Wall clock time and date at job start Mon Mar 30 2020 07:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47126 * 119.99953 * 2 1 4 4 C 1.32870 * 119.99898 * 183.82852 * 3 2 1 5 5 C 1.50700 * 119.99953 * 5.12468 * 4 3 2 6 6 C 1.52995 * 109.47472 * 126.37218 * 5 4 3 7 7 N 1.46502 * 109.47341 * 179.97438 * 6 5 4 8 8 C 1.39854 * 120.00015 * 179.97438 * 7 6 5 9 9 C 1.39601 * 119.83834 * 0.02562 * 8 7 6 10 10 C 1.38054 * 120.54501 * 179.97438 * 9 8 7 11 11 C 1.38739 * 120.22340 * 0.02562 * 10 9 8 12 12 N 1.38869 * 120.16029 * 179.97438 * 11 10 9 13 13 C 1.41556 * 119.67162 * 0.02562 * 11 10 9 14 14 C 1.41026 * 120.26487 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00396 * 28.94403 * 14 13 11 16 16 C 1.39893 * 119.99844 * 208.94794 * 14 13 11 17 17 N 1.30901 * 119.99909 * 16.44299 * 16 14 13 18 18 Si 1.86799 * 119.99799 * 196.44609 * 16 14 13 19 19 H 1.48497 * 109.47261 * 94.97811 * 18 16 14 20 20 H 1.48501 * 109.46863 * 214.97684 * 18 16 14 21 21 H 1.48496 * 109.47085 * 334.97807 * 18 16 14 22 22 C 1.38002 * 119.83863 * 179.72690 * 8 7 6 23 23 H 1.08001 * 119.99791 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.00202 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00359 * 179.97438 * 2 1 3 26 26 H 1.08000 * 119.99604 * 3.83648 * 3 2 1 27 27 H 1.08001 * 120.00039 * 185.38639 * 4 3 2 28 28 H 1.09004 * 109.46482 * 246.37209 * 5 4 3 29 29 H 1.09004 * 109.47380 * 6.36709 * 5 4 3 30 30 H 1.09005 * 109.47061 * 300.00029 * 6 5 4 31 31 H 1.09004 * 109.47234 * 59.99401 * 6 5 4 32 32 H 0.96998 * 120.00106 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.72659 * 359.97438 * 9 8 7 34 34 H 1.08006 * 119.88380 * 180.02562 * 10 9 8 35 35 H 0.96997 * 119.99963 * 0.02562 * 12 11 10 36 36 H 0.96995 * 119.99447 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99570 * 180.02562 * 17 16 14 38 38 H 1.08008 * 120.11352 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 3.3908 1.2754 -0.0768 5 6 4.1350 -0.0191 -0.2801 6 6 5.0623 0.1102 -1.4901 7 7 5.7862 -1.1481 -1.6874 8 6 6.6984 -1.2725 -2.7402 9 6 6.9168 -0.1953 -3.6009 10 6 7.8142 -0.3018 -4.6445 11 6 8.5099 -1.4846 -4.8494 12 7 9.4119 -1.5905 -5.8999 13 6 8.2948 -2.5832 -3.9829 14 6 8.9955 -3.7912 -4.1794 15 1 9.9765 -3.7792 -4.6308 16 6 8.4198 -5.0051 -3.7895 17 7 7.1350 -5.0723 -3.5477 18 14 9.4844 -6.5299 -3.6139 19 1 9.9039 -6.6803 -2.1974 20 1 8.7086 -7.7258 -4.0301 21 1 10.6870 -6.3957 -4.4747 22 6 7.3827 -2.4574 -2.9195 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9352 -0.0004 25 1 1.8687 -0.9352 0.0004 26 1 1.5261 2.2084 0.0626 27 1 3.9359 2.2037 0.0106 28 1 4.7259 -0.2418 0.6084 29 1 3.4218 -0.8250 -0.4534 30 1 4.4714 0.3329 -2.3786 31 1 5.7756 0.9160 -1.3169 32 1 5.6329 -1.8950 -1.0878 33 1 6.3793 0.7291 -3.4490 34 1 7.9753 0.5385 -5.3037 35 1 9.5571 -0.8364 -6.4923 36 1 9.8966 -2.4187 -6.0412 37 1 6.7360 -5.9139 -3.2770 38 1 7.2149 -3.2869 -2.2485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713454285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:15 Heat of formation + Delta-G solvation = 51.840446 kcal Electronic energy + Delta-G solvation = -17971.577430 eV Core-core repulsion = 15199.919392 eV Total energy + Delta-G solvation = -2771.658039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -38.02082 -36.86298 -35.11520 -33.40278 -32.69277 -31.08784 -29.41241 -28.43641 -25.83826 -24.68326 -22.71831 -21.83791 -20.89270 -19.64188 -18.38817 -17.01946 -16.09762 -15.76576 -15.44668 -15.12697 -14.66412 -14.64928 -14.18102 -13.87786 -12.83428 -12.49333 -12.40456 -12.21116 -12.18307 -11.81099 -11.61646 -11.37583 -11.29923 -11.01974 -10.96909 -10.79556 -10.61227 -10.34434 -9.87266 -9.67173 -9.28285 -9.02786 -8.39136 -7.74416 -7.18690 -6.59462 -5.51335 -4.05133 1.28939 2.92839 3.01834 3.15537 3.18282 3.31839 3.49663 4.06047 4.40127 4.75516 4.84121 4.98466 5.18306 5.27306 5.41966 5.45296 5.60664 5.64215 5.79701 5.88727 6.14894 6.28559 6.37955 6.38457 6.45402 6.59496 6.64849 6.85120 7.14133 7.16629 7.32910 7.50550 7.72238 7.88886 7.99595 8.14556 8.48135 8.76159 8.91785 8.96467 9.01758 9.27697 9.36064 10.41525 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.004307 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.697775 B = 6498.800914 C = 7495.284705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 C -0.147 4.147 4 C -0.125 4.125 5 C -0.114 4.114 6 C 0.146 3.854 7 N -0.764 5.764 8 C 0.176 3.824 9 C -0.253 4.253 10 C -0.153 4.153 11 C 0.087 3.913 12 N -0.889 5.889 13 C 0.098 3.902 14 C -0.469 4.469 15 H 0.071 0.929 16 C 0.078 3.922 17 N -0.802 5.802 18 Si 0.901 3.099 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.265 1.265 22 C -0.197 4.197 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.387 0.613 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.374 0.626 36 H 0.389 0.611 37 H 0.274 0.726 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.800 7.130 5.633 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.145 4.145 3 C -0.165 4.165 4 C -0.144 4.144 5 C -0.151 4.151 6 C 0.020 3.980 7 N -0.400 5.400 8 C 0.078 3.922 9 C -0.276 4.276 10 C -0.178 4.178 11 C -0.014 4.014 12 N -0.431 5.431 13 C 0.092 3.908 14 C -0.500 4.500 15 H 0.089 0.911 16 C -0.138 4.138 17 N -0.429 5.429 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.222 4.222 23 H 0.114 0.886 24 H 0.117 0.883 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.220 0.780 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.199 0.801 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.094 7.137 5.720 11.575 hybrid contribution 0.462 -0.987 -0.017 1.090 sum -6.632 6.150 5.703 10.693 Atomic orbital electron populations 1.24322 0.95688 1.01723 1.00840 1.22173 0.95413 0.97313 0.99604 1.21858 0.94680 0.96615 1.03385 1.23333 0.94918 0.98695 0.97439 1.21044 0.98824 0.96151 0.99052 1.20874 0.93182 0.88221 0.95705 1.44318 1.47638 1.13909 1.34108 1.17499 0.91452 0.94535 0.88737 1.19621 1.08449 0.97540 1.02030 1.19718 1.01898 0.95643 1.00507 1.17885 0.96495 0.95362 0.91691 1.41809 1.50079 1.17087 1.34141 1.16952 0.93089 0.90954 0.89761 1.19116 1.02935 0.90534 1.37432 0.91084 1.25727 0.94616 1.00213 0.93210 1.69885 1.10561 1.27382 1.35077 0.86435 0.80813 0.80836 0.79294 1.19716 1.20644 1.18934 1.20397 1.04746 0.95457 1.01573 0.88633 0.88278 0.86362 0.86924 0.86701 0.90581 0.90417 0.93525 0.93572 0.78013 0.89680 0.89752 0.80120 0.78304 0.91513 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 14.43 28.88 0.42 -1.36 16 2 C -0.13 -1.37 9.24 -37.83 -0.35 -1.72 16 3 C -0.15 -1.56 9.83 -37.83 -0.37 -1.93 16 4 C -0.13 -1.38 9.59 -36.16 -0.35 -1.72 16 5 C -0.11 -1.41 5.56 -27.89 -0.16 -1.57 16 6 C 0.15 2.31 4.89 -4.04 -0.02 2.29 16 7 N -0.76 -14.83 5.74 -58.64 -0.34 -15.17 16 8 C 0.18 4.17 6.64 -83.78 -0.56 3.62 16 9 C -0.25 -5.85 9.31 -39.14 -0.36 -6.22 16 10 C -0.15 -3.58 9.86 -39.46 -0.39 -3.97 16 11 C 0.09 2.13 6.79 -83.22 -0.56 1.57 16 12 N -0.89 -18.50 8.98 32.75 0.29 -18.20 16 13 C 0.10 2.62 5.53 -106.66 -0.59 2.03 16 14 C -0.47 -12.44 8.40 -37.91 -0.32 -12.76 16 15 H 0.07 1.80 6.81 -52.49 -0.36 1.44 16 16 C 0.08 2.00 5.13 -17.33 -0.09 1.91 16 17 N -0.80 -21.26 11.21 55.55 0.62 -20.64 16 18 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 C -0.20 -5.18 8.48 -38.75 -0.33 -5.51 16 23 H 0.10 0.79 8.05 -52.49 -0.42 0.37 16 24 H 0.10 0.83 8.06 -52.49 -0.42 0.40 16 25 H 0.12 1.29 5.93 -52.49 -0.31 0.97 16 26 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.97 5.37 -51.93 -0.28 0.69 16 30 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 31 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 32 H 0.39 7.10 8.48 -40.82 -0.35 6.75 16 33 H 0.09 1.79 6.69 -52.49 -0.35 1.44 16 34 H 0.08 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 36 H 0.39 7.95 7.10 -40.82 -0.29 7.66 16 37 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 38 H 0.11 3.03 6.48 -52.48 -0.34 2.69 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -28.84 318.81 -8.80 -37.64 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -5.13 Total: 22.82 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -4.03 Total: -25.34 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.58 Total: -54.01 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.84 -8.80 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713454285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.478 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.05 seconds