 1.70040 1.43354 0.97802 1.45810 0.85667 0.79773 0.78060 0.79124 1.19394 1.20729 1.21082 1.18099 0.88798 0.92162 0.89361 1.20845 1.04443 1.01956 0.96729 1.21014 0.95636 0.95721 0.98326 1.21031 1.05063 0.96304 0.99702 1.21146 0.95357 0.99536 0.93183 1.20908 1.04208 0.94855 1.03544 0.94355 0.93981 0.89615 0.93131 0.88015 0.83798 0.88287 0.96627 0.98222 0.92942 0.88991 0.86565 0.85133 0.83592 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 8.48 71.98 0.61 -3.70 16 2 C 0.15 3.90 2.53 44.99 0.11 4.01 16 3 H 0.12 2.25 5.38 -2.39 -0.01 2.24 16 4 C -0.12 -2.79 4.65 30.59 0.14 -2.65 16 5 C -0.02 -0.33 5.53 28.79 0.16 -0.17 16 6 C 0.24 6.12 15.43 89.44 1.38 7.50 16 7 N -0.50 -15.90 18.54 20.01 0.37 -15.53 16 8 N -0.61 -21.57 2.05 -677.64 -1.39 -22.96 16 9 C 0.27 12.74 3.99 85.63 0.34 13.08 16 10 C -0.52 -26.61 8.04 25.60 0.21 -26.41 16 11 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 12 C 0.01 0.61 5.46 84.65 0.46 1.07 16 13 N -0.93 -53.05 13.29 21.45 0.28 -52.76 16 14 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 18 C 0.22 7.50 6.50 38.22 0.25 7.75 16 19 C -0.22 -8.35 9.02 22.40 0.20 -8.14 16 20 C -0.09 -2.83 10.04 22.25 0.22 -2.60 16 21 C -0.20 -5.24 10.04 22.29 0.22 -5.02 16 22 C -0.07 -1.72 10.04 22.25 0.22 -1.49 16 23 C -0.21 -5.45 9.27 22.40 0.21 -5.24 16 24 H 0.04 1.33 7.45 -2.39 -0.02 1.32 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.49 6.80 -2.39 -0.02 1.47 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 2.36 7.90 -2.39 -0.02 2.34 16 31 H 0.02 0.77 6.46 -2.39 -0.02 0.76 16 32 H 0.00 -0.01 6.82 -2.38 -0.02 -0.03 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.09 4.26 6.12 -2.91 -0.02 4.24 16 35 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.15 2.74 5.81 -2.91 -0.02 2.72 16 Total: -1.00 -64.27 319.37 7.08 -57.19 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.05 Total: 10.89 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.74 Total: -22.01 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -0.73 Total: -91.25 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.27 7.08 -57.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710013963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.978 kcal (2) G-P(sol) polarization free energy of solvation -64.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds