Wall clock time and date at job start Mon Mar 30 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47126 * 119.99953 * 2 1 4 4 C 1.32870 * 119.99898 * 183.82852 * 3 2 1 5 5 C 1.50700 * 119.99953 * 5.12468 * 4 3 2 6 6 C 1.52995 * 109.47472 * 126.37218 * 5 4 3 7 7 N 1.46502 * 109.47341 * 179.97438 * 6 5 4 8 8 C 1.39854 * 120.00015 * 179.97438 * 7 6 5 9 9 C 1.39601 * 119.83834 * 0.02562 * 8 7 6 10 10 C 1.38054 * 120.54501 * 179.97438 * 9 8 7 11 11 C 1.38739 * 120.22340 * 0.02562 * 10 9 8 12 12 N 1.38869 * 120.16029 * 179.97438 * 11 10 9 13 13 C 1.41556 * 119.67162 * 0.02562 * 11 10 9 14 14 C 1.41026 * 120.26487 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00396 * 28.94403 * 14 13 11 16 16 C 1.39893 * 119.99844 * 208.94794 * 14 13 11 17 17 N 1.30901 * 119.99909 * 16.44299 * 16 14 13 18 18 Si 1.86799 * 119.99799 * 196.44609 * 16 14 13 19 19 H 1.48497 * 109.47261 * 94.97811 * 18 16 14 20 20 H 1.48501 * 109.46863 * 214.97684 * 18 16 14 21 21 H 1.48496 * 109.47085 * 334.97807 * 18 16 14 22 22 C 1.38002 * 119.83863 * 179.72690 * 8 7 6 23 23 H 1.08001 * 119.99791 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.00202 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00359 * 179.97438 * 2 1 3 26 26 H 1.08000 * 119.99604 * 3.83648 * 3 2 1 27 27 H 1.08001 * 120.00039 * 185.38639 * 4 3 2 28 28 H 1.09004 * 109.46482 * 246.37209 * 5 4 3 29 29 H 1.09004 * 109.47380 * 6.36709 * 5 4 3 30 30 H 1.09005 * 109.47061 * 300.00029 * 6 5 4 31 31 H 1.09004 * 109.47234 * 59.99401 * 6 5 4 32 32 H 0.96998 * 120.00106 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.72659 * 359.97438 * 9 8 7 34 34 H 1.08006 * 119.88380 * 180.02562 * 10 9 8 35 35 H 0.96997 * 119.99963 * 0.02562 * 12 11 10 36 36 H 0.96995 * 119.99447 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99570 * 180.02562 * 17 16 14 38 38 H 1.08008 * 120.11352 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 3.3908 1.2754 -0.0768 5 6 4.1350 -0.0191 -0.2801 6 6 5.0623 0.1102 -1.4901 7 7 5.7862 -1.1481 -1.6874 8 6 6.6984 -1.2725 -2.7402 9 6 6.9168 -0.1953 -3.6009 10 6 7.8142 -0.3018 -4.6445 11 6 8.5099 -1.4846 -4.8494 12 7 9.4119 -1.5905 -5.8999 13 6 8.2948 -2.5832 -3.9829 14 6 8.9955 -3.7912 -4.1794 15 1 9.9765 -3.7792 -4.6308 16 6 8.4198 -5.0051 -3.7895 17 7 7.1350 -5.0723 -3.5477 18 14 9.4844 -6.5299 -3.6139 19 1 9.9039 -6.6803 -2.1974 20 1 8.7086 -7.7258 -4.0301 21 1 10.6870 -6.3957 -4.4747 22 6 7.3827 -2.4574 -2.9195 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9352 -0.0004 25 1 1.8687 -0.9352 0.0004 26 1 1.5261 2.2084 0.0626 27 1 3.9359 2.2037 0.0106 28 1 4.7259 -0.2418 0.6084 29 1 3.4218 -0.8250 -0.4534 30 1 4.4714 0.3329 -2.3786 31 1 5.7756 0.9160 -1.3169 32 1 5.6329 -1.8950 -1.0878 33 1 6.3793 0.7291 -3.4490 34 1 7.9753 0.5385 -5.3037 35 1 9.5571 -0.8364 -6.4923 36 1 9.8966 -2.4187 -6.0412 37 1 6.7360 -5.9139 -3.2770 38 1 7.2149 -3.2869 -2.2485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713454285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:07 Heat of formation + Delta-G solvation = 35.272600 kcal Electronic energy + Delta-G solvation = -17972.295866 eV Core-core repulsion = 15199.919392 eV Total energy + Delta-G solvation = -2772.376474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.77666 -38.00308 -36.49223 -35.29480 -34.03514 -32.34380 -31.32032 -29.72382 -27.48700 -26.49100 -24.09988 -22.80735 -22.50548 -21.42848 -19.32324 -18.82923 -17.75898 -17.25407 -16.77750 -16.67109 -16.37695 -15.94443 -15.36592 -15.12024 -14.56444 -14.16617 -13.81050 -13.75129 -13.26620 -13.20300 -13.07071 -12.93409 -12.87428 -12.70599 -12.33139 -12.09668 -11.80652 -11.64475 -11.51879 -11.23231 -11.14082 -10.92761 -9.41051 -9.20234 -9.12268 -8.49949 -7.29779 -6.01024 0.49149 1.12277 1.41735 1.50682 1.53440 1.65212 2.20600 2.28274 2.90741 3.00216 3.77717 3.88511 3.95454 4.15647 4.20117 4.27192 4.41551 4.59216 4.66031 4.79438 4.85000 4.90717 5.06239 5.13328 5.24395 5.33454 5.42241 5.49984 5.62942 5.67996 5.80543 5.88888 6.04112 6.06090 6.14814 6.28597 6.57042 6.98228 7.05498 7.12778 7.26572 7.47271 7.67495 8.53105 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.004307 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.697775 B = 6498.800914 C = 7495.284705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.102 4.102 6 C 0.147 3.853 7 N -0.762 5.762 8 C 0.171 3.829 9 C -0.256 4.256 10 C -0.158 4.158 11 C 0.071 3.929 12 N -0.879 5.879 13 C 0.063 3.937 14 C -0.496 4.496 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.837 5.837 18 Si 0.974 3.026 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.258 1.258 22 C -0.222 4.222 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.390 0.610 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.391 0.609 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 8.025 5.809 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.140 4.140 6 C 0.022 3.978 7 N -0.396 5.396 8 C 0.071 3.929 9 C -0.280 4.280 10 C -0.182 4.182 11 C -0.031 4.031 12 N -0.422 5.422 13 C 0.058 3.942 14 C -0.527 4.527 15 H 0.092 0.908 16 C -0.178 4.178 17 N -0.464 5.464 18 Si 0.796 3.204 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.182 1.182 22 C -0.246 4.246 23 H 0.128 0.872 24 H 0.126 0.874 25 H 0.128 0.872 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.223 0.777 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.218 0.782 36 H 0.218 0.782 37 H 0.089 0.911 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.618 8.063 5.893 12.561 hybrid contribution 0.490 -1.169 -0.062 1.269 sum -7.128 6.894 5.831 11.504 Atomic orbital electron populations 1.24572 0.95318 1.02914 0.98322 1.22272 0.96145 0.97322 1.01689 1.22078 0.94635 0.97216 1.01923 1.23311 0.95147 0.98302 0.99041 1.20905 0.98199 0.97284 0.97578 1.21009 0.93334 0.86516 0.96938 1.44432 1.46855 1.15396 1.32909 1.17626 0.91625 0.93916 0.89758 1.19941 1.08348 0.98096 1.01655 1.20072 1.01293 0.96044 1.00831 1.18061 0.97369 0.95311 0.92365 1.41683 1.49190 1.17866 1.33511 1.17345 0.93987 0.92147 0.90725 1.19368 1.03287 0.91327 1.38760 0.90810 1.26548 0.95684 1.03099 0.92423 1.69967 1.12150 1.28413 1.35915 0.85320 0.79038 0.76808 0.79217 1.19455 1.20011 1.18152 1.20368 1.06301 0.95987 1.01988 0.87192 0.87392 0.87172 0.85115 0.85298 0.90170 0.90674 0.94282 0.93183 0.77732 0.87487 0.87007 0.78178 0.78188 0.91107 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 14.43 66.64 0.96 -1.96 16 2 C -0.16 -3.15 9.24 23.43 0.22 -2.93 16 3 C -0.14 -2.70 9.83 23.43 0.23 -2.47 16 4 C -0.14 -2.83 9.59 24.51 0.24 -2.60 16 5 C -0.10 -2.46 5.56 29.85 0.17 -2.29 16 6 C 0.15 4.51 4.89 86.38 0.42 4.94 16 7 N -0.76 -29.68 5.74 -339.42 -1.95 -31.63 16 8 C 0.17 8.18 6.64 38.13 0.25 8.44 16 9 C -0.26 -11.67 9.31 22.56 0.21 -11.46 16 10 C -0.16 -7.20 9.86 22.35 0.22 -6.98 16 11 C 0.07 3.49 6.79 38.97 0.26 3.76 16 12 N -0.88 -35.97 8.98 -50.31 -0.45 -36.43 16 13 C 0.06 3.47 5.53 -21.18 -0.12 3.35 16 14 C -0.50 -26.88 8.40 23.35 0.20 -26.69 16 15 H 0.07 3.80 6.81 -2.91 -0.02 3.78 16 16 C 0.03 1.81 5.13 85.23 0.44 2.25 16 17 N -0.84 -45.56 11.21 21.82 0.24 -45.32 16 18 Si 0.97 39.66 29.59 68.60 2.03 41.69 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 C -0.22 -12.02 8.48 22.81 0.19 -11.82 16 23 H 0.11 1.51 8.05 -2.91 -0.02 1.48 16 24 H 0.11 1.58 8.06 -2.91 -0.02 1.56 16 25 H 0.11 2.35 5.93 -2.91 -0.02 2.33 16 26 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 27 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.07 1.85 5.37 -2.38 -0.01 1.83 16 30 H 0.04 1.27 7.94 -2.38 -0.02 1.25 16 31 H 0.05 1.52 7.94 -2.38 -0.02 1.50 16 32 H 0.39 14.58 8.48 -92.71 -0.79 13.79 16 33 H 0.11 4.32 6.69 -2.91 -0.02 4.30 16 34 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.39 13.16 8.83 -92.71 -0.82 12.34 16 36 H 0.39 15.83 7.10 -92.71 -0.66 15.18 16 37 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 38 H 0.09 5.18 6.48 -2.91 -0.02 5.17 16 Total: -1.00 -62.28 318.81 2.59 -59.69 By element: Atomic # 1 Polarization: 59.64 SS G_CDS: -1.17 Total: 58.46 kcal Atomic # 6 Polarization: -50.36 SS G_CDS: 3.89 Total: -46.47 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -2.15 Total: -113.37 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -62.28 2.59 -59.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713454285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.958 kcal (2) G-P(sol) polarization free energy of solvation -62.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds