Wall clock time and date at job start Mon Mar 30 2020 08:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47261 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.47458 * 59.99745 * 3 2 1 7 7 C 1.37872 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00068 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.98772 * 59.63341 * 9 7 2 11 11 C 1.54097 * 109.87892 * 180.71518 * 9 7 2 12 12 C 1.54812 * 104.18591 * 121.45706 * 11 9 7 13 13 C 1.54997 * 102.09372 * 20.88048 * 12 11 9 14 14 H 1.09011 * 110.75256 * 81.53884 * 13 12 11 15 15 C 1.50699 * 110.62098 * 204.47274 * 13 12 11 16 16 S 1.76200 * 126.03233 * 70.55201 * 15 13 12 17 17 C 1.70978 * 90.29032 * 179.97438 * 16 15 13 18 18 N 1.29052 * 110.18215 * 0.24437 * 17 16 15 19 19 C 1.31811 * 117.11779 * 359.54299 * 18 17 16 20 20 Cl 1.73603 * 122.76053 * 180.19331 * 19 18 17 21 21 O 1.43744 * 109.88105 * 298.55016 * 9 7 2 22 22 H 0.97002 * 119.99898 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.48919 * 240.13423 * 11 9 7 24 24 H 1.08996 * 110.49055 * 2.78470 * 11 9 7 25 25 H 1.09001 * 110.91118 * 262.68361 * 12 11 9 26 26 H 1.08999 * 110.90810 * 139.07730 * 12 11 9 27 27 H 1.08002 * 124.90416 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6160 -2.5635 -0.8818 11 6 2.2440 -3.6774 0.0202 12 6 1.8762 -4.4634 1.3022 13 6 0.4235 -3.9922 1.5665 14 1 -0.2811 -4.5456 0.9457 15 6 0.0741 -4.1414 3.0249 16 16 0.7142 -3.1705 4.3486 17 6 -0.2251 -4.0599 5.4666 18 7 -0.9092 -4.9655 4.8524 19 6 -0.7767 -5.0334 3.5427 20 17 -1.6306 -6.1911 2.5709 21 8 0.4476 -2.5987 1.1895 22 1 -0.4850 0.8401 -0.0004 23 1 2.1103 -4.3029 -0.8624 24 1 3.2691 -3.3116 0.0780 25 1 2.5310 -4.1878 2.1289 26 1 1.9099 -5.5380 1.1228 27 1 -0.2401 -3.8912 6.5333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713477247.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:05 Heat of formation + Delta-G solvation = -6.822803 kcal Electronic energy + Delta-G solvation = -15066.211359 eV Core-core repulsion = 12362.944662 eV Total energy + Delta-G solvation = -2703.266698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63497 -38.12285 -36.35757 -32.86163 -31.29148 -30.84722 -27.84641 -25.59870 -23.90961 -21.45632 -20.24713 -19.94461 -18.01213 -16.99474 -15.78432 -15.14287 -14.72077 -14.44502 -14.35734 -13.87856 -13.72570 -12.78583 -12.34523 -11.81883 -11.61390 -11.57842 -11.16786 -10.98545 -10.86283 -10.66747 -10.47175 -10.15556 -9.98290 -9.55867 -9.30343 -9.03036 -8.64629 -8.54790 -8.12075 -6.06220 -4.19912 0.77786 1.27935 1.72744 2.51584 2.72973 3.26350 3.34695 3.37652 4.37601 4.51545 4.80972 5.16731 5.27205 5.40915 5.54628 5.63014 5.82648 6.08914 6.21611 6.26846 6.54269 6.65505 6.72091 7.45770 7.58323 7.82675 8.14449 8.39657 8.91880 9.51270 11.00943 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.006868 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.439269 B = 4075.840005 C = 4495.010124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.202 3.798 10 H 0.030 0.970 11 C -0.145 4.145 12 C -0.140 4.140 13 C 0.132 3.868 14 H 0.079 0.921 15 C -0.173 4.173 16 S 0.221 5.779 17 C -0.007 4.007 18 N -0.467 5.467 19 C 0.096 3.904 20 Cl -0.014 7.014 21 O -0.340 6.340 22 H 0.261 0.739 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -8.538 7.443 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.083 0.917 9 C 0.147 3.853 10 H 0.048 0.952 11 C -0.183 4.183 12 C -0.179 4.179 13 C 0.071 3.929 14 H 0.096 0.904 15 C -0.297 4.297 16 S 0.474 5.526 17 C -0.304 4.304 18 N -0.183 5.183 19 C -0.063 4.063 20 Cl 0.014 6.986 21 O -0.260 6.260 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.273 -7.879 7.914 11.239 hybrid contribution -0.197 -0.005 -0.520 0.556 sum 1.075 -7.884 7.394 10.862 Atomic orbital electron populations 1.70047 1.06038 1.26598 1.46983 1.25091 0.94762 0.99346 0.93630 0.86582 0.80250 0.83696 0.77729 1.19575 1.20864 1.20783 1.21198 0.92632 0.89858 1.53358 0.91737 1.20375 0.87342 0.92834 0.84737 0.95200 1.23072 1.02125 0.97722 0.95363 1.23131 0.95709 0.99566 0.99488 1.21301 0.96178 0.89784 0.85669 0.90358 1.25800 1.02300 0.99711 1.01871 1.84465 1.40586 1.32577 0.94975 1.28158 1.00150 0.96799 1.05296 1.65725 1.23693 1.21854 1.06983 1.20185 0.99734 0.97596 0.88792 1.98361 1.76226 1.57336 1.66724 1.89373 1.72585 1.17290 1.46729 0.92883 0.92667 0.91021 0.91284 0.91524 0.78031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.13 12.92 55.43 0.72 -24.41 15 2 C 0.08 2.15 5.41 -17.82 -0.10 2.06 15 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.53 -14.45 8.78 -34.44 -0.30 -14.75 15 8 H 0.06 1.69 7.33 -52.49 -0.38 1.31 15 9 C 0.20 5.05 3.26 -27.31 -0.09 4.96 15 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 11 C -0.14 -2.87 6.63 -25.20 -0.17 -3.04 15 12 C -0.14 -2.49 6.58 -24.72 -0.16 -2.65 15 13 C 0.13 2.62 3.68 -26.83 -0.10 2.52 15 14 H 0.08 1.53 7.25 -51.92 -0.38 1.15 15 15 C -0.17 -3.16 5.59 -35.90 -0.20 -3.36 15 16 S 0.22 3.46 23.17 -107.50 -2.49 0.97 15 17 C -0.01 -0.09 12.23 51.59 0.63 0.54 15 18 N -0.47 -7.66 10.55 -12.83 -0.14 -7.79 15 19 C 0.10 1.66 7.30 -19.15 -0.14 1.52 15 20 Cl -0.01 -0.23 28.19 -51.86 -1.46 -1.69 15 21 O -0.34 -8.53 10.33 -35.23 -0.36 -8.90 15 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 23 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.07 1.40 7.40 -51.93 -0.38 1.02 15 25 H 0.07 1.19 8.05 -51.93 -0.42 0.77 15 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 27 H 0.20 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 266.29 15.07 4.01 4.01 Total: -1.00 -30.51 266.29 -7.76 -38.27 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -2.39 Total: -4.09 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.63 Total: -12.21 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.58 Total: -32.21 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.36 Total: -8.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.49 Total: 0.97 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.46 Total: -1.69 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.51 -7.76 -38.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713477247.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.450 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds