Wall clock time and date at job start Mon Mar 30 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48506 * 109.46701 * 269.99679 * 3 2 1 5 5 H 1.48493 * 109.47134 * 29.99706 * 3 2 1 6 6 H 1.48495 * 109.46982 * 149.99999 * 3 2 1 7 7 C 1.39879 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00141 * 190.32687 * 7 2 1 9 9 C 1.41025 * 120.00187 * 10.05322 * 7 2 1 10 10 C 1.40661 * 120.26751 * 29.81098 * 9 7 2 11 11 C 1.38008 * 119.77307 * 179.97438 * 10 9 7 12 12 N 1.39846 * 119.84402 * 179.97438 * 11 10 9 13 13 C 1.50041 * 111.00476 * 155.53142 * 12 11 10 14 14 C 1.51710 * 101.84550 * 211.54409 * 13 12 11 15 15 H 1.09003 * 113.03187 * 290.61345 * 14 13 12 16 16 C 1.49768 * 129.78360 * 131.98661 * 14 13 12 17 17 C 1.56702 * 81.08417 * 227.79353 * 16 14 13 18 18 C 1.49462 * 80.75904 * 45.95942 * 17 16 14 19 19 H 1.09003 * 113.33482 * 65.43323 * 18 17 16 20 20 C 1.49656 * 110.99773 * 37.36473 * 12 11 10 21 21 C 1.39609 * 120.31786 * 0.02562 * 11 10 9 22 22 C 1.38050 * 120.55058 * 359.97438 * 21 11 10 23 23 C 1.38749 * 120.21911 * 359.69476 * 22 21 11 24 24 N 1.38867 * 120.16115 * 180.29808 * 23 22 21 25 25 H 0.96997 * 119.99996 * 5.00264 * 1 2 3 26 26 H 1.07998 * 120.11627 * 0.02562 * 10 9 7 27 27 H 1.09009 * 110.95605 * 329.68246 * 13 12 11 28 28 H 1.09003 * 110.95568 * 93.40312 * 13 12 11 29 29 H 1.09002 * 114.59869 * 114.74491 * 16 14 13 30 30 H 1.09000 * 114.63714 * 340.83422 * 16 14 13 31 31 H 1.09004 * 114.64356 * 292.99861 * 17 16 14 32 32 H 1.08995 * 114.69303 * 158.92911 * 17 16 14 33 33 H 1.09010 * 110.40463 * 231.23538 * 20 12 11 34 34 H 1.09002 * 110.40540 * 353.53909 * 20 12 11 35 35 H 1.08001 * 119.71919 * 179.97438 * 21 11 10 36 36 H 1.08000 * 119.89438 * 179.97438 * 22 21 11 37 37 H 0.96995 * 119.99454 * 175.23272 * 24 23 22 38 38 H 0.96993 * 120.00192 * 355.23969 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0464 -1.4002 5 1 1.4404 2.6527 0.6999 6 1 3.5405 1.4403 0.7000 7 6 2.0085 -1.2114 0.0005 8 1 3.0754 -1.2189 0.1682 9 6 1.3196 -2.4234 -0.2121 10 6 0.1587 -2.4493 -1.0060 11 6 -0.5071 -3.6412 -1.2078 12 7 -1.6617 -3.6685 -1.9963 13 6 -1.8871 -5.0354 -2.5727 14 6 -2.5589 -4.7095 -3.8934 15 1 -3.5662 -4.3110 -3.7726 16 6 -2.2646 -5.2207 -5.2700 17 6 -2.3438 -3.6890 -5.5914 18 6 -1.4879 -3.6335 -4.3674 19 1 -0.5129 -4.1021 -4.5007 20 6 -1.5396 -2.7337 -3.1586 21 6 -0.0341 -4.8197 -0.6276 22 6 1.1039 -4.8095 0.1539 23 6 1.7948 -3.6251 0.3660 24 7 2.9428 -3.6174 1.1473 25 1 -0.4850 0.8368 -0.0733 26 1 -0.2099 -1.5397 -1.4567 27 1 -0.9406 -5.5516 -2.7337 28 1 -2.5466 -5.6236 -1.9346 29 1 -3.0616 -5.8187 -5.7119 30 1 -1.2737 -5.6586 -5.3900 31 1 -3.3347 -3.2505 -5.4734 32 1 -1.8413 -3.3902 -6.5113 33 1 -2.4078 -2.0766 -3.2107 34 1 -0.6242 -2.1471 -3.0799 35 1 -0.5630 -5.7469 -0.7915 36 1 1.4601 -5.7273 0.5979 37 1 3.4623 -2.8033 1.2377 38 1 3.2252 -4.4260 1.6024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711222096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:33 Heat of formation + Delta-G solvation = 97.636336 kcal Electronic energy + Delta-G solvation = -19349.282058 eV Core-core repulsion = 16579.609878 eV Total energy + Delta-G solvation = -2769.672180 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41400 -39.67344 -36.97570 -35.37669 -33.67643 -31.58245 -30.00864 -29.31188 -27.11250 -25.82308 -24.58570 -22.77426 -21.95519 -21.51027 -20.72363 -19.00529 -17.77008 -17.34519 -16.62050 -16.41657 -16.13925 -15.65489 -15.31666 -14.86688 -14.54824 -14.18971 -13.89852 -13.56109 -13.38791 -13.24024 -12.87522 -12.79426 -12.63475 -12.61666 -12.23232 -12.08907 -12.03975 -11.82987 -11.52020 -11.19464 -11.06460 -10.98216 -9.91754 -9.62753 -9.17535 -8.48652 -7.64961 -6.07445 1.04852 1.31468 1.39468 1.50904 1.53148 2.26150 2.69311 2.83056 3.16002 3.56483 3.65793 3.80459 3.83896 3.92350 4.27532 4.42590 4.48094 4.53203 4.65444 4.72731 4.77413 4.87044 4.96122 4.98586 5.09084 5.14005 5.17954 5.21148 5.32911 5.37238 5.46081 5.48082 5.75396 5.89409 5.98332 6.15930 6.46370 6.48119 6.86382 6.97726 7.04702 7.34006 7.56956 8.52418 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.006783 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.937739 B = 4126.860572 C = 5120.100862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.030 3.970 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.490 4.490 8 H 0.074 0.926 9 C 0.040 3.960 10 C -0.176 4.176 11 C 0.056 3.944 12 N -0.481 5.481 13 C 0.057 3.943 14 C -0.150 4.150 15 H 0.108 0.892 16 C -0.095 4.095 17 C -0.095 4.095 18 C -0.180 4.180 19 H 0.081 0.919 20 C 0.057 3.943 21 C -0.219 4.219 22 C -0.175 4.175 23 C 0.096 3.904 24 N -0.875 5.875 25 H 0.278 0.722 26 H 0.106 0.894 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.392 0.608 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -6.507 -8.507 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.182 4.182 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.522 4.522 8 H 0.092 0.908 9 C 0.034 3.966 10 C -0.198 4.198 11 C -0.042 4.042 12 N -0.197 5.197 13 C -0.068 4.068 14 C -0.169 4.169 15 H 0.126 0.874 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.200 4.200 19 H 0.099 0.901 20 C -0.069 4.069 21 C -0.241 4.241 22 C -0.199 4.199 23 C -0.007 4.007 24 N -0.418 5.418 25 H 0.089 0.911 26 H 0.124 0.876 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.220 0.780 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.175 -6.187 -8.117 10.688 hybrid contribution 1.241 0.833 0.402 1.548 sum -1.934 -5.354 -7.715 9.588 Atomic orbital electron populations 1.69943 1.08592 1.29634 1.38929 1.26570 0.95470 1.03895 0.92230 0.85293 0.79010 0.76882 0.79029 1.19258 1.20212 1.18043 1.19354 0.95302 0.91352 1.46208 0.90785 1.17499 0.94212 0.91877 0.92965 1.20829 0.99514 0.95663 1.03838 1.18924 0.90828 0.94221 1.00261 1.62875 1.32677 1.06840 1.17278 1.22553 0.99375 0.89509 0.95405 1.23767 0.98848 1.01088 0.93184 0.87392 1.22707 1.02733 0.95698 0.92082 1.22705 0.99354 0.96141 0.95032 1.23785 0.98416 0.99631 0.98129 0.90097 1.22221 1.00957 0.94877 0.88848 1.20321 1.00174 0.95793 1.07803 1.20173 0.98667 0.95625 1.05424 1.18175 0.91521 0.93994 0.97019 1.41746 1.28041 1.14939 1.57029 0.91128 0.87594 0.93036 0.90300 0.89035 0.89243 0.88011 0.90273 0.90942 0.93765 0.86891 0.86605 0.77974 0.77930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.69 10.87 21.82 0.24 -46.46 16 2 C 0.03 1.55 5.26 85.23 0.45 2.00 16 3 Si 0.98 39.95 29.58 68.60 2.03 41.98 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.49 -26.54 8.46 23.35 0.20 -26.34 16 8 H 0.07 3.77 6.73 -2.91 -0.02 3.75 16 9 C 0.04 2.18 5.55 -21.18 -0.12 2.06 16 10 C -0.18 -9.62 7.25 22.81 0.17 -9.46 16 11 C 0.06 2.73 5.79 38.14 0.22 2.95 16 12 N -0.48 -20.22 5.47 -686.19 -3.75 -23.98 16 13 C 0.06 1.89 5.04 85.26 0.43 2.32 16 14 C -0.15 -3.90 4.43 -18.90 -0.08 -3.98 16 15 H 0.11 2.73 7.60 -2.39 -0.02 2.71 16 16 C -0.09 -1.83 8.07 20.99 0.17 -1.66 16 17 C -0.09 -1.96 8.10 21.94 0.18 -1.78 16 18 C -0.18 -5.30 4.31 -20.33 -0.09 -5.39 16 19 H 0.08 2.56 7.30 -2.39 -0.02 2.55 16 20 C 0.06 2.19 6.15 85.04 0.52 2.71 16 21 C -0.22 -9.95 8.70 22.56 0.20 -9.75 16 22 C -0.17 -7.87 9.87 22.35 0.22 -7.65 16 23 C 0.10 4.65 6.79 38.97 0.26 4.91 16 24 N -0.87 -35.06 8.97 -50.30 -0.45 -35.51 16 25 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 26 H 0.11 6.16 4.81 -2.91 -0.01 6.15 16 27 H 0.05 1.76 6.80 -2.38 -0.02 1.75 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.75 7.49 -2.39 -0.02 1.73 16 31 H 0.10 1.90 7.61 -2.38 -0.02 1.89 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.04 1.99 5.67 -2.39 -0.01 1.98 16 35 H 0.11 4.53 6.51 -2.91 -0.02 4.51 16 36 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.39 15.53 7.09 -92.71 -0.66 14.87 16 38 H 0.39 12.87 8.84 -92.71 -0.82 12.05 16 Total: -1.00 -63.34 295.36 0.40 -62.94 By element: Atomic # 1 Polarization: 50.46 SS G_CDS: -0.38 Total: 50.08 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 2.72 Total: -49.05 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.97 Total: -105.94 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -63.34 0.40 -62.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711222096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.576 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds