Wall clock time and date at job start Mon Mar 30 2020 07:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86804 * 119.99557 * 2 1 4 4 H 1.48502 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47345 * 299.99649 * 3 2 1 6 6 H 1.48502 * 109.46940 * 59.99769 * 3 2 1 7 7 C 1.39879 * 120.00627 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00447 * 169.51351 * 7 2 1 9 9 C 1.41040 * 119.99606 * 349.51832 * 7 2 1 10 10 C 1.40662 * 120.26623 * 330.55430 * 9 7 2 11 11 C 1.38006 * 119.76741 * 180.23042 * 10 9 7 12 12 N 1.39846 * 119.84149 * 179.77742 * 11 10 9 13 13 C 1.48230 * 110.79575 * 205.04500 * 12 11 10 14 14 C 1.51726 * 102.69322 * 149.00327 * 13 12 11 15 15 H 1.08995 * 113.37127 * 68.21305 * 14 13 12 16 16 C 1.49770 * 129.77941 * 228.00481 * 14 13 12 17 17 C 1.56694 * 81.08098 * 130.97684 * 16 14 13 18 18 C 1.49461 * 80.76390 * 314.03557 * 17 16 14 19 19 H 1.08996 * 113.33977 * 293.38867 * 18 17 16 20 20 C 1.49663 * 110.99745 * 322.54152 * 12 11 10 21 21 C 1.39602 * 120.32062 * 359.49517 * 11 10 9 22 22 C 1.38058 * 120.54720 * 0.23491 * 21 11 10 23 23 C 1.38739 * 120.22440 * 0.02562 * 22 21 11 24 24 N 1.38861 * 120.16484 * 179.97438 * 23 22 21 25 25 H 0.96995 * 120.00267 * 5.01771 * 1 2 3 26 26 H 1.08001 * 120.11502 * 0.02562 * 10 9 7 27 27 H 1.08994 * 111.66105 * 30.06367 * 13 12 11 28 28 H 1.09000 * 109.43279 * 266.91781 * 13 12 11 29 29 H 1.09002 * 114.59340 * 244.02684 * 16 14 13 30 30 H 1.09000 * 114.58906 * 17.92884 * 16 14 13 31 31 H 1.09003 * 114.64559 * 67.00413 * 17 16 14 32 32 H 1.09003 * 114.64853 * 201.01859 * 17 16 14 33 33 H 1.09003 * 110.40537 * 128.76674 * 20 12 11 34 34 H 1.09003 * 110.50070 * 6.39339 * 20 12 11 35 35 H 1.07997 * 119.72680 * 180.25590 * 21 11 10 36 36 H 1.08004 * 119.88735 * 180.02562 * 22 21 11 37 37 H 0.97000 * 119.99960 * 5.03648 * 24 23 22 38 38 H 0.96996 * 120.00032 * 185.05040 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3466 0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0086 -1.2113 0.0005 8 1 3.0750 -1.2192 -0.1697 9 6 1.3211 -2.4225 0.2233 10 6 0.1610 -2.4433 1.0185 11 6 -0.5009 -3.6350 1.2336 12 7 -1.6518 -3.6583 2.0278 13 6 -1.8565 -5.0023 2.6184 14 6 -2.5385 -4.6868 3.9365 15 1 -3.5469 -4.2907 3.8177 16 6 -2.2369 -5.1876 5.3155 17 6 -2.3169 -3.6538 5.6261 18 6 -1.4668 -3.6058 4.3977 19 1 -0.4828 -4.0539 4.5357 20 6 -1.5256 -2.7148 3.1827 21 6 -0.0306 -4.8164 0.6575 22 6 1.1035 -4.8101 -0.1298 23 6 1.7896 -3.6258 -0.3566 24 7 2.9305 -3.6210 -1.1483 25 1 -0.4850 0.8368 -0.0735 26 1 -0.2085 -1.5305 1.4619 27 1 -0.9104 -5.5180 2.7827 28 1 -2.5104 -5.5870 1.9714 29 1 -3.0309 -5.7836 5.7654 30 1 -1.2446 -5.6231 5.4329 31 1 -3.3090 -3.2176 5.5096 32 1 -1.8110 -3.3485 6.5420 33 1 -2.3945 -2.0587 3.2342 34 1 -0.6113 -2.1274 3.0976 35 1 -0.5584 -5.7429 0.8288 36 1 1.4577 -5.7303 -0.5706 37 1 3.2084 -4.4313 -1.6035 38 1 3.4496 -2.8075 -1.2459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711222103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:40 Heat of formation + Delta-G solvation = 97.973447 kcal Electronic energy + Delta-G solvation = -19355.640380 eV Core-core repulsion = 16585.982819 eV Total energy + Delta-G solvation = -2769.657562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.49186 -39.67936 -37.04571 -35.37673 -33.71091 -31.59024 -30.00542 -29.32589 -27.10601 -25.84146 -24.60600 -22.77651 -21.94875 -21.52197 -20.70311 -19.01178 -17.78897 -17.35750 -16.62735 -16.42022 -16.18386 -15.68436 -15.32482 -14.86857 -14.55034 -14.18290 -13.91680 -13.57273 -13.39360 -13.21477 -12.90487 -12.77025 -12.64297 -12.61123 -12.25287 -12.08342 -12.04136 -11.82471 -11.51666 -11.20642 -11.05885 -10.99374 -9.89918 -9.63798 -9.16829 -8.46163 -7.67542 -6.07738 1.04524 1.31471 1.39358 1.51434 1.52680 2.25302 2.67384 2.83667 3.18743 3.56312 3.65836 3.80649 3.83088 3.93285 4.27556 4.41894 4.47924 4.52967 4.65046 4.71992 4.76805 4.87127 4.95923 4.98267 5.09343 5.14059 5.18286 5.20795 5.33142 5.38634 5.46888 5.48027 5.76223 5.89828 5.99140 6.17040 6.46293 6.48522 6.86567 6.97589 7.04656 7.34036 7.57005 8.52258 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.006795 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.798136 B = 4119.543594 C = 5114.208460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.028 3.972 3 Si 0.978 3.022 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.075 0.925 9 C 0.038 3.962 10 C -0.176 4.176 11 C 0.054 3.946 12 N -0.477 5.477 13 C 0.057 3.943 14 C -0.148 4.148 15 H 0.109 0.891 16 C -0.094 4.094 17 C -0.095 4.095 18 C -0.181 4.181 19 H 0.081 0.919 20 C 0.054 3.946 21 C -0.218 4.218 22 C -0.176 4.176 23 C 0.097 3.903 24 N -0.874 5.874 25 H 0.278 0.722 26 H 0.107 0.893 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.393 0.607 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -6.343 8.347 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.184 4.184 3 Si 0.801 3.199 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.521 4.521 8 H 0.093 0.907 9 C 0.033 3.967 10 C -0.199 4.199 11 C -0.044 4.044 12 N -0.192 5.192 13 C -0.069 4.069 14 C -0.167 4.167 15 H 0.127 0.873 16 C -0.131 4.131 17 C -0.133 4.133 18 C -0.201 4.201 19 H 0.100 0.900 20 C -0.071 4.071 21 C -0.241 4.241 22 C -0.200 4.200 23 C -0.006 4.006 24 N -0.417 5.417 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.221 0.779 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.059 -6.025 8.091 10.541 hybrid contribution 1.228 0.843 -0.487 1.567 sum -1.831 -5.183 7.603 9.382 Atomic orbital electron populations 1.69947 1.08658 1.29398 1.39023 1.26605 0.95513 1.03956 0.92280 0.85212 0.79401 0.77018 0.78316 1.17996 1.19653 1.19835 1.19388 0.95571 0.91159 1.45989 0.90688 1.17505 0.94256 0.91897 0.93048 1.20843 0.99490 0.95629 1.03949 1.18932 0.90904 0.94246 1.00299 1.62658 1.33013 1.06591 1.16983 1.22251 0.99360 0.89936 0.95340 1.23770 0.98685 1.01068 0.93180 0.87308 1.22700 1.02733 0.95695 0.91978 1.22720 0.99431 0.96164 0.94980 1.23745 0.98441 0.99847 0.98047 0.90048 1.22250 1.00941 0.94936 0.89021 1.20310 1.00282 0.95739 1.07722 1.20170 0.98833 0.95603 1.05385 1.18168 0.91671 0.93928 0.96785 1.41746 1.28698 1.14865 1.56413 0.91158 0.87547 0.93065 0.90772 0.88986 0.89227 0.88027 0.90275 0.90986 0.93807 0.86933 0.86605 0.77921 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.59 10.87 21.82 0.24 -46.35 16 2 C 0.03 1.46 5.25 85.23 0.45 1.90 16 3 Si 0.98 39.92 29.58 68.60 2.03 41.95 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.49 -26.45 8.45 23.35 0.20 -26.25 16 8 H 0.08 3.82 6.75 -2.91 -0.02 3.80 16 9 C 0.04 2.10 5.56 -21.18 -0.12 1.98 16 10 C -0.18 -9.68 7.25 22.81 0.17 -9.51 16 11 C 0.05 2.65 5.77 38.14 0.22 2.87 16 12 N -0.48 -20.15 5.48 -691.07 -3.78 -23.93 16 13 C 0.06 1.91 4.85 85.63 0.42 2.33 16 14 C -0.15 -3.88 4.51 -18.90 -0.09 -3.96 16 15 H 0.11 2.76 7.60 -2.39 -0.02 2.74 16 16 C -0.09 -1.82 8.07 20.99 0.17 -1.65 16 17 C -0.10 -1.98 8.10 21.92 0.18 -1.80 16 18 C -0.18 -5.37 4.25 -20.32 -0.09 -5.45 16 19 H 0.08 2.59 7.36 -2.39 -0.02 2.57 16 20 C 0.05 2.10 6.14 85.04 0.52 2.62 16 21 C -0.22 -9.95 8.69 22.56 0.20 -9.76 16 22 C -0.18 -7.92 9.87 22.35 0.22 -7.70 16 23 C 0.10 4.72 6.79 38.97 0.26 4.99 16 24 N -0.87 -34.97 8.97 -50.31 -0.45 -35.42 16 25 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 26 H 0.11 6.22 4.81 -2.91 -0.01 6.21 16 27 H 0.05 1.77 6.82 -2.39 -0.02 1.76 16 28 H 0.07 2.39 8.12 -2.39 -0.02 2.37 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.76 7.52 -2.39 -0.02 1.74 16 31 H 0.10 1.91 7.61 -2.39 -0.02 1.90 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.04 1.98 5.69 -2.39 -0.01 1.97 16 35 H 0.11 4.53 6.53 -2.91 -0.02 4.51 16 36 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.39 12.84 8.84 -92.71 -0.82 12.02 16 38 H 0.39 15.48 7.10 -92.71 -0.66 14.82 16 Total: -1.00 -63.33 295.27 0.35 -62.98 By element: Atomic # 1 Polarization: 50.54 SS G_CDS: -0.38 Total: 50.16 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 2.71 Total: -49.38 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -4.00 Total: -105.70 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -63.33 0.35 -62.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711222103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.949 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds