Wall clock time and date at job start Mon Mar 30 2020 07:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 C 1.52995 * 109.47191 * 120.00347 * 2 1 3 5 5 C 1.53002 * 109.47294 * 185.70102 * 4 2 1 6 6 C 1.47202 * 109.46893 * 179.97438 * 5 4 2 7 7 N 4.86666 * 126.61337 * 117.90043 * 2 1 3 8 8 N 1.46497 * 109.47013 * 240.00129 * 2 1 3 9 9 C 1.46501 * 120.00474 * 304.95389 * 8 2 1 10 10 C 1.50700 * 109.47361 * 270.00335 * 9 8 2 11 11 H 1.07993 * 119.99707 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99730 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00521 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99336 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46920 * 90.00468 * 14 12 10 16 16 H 1.48499 * 109.46557 * 209.99695 * 14 12 10 17 17 H 1.48493 * 109.47276 * 330.00062 * 14 12 10 18 18 C 1.39678 * 120.00295 * 124.95547 * 8 2 1 19 19 C 1.38912 * 120.08038 * 174.33660 * 18 8 2 20 20 C 1.38105 * 119.92747 * 180.02562 * 19 18 8 21 21 C 1.38281 * 120.07096 * 0.02562 * 20 19 18 22 22 C 1.38281 * 120.15609 * 0.27432 * 21 20 19 23 23 C 1.38108 * 120.07418 * 359.44808 * 22 21 20 24 24 H 1.09006 * 109.47209 * 65.36789 * 1 2 3 25 25 H 1.08994 * 109.47440 * 185.36250 * 1 2 3 26 26 H 1.08995 * 109.47158 * 305.36703 * 1 2 3 27 27 H 1.08999 * 109.46996 * 305.70004 * 4 2 1 28 28 H 1.09001 * 109.47355 * 65.69882 * 4 2 1 29 29 H 1.08994 * 109.46743 * 299.99500 * 5 4 2 30 30 H 1.08994 * 109.46853 * 59.99957 * 5 4 2 31 31 H 1.09010 * 109.46728 * 30.00081 * 9 8 2 32 32 H 1.08999 * 109.47544 * 149.99272 * 9 8 2 33 33 H 0.96997 * 119.99947 * 179.97438 * 13 12 10 34 34 H 1.07997 * 120.03142 * 0.02562 * 19 18 8 35 35 H 1.07990 * 119.96101 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.92387 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.97103 * 179.69918 * 22 21 20 38 38 H 1.07997 * 120.04553 * 180.27650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5633 -0.5984 1.3229 6 6 4.0538 -1.2919 2.5251 7 7 4.4325 -1.8279 3.4523 8 7 2.0183 -0.6906 -1.1962 9 6 1.5772 -2.0576 -1.4843 10 6 2.5238 -3.0372 -0.8399 11 1 3.3696 -2.6776 -0.2728 12 6 2.3100 -4.3927 -0.9743 13 7 1.2797 -4.8307 -1.6644 14 14 3.4838 -5.6070 -0.1761 15 1 3.0132 -5.9207 1.1971 16 1 3.5286 -6.8541 -0.9809 17 1 4.8425 -5.0115 -0.1098 18 6 2.9045 -0.0457 -2.0621 19 6 3.4601 -0.7369 -3.1313 20 6 4.3364 -0.0964 -3.9852 21 6 4.6613 1.2314 -3.7764 22 6 4.1149 1.9208 -2.7095 23 6 3.2335 1.2880 -1.8550 24 1 -0.3634 0.4283 -0.9342 25 1 -0.3634 -1.0231 0.0960 26 1 -0.3633 0.5948 0.8380 27 1 1.5957 -0.2698 2.1362 28 1 1.7624 -1.7742 1.1996 29 1 4.0075 -1.0499 0.4359 30 1 3.8408 0.4544 1.3725 31 1 0.5734 -2.2069 -1.0864 32 1 1.5679 -2.2168 -2.5625 33 1 1.1295 -5.7843 -1.7592 34 1 3.2070 -1.7741 -3.2946 35 1 4.7683 -0.6331 -4.8168 36 1 5.3472 1.7298 -4.4454 37 1 4.3745 2.9564 -2.5464 38 1 2.8036 1.8281 -1.0245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710013970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:59 Heat of formation + Delta-G solvation = 36.553255 kcal Electronic energy + Delta-G solvation = -19376.809594 eV Core-core repulsion = 16604.488653 eV Total energy + Delta-G solvation = -2772.320941 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.48204 -38.35840 -37.35985 -34.99178 -33.86031 -31.71366 -31.36425 -30.21632 -27.90355 -25.67606 -24.78882 -23.19481 -22.14845 -20.26355 -18.67282 -18.60300 -18.13302 -16.75549 -16.48340 -15.91920 -15.68463 -15.31119 -14.96466 -14.75382 -14.34874 -14.19964 -14.12380 -13.72376 -13.57923 -13.45069 -13.12849 -13.06361 -12.88835 -12.62052 -12.51961 -12.17658 -12.04289 -11.95388 -11.76461 -11.60800 -11.41243 -10.99231 -10.55277 -10.35904 -9.52727 -8.28381 -7.68473 -6.22735 0.84255 1.05507 1.30410 1.35579 1.41332 1.79380 1.83827 2.34246 2.69417 3.13860 3.16199 3.31890 4.00317 4.21389 4.32106 4.40489 4.45607 4.52041 4.70317 4.71865 4.76548 4.87313 4.91294 5.05336 5.10126 5.14384 5.24638 5.29645 5.37050 5.47984 5.52299 5.60202 5.77667 5.83988 5.92109 6.03859 6.21147 6.36235 6.62080 6.67694 7.00218 7.14077 7.47154 8.90646 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.008694 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.612410 B = 3219.777041 C = 3907.614686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 H 0.118 0.882 4 C -0.124 4.124 5 C -0.020 4.020 6 C 0.239 3.761 7 N -0.507 5.507 8 N -0.613 5.613 9 C 0.270 3.730 10 C -0.512 4.512 11 H 0.065 0.935 12 C 0.019 3.981 13 N -0.926 5.926 14 Si 0.928 3.072 15 H -0.286 1.286 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.220 3.780 19 C -0.220 4.220 20 C -0.086 4.086 21 C -0.201 4.201 22 C -0.073 4.073 23 C -0.213 4.213 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.144 0.856 31 H 0.017 0.983 32 H 0.001 0.999 33 H 0.261 0.739 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 15.743 -0.102 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.136 0.864 4 C -0.164 4.164 5 C -0.060 4.060 6 C -0.077 4.077 7 N -0.186 5.186 8 N -0.320 5.320 9 C 0.149 3.851 10 C -0.551 4.551 11 H 0.083 0.917 12 C -0.180 4.180 13 N -0.567 5.567 14 Si 0.756 3.244 15 H -0.212 1.212 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.116 3.884 19 C -0.242 4.242 20 C -0.105 4.105 21 C -0.221 4.221 22 C -0.092 4.092 23 C -0.235 4.235 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.161 0.839 31 H 0.035 0.965 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.031 14.664 1.367 14.866 hybrid contribution 0.281 -1.758 -0.227 1.794 sum 2.311 12.906 1.140 13.161 Atomic orbital electron populations 1.22101 0.95073 1.01672 1.02637 1.21107 0.94133 0.96882 0.83123 0.86450 1.21970 0.92500 1.02714 0.99207 1.19536 0.97161 1.01226 0.88063 1.29887 0.91535 0.92140 0.94122 1.81150 1.11487 1.11545 1.14410 1.47032 1.47014 1.14371 1.23567 1.18646 0.93973 0.78043 0.94474 1.21936 1.11071 0.90814 1.31279 0.91654 1.25477 0.96397 0.99971 0.96146 1.70003 1.29783 1.14612 1.42295 0.86010 0.80281 0.79753 0.78339 1.21245 1.20976 1.19852 1.18116 0.88960 0.91922 0.89445 1.20838 1.04062 1.00001 0.99335 1.21014 0.96077 0.95518 0.97912 1.21032 1.05264 0.94536 1.01317 1.21146 0.94645 1.00056 0.93304 1.20908 1.05407 0.92606 1.04625 0.92787 0.94426 0.89068 0.88512 0.92502 0.88491 0.83858 0.96496 0.98088 0.92995 0.88899 0.86458 0.85135 0.83663 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 8.93 71.98 0.64 -3.29 16 2 C 0.15 3.90 2.58 44.99 0.12 4.02 16 3 H 0.12 2.22 5.31 -2.39 -0.01 2.20 16 4 C -0.12 -3.30 4.22 30.59 0.13 -3.17 16 5 C -0.02 -0.52 5.25 28.79 0.15 -0.37 16 6 C 0.24 7.66 15.43 89.44 1.38 9.04 16 7 N -0.51 -19.14 18.54 20.01 0.37 -18.77 16 8 N -0.61 -21.28 2.01 -677.65 -1.36 -22.64 16 9 C 0.27 12.38 4.34 85.63 0.37 12.75 16 10 C -0.51 -25.61 7.63 25.60 0.20 -25.41 16 11 H 0.07 3.20 5.53 -2.91 -0.02 3.18 16 12 C 0.02 1.01 5.46 84.66 0.46 1.47 16 13 N -0.93 -52.76 13.29 21.45 0.28 -52.47 16 14 Si 0.93 44.34 29.54 68.60 2.03 46.37 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 18 C 0.22 7.36 6.54 38.22 0.25 7.61 16 19 C -0.22 -8.23 9.16 22.40 0.21 -8.03 16 20 C -0.09 -2.70 10.04 22.25 0.22 -2.48 16 21 C -0.20 -5.16 10.04 22.29 0.22 -4.93 16 22 C -0.07 -1.68 10.04 22.25 0.22 -1.46 16 23 C -0.21 -5.42 9.31 22.40 0.21 -5.21 16 24 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.04 1.16 6.78 -2.39 -0.02 1.14 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 2.03 6.53 -2.39 -0.02 2.02 16 29 H 0.10 3.06 6.06 -2.39 -0.01 3.04 16 30 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.02 0.84 6.30 -2.38 -0.02 0.82 16 32 H 0.00 0.06 6.45 -2.39 -0.02 0.04 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.09 4.16 6.26 -2.91 -0.02 4.14 16 35 H 0.12 3.32 8.06 -2.92 -0.02 3.29 16 36 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.15 2.76 5.74 -2.91 -0.02 2.74 16 Total: -1.00 -63.74 313.69 7.17 -56.57 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.06 Total: 10.40 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 4.78 Total: -19.46 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -0.70 Total: -93.89 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.74 7.17 -56.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710013970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.125 kcal (2) G-P(sol) polarization free energy of solvation -63.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds