Wall clock time and date at job start Mon Mar 30 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48506 * 109.46701 * 269.99679 * 3 2 1 5 5 H 1.48493 * 109.47134 * 29.99706 * 3 2 1 6 6 H 1.48495 * 109.46982 * 149.99999 * 3 2 1 7 7 C 1.39879 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00141 * 190.32687 * 7 2 1 9 9 C 1.41025 * 120.00187 * 10.05322 * 7 2 1 10 10 C 1.40661 * 120.26751 * 29.81098 * 9 7 2 11 11 C 1.38008 * 119.77307 * 179.97438 * 10 9 7 12 12 N 1.39846 * 119.84402 * 179.97438 * 11 10 9 13 13 C 1.50041 * 111.00476 * 155.53142 * 12 11 10 14 14 C 1.51710 * 101.84550 * 211.54409 * 13 12 11 15 15 H 1.09003 * 113.03187 * 290.61345 * 14 13 12 16 16 C 1.49768 * 129.78360 * 131.98661 * 14 13 12 17 17 C 1.56702 * 81.08417 * 227.79353 * 16 14 13 18 18 C 1.49462 * 80.75904 * 45.95942 * 17 16 14 19 19 H 1.09003 * 113.33482 * 65.43323 * 18 17 16 20 20 C 1.49656 * 110.99773 * 37.36473 * 12 11 10 21 21 C 1.39609 * 120.31786 * 0.02562 * 11 10 9 22 22 C 1.38050 * 120.55058 * 359.97438 * 21 11 10 23 23 C 1.38749 * 120.21911 * 359.69476 * 22 21 11 24 24 N 1.38867 * 120.16115 * 180.29808 * 23 22 21 25 25 H 0.96997 * 119.99996 * 5.00264 * 1 2 3 26 26 H 1.07998 * 120.11627 * 0.02562 * 10 9 7 27 27 H 1.09009 * 110.95605 * 329.68246 * 13 12 11 28 28 H 1.09003 * 110.95568 * 93.40312 * 13 12 11 29 29 H 1.09002 * 114.59869 * 114.74491 * 16 14 13 30 30 H 1.09000 * 114.63714 * 340.83422 * 16 14 13 31 31 H 1.09004 * 114.64356 * 292.99861 * 17 16 14 32 32 H 1.08995 * 114.69303 * 158.92911 * 17 16 14 33 33 H 1.09010 * 110.40463 * 231.23538 * 20 12 11 34 34 H 1.09002 * 110.40540 * 353.53909 * 20 12 11 35 35 H 1.08001 * 119.71919 * 179.97438 * 21 11 10 36 36 H 1.08000 * 119.89438 * 179.97438 * 22 21 11 37 37 H 0.96995 * 119.99454 * 175.23272 * 24 23 22 38 38 H 0.96993 * 120.00192 * 355.23969 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0464 -1.4002 5 1 1.4404 2.6527 0.6999 6 1 3.5405 1.4403 0.7000 7 6 2.0085 -1.2114 0.0005 8 1 3.0754 -1.2189 0.1682 9 6 1.3196 -2.4234 -0.2121 10 6 0.1587 -2.4493 -1.0060 11 6 -0.5071 -3.6412 -1.2078 12 7 -1.6617 -3.6685 -1.9963 13 6 -1.8871 -5.0354 -2.5727 14 6 -2.5589 -4.7095 -3.8934 15 1 -3.5662 -4.3110 -3.7726 16 6 -2.2646 -5.2207 -5.2700 17 6 -2.3438 -3.6890 -5.5914 18 6 -1.4879 -3.6335 -4.3674 19 1 -0.5129 -4.1021 -4.5007 20 6 -1.5396 -2.7337 -3.1586 21 6 -0.0341 -4.8197 -0.6276 22 6 1.1039 -4.8095 0.1539 23 6 1.7948 -3.6251 0.3660 24 7 2.9428 -3.6174 1.1473 25 1 -0.4850 0.8368 -0.0733 26 1 -0.2099 -1.5397 -1.4567 27 1 -0.9406 -5.5516 -2.7337 28 1 -2.5466 -5.6236 -1.9346 29 1 -3.0616 -5.8187 -5.7119 30 1 -1.2737 -5.6586 -5.3900 31 1 -3.3347 -3.2505 -5.4734 32 1 -1.8413 -3.3902 -6.5113 33 1 -2.4078 -2.0766 -3.2107 34 1 -0.6242 -2.1471 -3.0799 35 1 -0.5630 -5.7469 -0.7915 36 1 1.4601 -5.7273 0.5979 37 1 3.4623 -2.8033 1.2377 38 1 3.2252 -4.4260 1.6024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711222096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:34 Heat of formation + Delta-G solvation = 114.751462 kcal Electronic energy + Delta-G solvation = -19348.539890 eV Core-core repulsion = 16579.609878 eV Total energy + Delta-G solvation = -2768.930012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15350 -37.93864 -35.41451 -33.48823 -32.03073 -29.75736 -28.50581 -27.74921 -25.33071 -24.21957 -23.38152 -21.12838 -20.46875 -20.25632 -19.09448 -17.15724 -16.03102 -15.60483 -14.92782 -14.81644 -14.62291 -14.34995 -14.06739 -13.21936 -12.88641 -12.56708 -12.32104 -11.97097 -11.76018 -11.70038 -11.44206 -11.27675 -11.20497 -11.00056 -10.90871 -10.77572 -10.48229 -10.33291 -9.89824 -9.40390 -9.33834 -9.09589 -8.74564 -7.98149 -7.24951 -6.58693 -5.86462 -4.11613 2.86399 3.13791 3.15772 3.18055 3.26065 3.88933 4.03902 4.49437 4.56668 4.81222 4.88950 5.09488 5.32367 5.58044 5.62162 5.70947 5.73236 5.83953 5.91959 5.97895 6.08716 6.15311 6.22412 6.28436 6.48196 6.52330 6.53539 6.66806 6.84000 7.08548 7.22418 7.28328 7.56986 7.71146 7.77549 8.03328 8.28565 8.37035 8.65858 8.88106 8.92310 9.16079 9.23171 10.40669 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.006783 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.937739 B = 4126.860572 C = 5120.100862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.069 0.931 9 C 0.077 3.923 10 C -0.154 4.154 11 C 0.062 3.938 12 N -0.462 5.462 13 C 0.059 3.941 14 C -0.164 4.164 15 H 0.102 0.898 16 C -0.110 4.110 17 C -0.106 4.106 18 C -0.173 4.173 19 H 0.092 0.908 20 C 0.056 3.944 21 C -0.217 4.217 22 C -0.169 4.169 23 C 0.107 3.893 24 N -0.886 5.886 25 H 0.276 0.724 26 H 0.128 0.872 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.390 0.610 38 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -5.362 -7.432 9.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.088 0.912 9 C 0.072 3.928 10 C -0.176 4.176 11 C -0.036 4.036 12 N -0.178 5.178 13 C -0.067 4.067 14 C -0.183 4.183 15 H 0.120 0.880 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.192 4.192 19 H 0.110 0.890 20 C -0.070 4.070 21 C -0.240 4.240 22 C -0.193 4.193 23 C 0.005 3.995 24 N -0.428 5.428 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.218 0.782 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.928 -5.009 -7.047 9.128 hybrid contribution 1.217 0.575 0.055 1.347 sum -1.711 -4.434 -6.991 8.454 Atomic orbital electron populations 1.69836 1.07009 1.28712 1.37686 1.25722 0.94755 1.00563 0.93017 0.86404 0.80255 0.81556 0.78965 1.19680 1.20548 1.19004 1.19096 0.94985 0.90557 1.45025 0.91249 1.17100 0.93333 0.90522 0.91846 1.20866 0.98536 0.95407 1.02832 1.18740 0.90290 0.94638 0.99897 1.62947 1.34235 1.04473 1.16180 1.22521 0.99156 0.91463 0.93566 1.23689 0.99395 1.01624 0.93564 0.87998 1.22740 1.01634 0.95645 0.94749 1.22648 0.99577 0.95824 0.96354 1.23781 0.97911 1.00479 0.97037 0.88988 1.22347 1.02651 0.94747 0.87262 1.19980 1.00132 0.95295 1.08561 1.19818 0.98867 0.94914 1.05680 1.18006 0.90460 0.94245 0.96739 1.41870 1.29228 1.13977 1.57695 0.91312 0.85468 0.92469 0.90979 0.91800 0.89425 0.89231 0.91807 0.91080 0.90375 0.89168 0.89525 0.78155 0.79928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.37 10.87 55.54 0.60 -20.77 16 2 C 0.07 1.89 5.26 -17.33 -0.09 1.80 16 3 Si 0.90 19.06 29.58 -169.99 -5.03 14.03 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.47 -12.19 8.46 -37.91 -0.32 -12.51 16 8 H 0.07 1.73 6.73 -52.48 -0.35 1.37 16 9 C 0.08 2.05 5.55 -106.66 -0.59 1.46 16 10 C -0.15 -4.01 7.25 -38.75 -0.28 -4.30 16 11 C 0.06 1.47 5.79 -83.77 -0.49 0.99 16 12 N -0.46 -9.58 5.47 -168.24 -0.92 -10.50 16 13 C 0.06 1.01 5.04 -2.72 -0.01 1.00 16 14 C -0.16 -2.31 4.43 -103.13 -0.46 -2.77 16 15 H 0.10 1.43 7.60 -51.93 -0.39 1.03 16 16 C -0.11 -1.26 8.07 -41.56 -0.34 -1.60 16 17 C -0.11 -1.25 8.10 -40.10 -0.32 -1.58 16 18 C -0.17 -2.61 4.31 -105.34 -0.45 -3.07 16 19 H 0.09 1.47 7.30 -51.93 -0.38 1.09 16 20 C 0.06 1.04 6.15 -3.40 -0.02 1.02 16 21 C -0.22 -4.98 8.70 -39.14 -0.34 -5.32 16 22 C -0.17 -3.86 9.87 -39.46 -0.39 -4.25 16 23 C 0.11 2.58 6.79 -83.22 -0.56 2.02 16 24 N -0.89 -18.00 8.97 32.75 0.29 -17.70 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 26 H 0.13 3.45 4.81 -52.49 -0.25 3.20 16 27 H 0.06 1.01 6.80 -51.92 -0.35 0.66 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.00 7.49 -51.93 -0.39 0.61 16 31 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 34 H 0.08 1.64 5.67 -51.93 -0.29 1.34 16 35 H 0.09 1.87 6.51 -52.49 -0.34 1.53 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.39 7.77 7.09 -40.82 -0.29 7.48 16 38 H 0.38 6.43 8.84 -40.82 -0.36 6.07 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -28.28 295.36 -10.32 -38.61 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -5.05 Total: 18.99 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -4.67 Total: -27.11 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.02 Total: -48.97 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.28 -10.32 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711222096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.357 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds