Wall clock time and date at job start Mon Mar 30 2020 08:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47261 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.47458 * 59.99745 * 3 2 1 7 7 C 1.37872 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00068 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.98772 * 59.63341 * 9 7 2 11 11 C 1.54097 * 109.87892 * 180.71518 * 9 7 2 12 12 C 1.54812 * 104.18591 * 121.45706 * 11 9 7 13 13 C 1.54997 * 102.09372 * 20.88048 * 12 11 9 14 14 H 1.09011 * 110.75256 * 81.53884 * 13 12 11 15 15 C 1.50699 * 110.62098 * 204.47274 * 13 12 11 16 16 S 1.76200 * 126.03233 * 70.55201 * 15 13 12 17 17 C 1.70978 * 90.29032 * 179.97438 * 16 15 13 18 18 N 1.29052 * 110.18215 * 0.24437 * 17 16 15 19 19 C 1.31811 * 117.11779 * 359.54299 * 18 17 16 20 20 Cl 1.73603 * 122.76053 * 180.19331 * 19 18 17 21 21 O 1.43744 * 109.88105 * 298.55016 * 9 7 2 22 22 H 0.97002 * 119.99898 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.48919 * 240.13423 * 11 9 7 24 24 H 1.08996 * 110.49055 * 2.78470 * 11 9 7 25 25 H 1.09001 * 110.91118 * 262.68361 * 12 11 9 26 26 H 1.08999 * 110.90810 * 139.07730 * 12 11 9 27 27 H 1.08002 * 124.90416 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6160 -2.5635 -0.8818 11 6 2.2440 -3.6774 0.0202 12 6 1.8762 -4.4634 1.3022 13 6 0.4235 -3.9922 1.5665 14 1 -0.2811 -4.5456 0.9457 15 6 0.0741 -4.1414 3.0249 16 16 0.7142 -3.1705 4.3486 17 6 -0.2251 -4.0599 5.4666 18 7 -0.9092 -4.9655 4.8524 19 6 -0.7767 -5.0334 3.5427 20 17 -1.6306 -6.1911 2.5709 21 8 0.4476 -2.5987 1.1895 22 1 -0.4850 0.8401 -0.0004 23 1 2.1103 -4.3029 -0.8624 24 1 3.2691 -3.3116 0.0780 25 1 2.5310 -4.1878 2.1289 26 1 1.9099 -5.5380 1.1228 27 1 -0.2401 -3.8912 6.5333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713477247.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:05 Heat of formation + Delta-G solvation = -26.674017 kcal Electronic energy + Delta-G solvation = -15067.072173 eV Core-core repulsion = 12362.944662 eV Total energy + Delta-G solvation = -2704.127511 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93140 -39.77850 -37.62310 -34.83293 -32.89646 -32.46350 -29.48857 -27.09708 -25.54605 -23.04038 -21.88247 -21.29269 -19.33378 -18.88460 -17.28667 -16.85196 -16.23793 -16.03821 -15.62957 -15.57052 -15.23099 -14.29224 -14.14572 -13.48818 -13.03665 -12.86056 -12.85064 -12.62749 -12.41637 -12.19902 -12.13387 -11.99187 -11.57815 -11.12090 -10.78095 -10.70712 -10.40047 -10.01080 -9.78624 -8.13946 -6.34597 -0.45851 0.02023 0.54897 1.24188 1.41706 1.43323 1.48733 1.55328 2.41915 3.00566 3.35356 3.62327 3.77010 3.89576 4.15537 4.15943 4.50904 4.62028 4.70816 4.74202 4.95852 5.11373 5.17502 5.51951 5.74142 6.16579 6.36659 6.49171 6.92713 7.41466 8.94098 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.006868 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.439269 B = 4075.840005 C = 4495.010124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.194 3.806 10 H -0.006 1.006 11 C -0.137 4.137 12 C -0.128 4.128 13 C 0.129 3.871 14 H 0.075 0.925 15 C -0.210 4.210 16 S 0.216 5.784 17 C 0.029 3.971 18 N -0.491 5.491 19 C 0.098 3.902 20 Cl -0.009 7.009 21 O -0.372 6.372 22 H 0.261 0.739 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -8.975 8.982 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.139 3.861 10 H 0.011 0.989 11 C -0.175 4.175 12 C -0.166 4.166 13 C 0.068 3.932 14 H 0.092 0.908 15 C -0.334 4.334 16 S 0.469 5.531 17 C -0.268 4.268 18 N -0.206 5.206 19 C -0.061 4.061 20 Cl 0.019 6.981 21 O -0.292 6.292 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.341 -8.330 9.444 12.809 hybrid contribution -0.584 0.060 -0.923 1.094 sum 1.757 -8.270 8.522 12.004 Atomic orbital electron populations 1.70192 1.07763 1.27347 1.48743 1.25938 0.95506 1.03040 0.93285 0.85523 0.79394 0.79174 0.77647 1.18310 1.20469 1.20627 1.21612 0.93075 0.91168 1.52731 0.91319 1.20268 0.87777 0.94334 0.83741 0.98863 1.22952 1.00672 0.96374 0.97494 1.23086 0.94182 1.01019 0.98355 1.21367 0.97523 0.87246 0.87041 0.90789 1.25613 1.04448 1.01692 1.01600 1.84456 1.41110 1.32721 0.94772 1.28995 0.96993 0.94016 1.06762 1.65829 1.25037 1.23271 1.06466 1.20360 0.99009 0.97296 0.89406 1.98358 1.75995 1.56994 1.66720 1.89270 1.72834 1.20757 1.46361 0.93014 0.90731 0.90737 0.90785 0.88401 0.73242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.17 12.92 21.45 0.28 -53.90 15 2 C 0.02 1.36 5.41 84.65 0.46 1.82 15 3 Si 0.96 43.09 29.54 68.60 2.03 45.12 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 7 C -0.55 -30.11 8.78 25.60 0.22 -29.89 15 8 H 0.07 3.60 7.33 -2.91 -0.02 3.58 15 9 C 0.19 9.92 3.26 30.22 0.10 10.02 15 10 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 11 C -0.14 -5.33 6.63 31.58 0.21 -5.12 15 12 C -0.13 -4.36 6.58 31.90 0.21 -4.15 15 13 C 0.13 5.10 3.68 30.53 0.11 5.22 15 14 H 0.07 2.92 7.25 -2.38 -0.02 2.90 15 15 C -0.21 -7.48 5.59 24.66 0.14 -7.34 15 16 S 0.22 6.40 23.17 -56.49 -1.31 5.09 15 17 C 0.03 0.69 12.23 130.65 1.60 2.29 15 18 N -0.49 -14.92 10.55 -194.50 -2.05 -16.97 15 19 C 0.10 3.29 7.30 83.67 0.61 3.90 15 20 Cl -0.01 -0.27 28.19 -2.72 -0.08 -0.34 15 21 O -0.37 -19.08 10.33 -148.98 -1.54 -20.62 15 22 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 23 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.07 2.83 7.40 -2.39 -0.02 2.81 15 25 H 0.07 2.43 8.05 -2.39 -0.02 2.41 15 26 H 0.10 2.70 8.14 -2.39 -0.02 2.69 15 27 H 0.25 3.26 8.06 -2.91 -0.02 3.23 15 Total: -1.00 -66.89 266.29 2.18 -64.71 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: 1.19 Total: 0.17 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.66 Total: -23.25 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -1.77 Total: -70.86 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.54 Total: -20.62 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.31 Total: 5.09 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.34 kcal Total: -66.89 2.18 -64.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713477247.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.033 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds