Wall clock time and date at job start Mon Mar 30 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47199 * 240.00115 * 3 2 1 5 5 H 1.48502 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47213 * 119.99976 * 3 2 1 7 7 C 1.39886 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00554 * 195.20549 * 7 2 1 9 9 C 1.41031 * 119.99553 * 14.92341 * 7 2 1 10 10 C 1.40671 * 120.26518 * 25.88090 * 9 7 2 11 11 C 1.38003 * 119.76720 * 179.97438 * 10 9 7 12 12 N 1.39852 * 119.84091 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00314 * 179.97438 * 12 11 10 14 14 H 1.09003 * 115.54904 * 9.41895 * 13 12 11 15 15 C 1.53003 * 117.49952 * 223.74649 * 13 12 11 16 16 C 1.53002 * 117.50008 * 155.08547 * 13 12 11 17 17 H 1.09004 * 117.49470 * 0.02562 * 16 13 12 18 18 C 1.52992 * 117.49865 * 214.98123 * 16 13 12 19 19 C 1.53002 * 117.50012 * 128.62342 * 18 16 13 20 20 C 1.52995 * 117.50170 * 60.00024 * 18 16 13 21 21 C 1.39604 * 120.32208 * 0.02562 * 11 10 9 22 22 C 1.38053 * 120.55197 * 359.95961 * 21 11 10 23 23 C 1.38744 * 120.21807 * 359.78365 * 22 21 11 24 24 N 1.38864 * 120.16220 * 180.25940 * 23 22 21 25 25 H 0.96994 * 119.99944 * 0.02562 * 1 2 3 26 26 H 1.07991 * 120.11443 * 359.97438 * 10 9 7 27 27 H 0.97003 * 119.99620 * 359.97438 * 12 11 10 28 28 H 1.09002 * 117.49510 * 0.02562 * 15 13 12 29 29 H 1.09001 * 117.49744 * 144.99607 * 15 13 12 30 30 H 1.08998 * 115.54894 * 274.32705 * 18 16 13 31 31 H 1.09003 * 117.49572 * 359.97438 * 19 18 16 32 32 H 1.09000 * 117.50330 * 145.01440 * 19 18 16 33 33 H 1.09002 * 117.50328 * 214.97846 * 20 18 16 34 34 H 1.09002 * 117.49679 * 0.02562 * 20 18 16 35 35 H 1.08002 * 119.72521 * 179.97438 * 21 11 10 36 36 H 1.07996 * 119.89492 * 180.02562 * 22 21 11 37 37 H 0.97000 * 119.99824 * 180.23254 * 24 23 22 38 38 H 0.96991 * 120.00339 * 0.23173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0085 -1.2114 -0.0005 8 1 3.0602 -1.2279 0.2448 9 6 1.3390 -2.4120 -0.3156 10 6 0.1901 -2.3912 -1.1269 11 6 -0.4567 -3.5723 -1.4292 12 7 -1.5994 -3.5533 -2.2352 13 6 -2.2885 -4.8050 -2.5589 14 1 -1.9497 -5.6837 -2.0098 15 6 -2.7427 -5.0078 -4.0058 16 6 -3.7749 -4.7224 -2.9119 17 1 -4.2400 -3.7366 -2.9039 18 6 -4.6718 -5.8795 -2.4679 19 6 -5.9452 -5.5300 -1.6951 20 6 -4.7604 -6.1695 -0.9683 21 6 0.0236 -4.7857 -0.9335 22 6 1.1502 -4.8215 -0.1364 23 6 1.8211 -3.6483 0.1774 24 7 2.9573 -3.6863 0.9748 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1846 -1.4544 -1.5118 27 1 -1.9358 -2.7113 -2.5800 28 1 -2.5285 -4.2100 -4.7169 29 1 -2.7028 -6.0198 -4.4087 30 1 -4.7132 -6.7301 -3.1483 31 1 -6.1437 -4.4757 -1.5026 32 1 -6.8247 -6.1506 -1.8670 33 1 -4.8604 -7.2109 -0.6621 34 1 -4.1800 -5.5356 -0.2980 35 1 -0.4903 -5.7042 -1.1758 36 1 1.5127 -5.7662 0.2410 37 1 3.4226 -2.8642 1.1955 38 1 3.2857 -4.5347 1.3112 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716986131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:39 Heat of formation + Delta-G solvation = 72.484321 kcal Electronic energy + Delta-G solvation = -18461.637691 eV Core-core repulsion = 15690.874838 eV Total energy + Delta-G solvation = -2770.762853 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -38.73019 -37.64414 -35.69019 -33.61626 -33.42269 -30.65619 -29.41056 -26.24964 -24.79010 -23.56327 -22.41607 -21.86172 -20.86987 -19.66985 -19.53513 -17.16123 -16.18157 -15.69525 -15.47403 -15.23553 -14.76423 -14.66595 -14.08149 -13.14516 -12.61876 -12.52885 -12.27993 -12.13566 -11.80423 -11.58972 -11.40866 -11.28483 -11.21400 -11.00612 -10.94712 -10.67697 -10.38855 -10.24810 -9.93514 -9.59604 -9.32291 -9.24933 -9.06036 -7.65711 -7.23047 -6.60941 -5.54298 -4.07156 2.91718 3.12356 3.15170 3.31016 3.41023 3.76215 4.03004 4.18910 4.32461 4.78593 4.87267 4.96672 5.08023 5.27197 5.39001 5.42538 5.52329 5.59274 5.68688 5.90734 5.94899 5.99149 6.15628 6.21990 6.31607 6.36824 6.39850 6.66078 7.11057 7.14641 7.31936 7.46708 7.70478 7.86937 7.98597 8.11498 8.44970 8.73068 8.87695 8.92698 8.99084 9.25350 9.33212 10.37351 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.005038 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.046465 B = 5556.802962 C = 6235.650888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.464 4.464 8 H 0.071 0.929 9 C 0.095 3.905 10 C -0.199 4.199 11 C 0.175 3.825 12 N -0.729 5.729 13 C 0.128 3.872 14 H 0.125 0.875 15 C -0.204 4.204 16 C -0.150 4.150 17 H 0.101 0.899 18 C -0.117 4.117 19 C -0.180 4.180 20 C -0.177 4.177 21 C -0.253 4.253 22 C -0.152 4.152 23 C 0.085 3.915 24 N -0.889 5.889 25 H 0.275 0.725 26 H 0.120 0.880 27 H 0.389 0.611 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.388 0.612 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 -6.819 -3.497 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.090 3.910 10 C -0.223 4.223 11 C 0.078 3.922 12 N -0.359 5.359 13 C 0.019 3.981 14 H 0.142 0.858 15 C -0.244 4.244 16 C -0.170 4.170 17 H 0.119 0.881 18 C -0.136 4.136 19 C -0.217 4.217 20 C -0.214 4.214 21 C -0.277 4.277 22 C -0.177 4.177 23 C -0.015 4.015 24 N -0.431 5.431 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.223 0.777 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.217 0.783 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.322 -6.782 -3.498 9.909 hybrid contribution 0.339 1.087 0.059 1.140 sum -5.983 -5.695 -3.439 8.947 Atomic orbital electron populations 1.69861 1.07246 1.28463 1.37252 1.25746 0.94679 1.00685 0.92856 0.86470 0.80086 0.80993 0.79640 1.19152 1.20609 1.19337 1.19112 0.96531 0.91013 1.42824 0.91118 1.16959 0.92600 0.90291 0.91163 1.20526 1.00976 0.95091 1.05743 1.17493 0.87218 0.94275 0.93249 1.43822 1.29485 1.05281 1.57362 1.21393 0.90749 0.90865 0.95137 0.85765 1.23607 1.04480 1.02313 0.93953 1.22293 0.91823 0.98078 1.04844 0.88133 1.21676 0.98596 0.98988 0.94310 1.22951 0.92073 1.01592 1.05097 1.22990 1.01974 1.01463 0.94965 1.19650 1.02324 0.94514 1.11195 1.19708 0.98591 0.94666 1.04693 1.17868 0.91488 0.93940 0.98253 1.41809 1.31583 1.09196 1.60541 0.91396 0.86265 0.77740 0.89109 0.88992 0.88025 0.88912 0.89216 0.89116 0.88254 0.89503 0.89703 0.78343 0.80088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.00 10.87 55.54 0.60 -20.40 16 2 C 0.08 1.93 5.19 -17.33 -0.09 1.84 16 3 Si 0.90 18.97 29.59 -169.99 -5.03 13.94 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -12.19 8.50 -37.91 -0.32 -12.51 16 8 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 9 C 0.10 2.53 5.58 -106.65 -0.60 1.93 16 10 C -0.20 -5.19 8.50 -38.75 -0.33 -5.52 16 11 C 0.18 4.10 6.64 -83.78 -0.56 3.55 16 12 N -0.73 -14.25 5.75 -52.17 -0.30 -14.55 16 13 C 0.13 2.08 5.96 -67.93 -0.41 1.67 16 14 H 0.12 2.08 5.88 -51.93 -0.31 1.77 16 15 C -0.20 -2.78 10.18 -26.69 -0.27 -3.05 16 16 C -0.15 -2.05 5.80 -90.58 -0.52 -2.58 16 17 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 18 C -0.12 -1.41 5.87 -90.62 -0.53 -1.94 16 19 C -0.18 -1.99 10.25 -26.73 -0.27 -2.27 16 20 C -0.18 -2.13 10.18 -26.73 -0.27 -2.40 16 21 C -0.25 -5.76 9.32 -39.14 -0.36 -6.13 16 22 C -0.15 -3.50 9.86 -39.46 -0.39 -3.89 16 23 C 0.09 2.07 6.79 -83.22 -0.56 1.51 16 24 N -0.89 -18.21 8.98 32.75 0.29 -17.92 16 25 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 26 H 0.12 3.23 6.15 -52.49 -0.32 2.90 16 27 H 0.39 7.33 8.83 -40.82 -0.36 6.97 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.09 1.78 5.86 -52.49 -0.31 1.47 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.39 7.81 7.04 -40.82 -0.29 7.52 16 38 H 0.37 6.48 8.83 -40.82 -0.36 6.12 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -27.75 315.87 -10.40 -38.15 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -5.23 Total: 25.80 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -5.49 Total: -29.78 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.60 Total: -52.87 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.75 -10.40 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716986131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.635 kcal (2) G-P(sol) polarization free energy of solvation -27.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds