Wall clock time and date at job start Mon Mar 30 2020 07:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86804 * 119.99557 * 2 1 4 4 H 1.48502 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47345 * 299.99649 * 3 2 1 6 6 H 1.48502 * 109.46940 * 59.99769 * 3 2 1 7 7 C 1.39879 * 120.00627 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00447 * 169.51351 * 7 2 1 9 9 C 1.41040 * 119.99606 * 349.51832 * 7 2 1 10 10 C 1.40662 * 120.26623 * 330.55430 * 9 7 2 11 11 C 1.38006 * 119.76741 * 180.23042 * 10 9 7 12 12 N 1.39846 * 119.84149 * 179.77742 * 11 10 9 13 13 C 1.48230 * 110.79575 * 205.04500 * 12 11 10 14 14 C 1.51726 * 102.69322 * 149.00327 * 13 12 11 15 15 H 1.08995 * 113.37127 * 68.21305 * 14 13 12 16 16 C 1.49770 * 129.77941 * 228.00481 * 14 13 12 17 17 C 1.56694 * 81.08098 * 130.97684 * 16 14 13 18 18 C 1.49461 * 80.76390 * 314.03557 * 17 16 14 19 19 H 1.08996 * 113.33977 * 293.38867 * 18 17 16 20 20 C 1.49663 * 110.99745 * 322.54152 * 12 11 10 21 21 C 1.39602 * 120.32062 * 359.49517 * 11 10 9 22 22 C 1.38058 * 120.54720 * 0.23491 * 21 11 10 23 23 C 1.38739 * 120.22440 * 0.02562 * 22 21 11 24 24 N 1.38861 * 120.16484 * 179.97438 * 23 22 21 25 25 H 0.96995 * 120.00267 * 5.01771 * 1 2 3 26 26 H 1.08001 * 120.11502 * 0.02562 * 10 9 7 27 27 H 1.08994 * 111.66105 * 30.06367 * 13 12 11 28 28 H 1.09000 * 109.43279 * 266.91781 * 13 12 11 29 29 H 1.09002 * 114.59340 * 244.02684 * 16 14 13 30 30 H 1.09000 * 114.58906 * 17.92884 * 16 14 13 31 31 H 1.09003 * 114.64559 * 67.00413 * 17 16 14 32 32 H 1.09003 * 114.64853 * 201.01859 * 17 16 14 33 33 H 1.09003 * 110.40537 * 128.76674 * 20 12 11 34 34 H 1.09003 * 110.50070 * 6.39339 * 20 12 11 35 35 H 1.07997 * 119.72680 * 180.25590 * 21 11 10 36 36 H 1.08004 * 119.88735 * 180.02562 * 22 21 11 37 37 H 0.97000 * 119.99960 * 5.03648 * 24 23 22 38 38 H 0.96996 * 120.00032 * 185.05040 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3466 0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0086 -1.2113 0.0005 8 1 3.0750 -1.2192 -0.1697 9 6 1.3211 -2.4225 0.2233 10 6 0.1610 -2.4433 1.0185 11 6 -0.5009 -3.6350 1.2336 12 7 -1.6518 -3.6583 2.0278 13 6 -1.8565 -5.0023 2.6184 14 6 -2.5385 -4.6868 3.9365 15 1 -3.5469 -4.2907 3.8177 16 6 -2.2369 -5.1876 5.3155 17 6 -2.3169 -3.6538 5.6261 18 6 -1.4668 -3.6058 4.3977 19 1 -0.4828 -4.0539 4.5357 20 6 -1.5256 -2.7148 3.1827 21 6 -0.0306 -4.8164 0.6575 22 6 1.1035 -4.8101 -0.1298 23 6 1.7896 -3.6258 -0.3566 24 7 2.9305 -3.6210 -1.1483 25 1 -0.4850 0.8368 -0.0735 26 1 -0.2085 -1.5305 1.4619 27 1 -0.9104 -5.5180 2.7827 28 1 -2.5104 -5.5870 1.9714 29 1 -3.0309 -5.7836 5.7654 30 1 -1.2446 -5.6231 5.4329 31 1 -3.3090 -3.2176 5.5096 32 1 -1.8110 -3.3485 6.5420 33 1 -2.3945 -2.0587 3.2342 34 1 -0.6113 -2.1274 3.0976 35 1 -0.5584 -5.7429 0.8288 36 1 1.4577 -5.7303 -0.5706 37 1 3.2084 -4.4313 -1.6035 38 1 3.4496 -2.8075 -1.2459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711222103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:40 Heat of formation + Delta-G solvation = 115.102277 kcal Electronic energy + Delta-G solvation = -19354.897618 eV Core-core repulsion = 16585.982819 eV Total energy + Delta-G solvation = -2768.914800 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -41.21730 -37.94709 -35.48539 -33.48750 -32.05834 -29.76070 -28.49125 -27.75924 -25.32725 -24.23206 -23.39527 -21.12703 -20.44895 -20.25927 -19.07825 -17.16363 -16.04645 -15.61890 -14.93785 -14.83747 -14.62647 -14.37317 -14.07479 -13.21996 -12.87718 -12.55772 -12.32847 -11.98073 -11.77223 -11.69041 -11.42232 -11.27839 -11.20762 -10.99844 -10.91239 -10.77445 -10.47403 -10.33902 -9.87662 -9.39088 -9.35311 -9.10860 -8.71977 -7.98820 -7.24295 -6.55982 -5.88694 -4.11874 2.85425 3.13171 3.16694 3.18657 3.25155 3.87731 4.02712 4.51249 4.58369 4.81326 4.89628 5.12820 5.32602 5.58096 5.62284 5.71773 5.72586 5.83399 5.92332 5.98214 6.08637 6.14966 6.24551 6.29265 6.48753 6.52799 6.54048 6.67496 6.86775 7.08363 7.22896 7.30316 7.58182 7.71696 7.78499 8.04731 8.28950 8.37170 8.66400 8.88073 8.92285 9.16164 9.23255 10.40291 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.006795 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.798136 B = 4119.543594 C = 5114.208460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.071 0.929 9 C 0.075 3.925 10 C -0.154 4.154 11 C 0.060 3.940 12 N -0.459 5.459 13 C 0.059 3.941 14 C -0.162 4.162 15 H 0.103 0.897 16 C -0.109 4.109 17 C -0.107 4.107 18 C -0.174 4.174 19 H 0.092 0.908 20 C 0.053 3.947 21 C -0.217 4.217 22 C -0.170 4.170 23 C 0.108 3.892 24 N -0.886 5.886 25 H 0.275 0.725 26 H 0.129 0.871 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.376 0.624 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -5.227 7.270 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.496 4.496 8 H 0.089 0.911 9 C 0.070 3.930 10 C -0.177 4.177 11 C -0.037 4.037 12 N -0.175 5.175 13 C -0.067 4.067 14 C -0.181 4.181 15 H 0.121 0.879 16 C -0.147 4.147 17 C -0.145 4.145 18 C -0.193 4.193 19 H 0.111 0.889 20 C -0.072 4.072 21 C -0.239 4.239 22 C -0.194 4.194 23 C 0.007 3.993 24 N -0.428 5.428 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.201 0.799 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.834 -4.877 7.019 9.005 hybrid contribution 1.210 0.590 -0.141 1.353 sum -1.625 -4.287 6.878 8.266 Atomic orbital electron populations 1.69835 1.07063 1.28464 1.37847 1.25755 0.94790 1.00614 0.93074 0.86323 0.80595 0.81703 0.78337 1.18837 1.20262 1.20053 1.19133 0.95259 0.90376 1.44834 0.91137 1.17108 0.93400 0.90526 0.91963 1.20890 0.98485 0.95415 1.02898 1.18748 0.90368 0.94654 0.99922 1.62728 1.34536 1.04312 1.15903 1.22225 0.99159 0.91832 0.93507 1.23685 0.99224 1.01633 0.93587 0.87927 1.22729 1.01630 0.95649 0.94655 1.22664 0.99635 0.95825 0.96339 1.23740 0.97944 1.00655 0.96999 0.88945 1.22372 1.02660 0.94824 0.87388 1.19974 1.00235 0.95260 1.08453 1.19816 0.99048 0.94872 1.05647 1.18002 0.90623 0.94194 0.96499 1.41870 1.29893 1.13886 1.57105 0.91375 0.85352 0.92496 0.91276 0.91781 0.89418 0.89247 0.91825 0.91094 0.90392 0.89175 0.89531 0.79925 0.78155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.34 10.87 55.54 0.60 -20.74 16 2 C 0.07 1.85 5.25 -17.33 -0.09 1.76 16 3 Si 0.90 19.05 29.58 -169.99 -5.03 14.02 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.16 8.45 -37.91 -0.32 -12.48 16 8 H 0.07 1.76 6.75 -52.49 -0.35 1.40 16 9 C 0.08 2.00 5.56 -106.65 -0.59 1.41 16 10 C -0.15 -4.03 7.25 -38.75 -0.28 -4.31 16 11 C 0.06 1.44 5.77 -83.78 -0.48 0.96 16 12 N -0.46 -9.54 5.48 -169.78 -0.93 -10.47 16 13 C 0.06 1.02 4.85 -3.74 -0.02 1.01 16 14 C -0.16 -2.30 4.51 -103.13 -0.46 -2.77 16 15 H 0.10 1.44 7.60 -51.93 -0.39 1.05 16 16 C -0.11 -1.26 8.07 -41.55 -0.34 -1.59 16 17 C -0.11 -1.27 8.10 -40.12 -0.32 -1.59 16 18 C -0.17 -2.65 4.25 -105.33 -0.45 -3.09 16 19 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 20 C 0.05 1.00 6.14 -3.39 -0.02 0.98 16 21 C -0.22 -4.98 8.69 -39.14 -0.34 -5.32 16 22 C -0.17 -3.89 9.87 -39.46 -0.39 -4.28 16 23 C 0.11 2.62 6.79 -83.23 -0.56 2.05 16 24 N -0.89 -17.97 8.97 32.75 0.29 -17.68 16 25 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 26 H 0.13 3.50 4.81 -52.49 -0.25 3.25 16 27 H 0.06 1.01 6.82 -51.93 -0.35 0.66 16 28 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.00 7.52 -51.93 -0.39 0.61 16 31 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.64 5.69 -51.93 -0.30 1.35 16 35 H 0.09 1.88 6.53 -52.49 -0.34 1.53 16 36 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.38 6.42 8.84 -40.82 -0.36 6.06 16 38 H 0.39 7.74 7.10 -40.82 -0.29 7.45 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -28.26 295.27 -10.34 -38.61 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -5.06 Total: 19.09 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -4.67 Total: -27.28 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.03 Total: -48.88 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.26 -10.34 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711222103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.709 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds