Wall clock time and date at job start Mon Mar 30 2020 07:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86798 * 120.00480 * 2 1 4 4 H 1.48502 * 109.47098 * 269.99874 * 3 2 1 5 5 H 1.48504 * 109.46840 * 29.99620 * 3 2 1 6 6 H 1.48503 * 109.47400 * 149.99378 * 3 2 1 7 7 C 1.39892 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00063 * 196.32040 * 7 2 1 9 9 C 1.41029 * 120.00089 * 16.32543 * 7 2 1 10 10 C 1.40665 * 120.26547 * 26.34722 * 9 7 2 11 11 C 1.38002 * 119.77088 * 180.02562 * 10 9 7 12 12 N 1.39852 * 119.84461 * 179.97438 * 11 10 9 13 13 C 1.47163 * 110.99956 * 155.63606 * 12 11 10 14 14 C 1.54053 * 106.72626 * 219.16755 * 13 12 11 15 15 H 1.09003 * 115.36436 * 258.07166 * 14 13 12 16 16 C 1.53773 * 113.07398 * 119.79625 * 14 13 12 17 17 C 1.53725 * 87.37849 * 281.71574 * 16 14 13 18 18 C 1.53601 * 87.31496 * 334.57346 * 17 16 14 19 19 H 1.09010 * 115.80709 * 266.30379 * 18 17 16 20 20 C 1.47077 * 110.99397 * 33.99281 * 12 11 10 21 21 C 1.39607 * 120.31961 * 0.27857 * 11 10 9 22 22 C 1.38066 * 120.54599 * 359.44457 * 21 11 10 23 23 C 1.38729 * 120.21770 * 0.55341 * 22 21 11 24 24 N 1.38867 * 120.16135 * 179.74914 * 23 22 21 25 25 H 0.97009 * 119.99865 * 354.98621 * 1 2 3 26 26 H 1.08004 * 120.11787 * 0.02562 * 10 9 7 27 27 H 1.08999 * 110.01525 * 338.49288 * 13 12 11 28 28 H 1.08996 * 110.01573 * 99.83702 * 13 12 11 29 29 H 1.08999 * 113.56152 * 167.08436 * 16 14 13 30 30 H 1.08996 * 113.54619 * 36.34648 * 16 14 13 31 31 H 1.09005 * 113.57406 * 219.96400 * 17 16 14 32 32 H 1.08994 * 113.57662 * 89.17848 * 17 16 14 33 33 H 1.09004 * 109.76595 * 243.43890 * 20 12 11 34 34 H 1.08994 * 109.77311 * 4.16780 * 20 12 11 35 35 H 1.08000 * 119.72465 * 179.72309 * 21 11 10 36 36 H 1.07993 * 119.88968 * 180.27785 * 22 21 11 37 37 H 0.96996 * 120.00348 * 185.90005 * 24 23 22 38 38 H 0.97003 * 119.99854 * 5.88923 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4907 2.0463 -1.4001 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4401 0.7002 7 6 2.0084 -1.2115 0.0005 8 1 3.0557 -1.2303 0.2634 9 6 1.3458 -2.4084 -0.3422 10 6 0.2202 -2.3792 -1.1853 11 6 -0.4207 -3.5565 -1.5137 12 7 -1.5403 -3.5292 -2.3513 13 6 -1.7207 -4.8211 -3.0327 14 6 -2.1683 -4.5043 -4.4723 15 1 -3.2336 -4.6275 -4.6679 16 6 -1.1984 -5.0428 -5.5372 17 6 -0.2930 -3.8421 -5.2181 18 6 -1.5564 -3.1068 -4.7464 19 1 -2.0496 -2.4841 -5.4929 20 6 -1.4191 -2.4640 -3.3583 21 6 0.0394 -4.7740 -1.0087 22 6 1.1464 -4.8185 -0.1847 23 6 1.8077 -3.6487 0.1599 24 7 2.9179 -3.6943 0.9929 25 1 -0.4850 0.8369 0.0734 26 1 -0.1413 -1.4388 -1.5743 27 1 -0.7792 -5.3700 -3.0470 28 1 -2.4864 -5.4071 -2.5244 29 1 -1.6068 -5.0243 -6.5476 30 1 -0.7556 -6.0040 -5.2766 31 1 0.1672 -3.3965 -6.1001 32 1 0.4225 -4.0359 -4.4190 33 1 -2.2098 -1.7278 -3.2131 34 1 -0.4457 -1.9818 -3.2697 35 1 -0.4721 -5.6890 -1.2683 36 1 1.4958 -5.7666 0.1963 37 1 3.3268 -2.8707 1.3016 38 1 3.2842 -4.5499 1.2663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711222099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:36 Heat of formation + Delta-G solvation = 39.207667 kcal Electronic energy + Delta-G solvation = -19523.988447 eV Core-core repulsion = 16751.782610 eV Total energy + Delta-G solvation = -2772.205837 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92993 -39.43578 -36.61649 -35.39294 -33.48089 -31.66799 -30.23470 -29.20110 -27.14777 -26.07690 -24.80222 -23.03086 -22.58331 -20.98252 -19.58538 -18.97813 -17.68109 -17.38819 -17.21279 -16.64593 -16.40281 -15.29400 -14.99027 -14.79548 -14.60831 -14.21715 -14.04721 -13.72181 -13.46246 -13.14552 -13.08944 -12.83627 -12.76501 -12.66906 -12.38252 -12.07711 -11.79992 -11.48011 -11.18383 -11.05607 -11.01572 -10.97823 -10.92143 -9.53886 -9.18927 -8.50559 -7.63353 -6.04760 1.06178 1.35521 1.39098 1.50759 1.54114 2.24431 2.82702 3.21322 3.38140 3.61005 3.69003 3.79031 3.90642 3.94477 4.30826 4.47022 4.55207 4.57186 4.64670 4.75304 4.75691 4.84774 4.88829 5.02819 5.08521 5.16305 5.19456 5.27422 5.36377 5.39432 5.52410 5.60220 5.79378 5.95403 6.01129 6.18242 6.48805 6.58319 6.89919 6.97438 7.05825 7.36582 7.59229 8.48941 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.007233 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.431014 B = 3870.287549 C = 4719.884417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.187 4.187 11 C 0.067 3.933 12 N -0.486 5.486 13 C 0.055 3.945 14 C -0.116 4.116 15 H 0.109 0.891 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.126 4.126 19 H 0.126 0.874 20 C 0.049 3.951 21 C -0.227 4.227 22 C -0.171 4.171 23 C 0.090 3.910 24 N -0.876 5.876 25 H 0.280 0.720 26 H 0.105 0.895 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.391 0.609 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -5.749 -8.682 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.523 4.523 8 H 0.094 0.906 9 C 0.037 3.963 10 C -0.210 4.210 11 C -0.031 4.031 12 N -0.201 5.201 13 C -0.071 4.071 14 C -0.135 4.135 15 H 0.127 0.873 16 C -0.147 4.147 17 C -0.178 4.178 18 C -0.145 4.145 19 H 0.144 0.856 20 C -0.077 4.077 21 C -0.249 4.249 22 C -0.195 4.195 23 C -0.012 4.012 24 N -0.419 5.419 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.220 0.780 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.926 -5.484 -8.490 10.289 hybrid contribution 1.123 0.871 0.414 1.481 sum -0.802 -4.613 -8.076 9.335 Atomic orbital electron populations 1.69950 1.08769 1.29643 1.37781 1.26604 0.95398 1.03963 0.92095 0.85310 0.79163 0.76774 0.79006 1.19439 1.19894 1.18039 1.19383 0.97438 0.91773 1.43683 0.90626 1.17495 0.94332 0.91809 0.92628 1.20774 1.00494 0.95737 1.03972 1.18862 0.90709 0.94025 0.99500 1.60344 1.35896 1.05280 1.18577 1.22809 1.00752 0.90568 0.92998 1.23440 1.00391 0.96144 0.93514 0.87309 1.22770 0.95649 0.97211 0.99112 1.22848 0.96092 0.98101 1.00750 1.23712 0.98481 0.96181 0.96121 0.85621 1.22644 1.00546 0.94098 0.90413 1.20250 1.01250 0.95199 1.08180 1.20141 0.98944 0.95681 1.04772 1.18114 0.92602 0.93748 0.96746 1.41739 1.33467 1.09607 1.57057 0.90980 0.87715 0.92704 0.90412 0.87310 0.91138 0.90102 0.93161 0.91923 0.93882 0.86962 0.86752 0.78030 0.77993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.72 10.98 21.82 0.24 -45.48 16 2 C 0.03 1.67 5.15 85.23 0.44 2.11 16 3 Si 0.98 39.61 29.59 68.60 2.03 41.64 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.49 -26.49 8.43 23.36 0.20 -26.29 16 8 H 0.08 3.85 6.79 -2.91 -0.02 3.83 16 9 C 0.04 2.34 5.57 -21.18 -0.12 2.22 16 10 C -0.19 -10.18 7.20 22.81 0.16 -10.02 16 11 C 0.07 3.26 5.80 38.14 0.22 3.48 16 12 N -0.49 -20.37 5.23 -690.99 -3.62 -23.99 16 13 C 0.05 1.82 4.89 86.61 0.42 2.24 16 14 C -0.12 -2.98 5.22 -9.49 -0.05 -3.03 16 15 H 0.11 2.37 8.14 -2.39 -0.02 2.36 16 16 C -0.11 -2.36 7.52 31.10 0.23 -2.13 16 17 C -0.14 -3.85 7.23 31.04 0.22 -3.63 16 18 C -0.13 -3.57 4.95 -9.71 -0.05 -3.62 16 19 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 20 C 0.05 1.92 5.69 86.47 0.49 2.41 16 21 C -0.23 -10.29 8.61 22.56 0.19 -10.09 16 22 C -0.17 -7.72 9.87 22.35 0.22 -7.50 16 23 C 0.09 4.39 6.79 38.96 0.26 4.66 16 24 N -0.88 -35.14 8.97 -50.31 -0.45 -35.59 16 25 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 26 H 0.11 6.06 4.78 -2.91 -0.01 6.04 16 27 H 0.05 1.90 5.44 -2.39 -0.01 1.89 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.49 8.07 -2.39 -0.02 1.47 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.05 1.74 7.58 -2.39 -0.02 1.72 16 33 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.04 1.93 5.76 -2.39 -0.01 1.91 16 35 H 0.11 4.51 6.37 -2.91 -0.02 4.49 16 36 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.39 15.59 7.12 -92.71 -0.66 14.93 16 38 H 0.39 12.86 8.84 -92.71 -0.82 12.04 16 Total: -1.00 -62.83 295.01 0.68 -62.15 By element: Atomic # 1 Polarization: 50.84 SS G_CDS: -0.38 Total: 50.46 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 2.86 Total: -49.19 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -3.83 Total: -105.06 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -62.83 0.68 -62.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711222099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.362 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds