Wall clock time and date at job start Mon Mar 30 2020 07:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47199 * 240.00115 * 3 2 1 5 5 H 1.48502 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47213 * 119.99976 * 3 2 1 7 7 C 1.39886 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00554 * 195.20549 * 7 2 1 9 9 C 1.41031 * 119.99553 * 14.92341 * 7 2 1 10 10 C 1.40671 * 120.26518 * 25.88090 * 9 7 2 11 11 C 1.38003 * 119.76720 * 179.97438 * 10 9 7 12 12 N 1.39852 * 119.84091 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00314 * 179.97438 * 12 11 10 14 14 H 1.09003 * 115.54904 * 9.41895 * 13 12 11 15 15 C 1.53003 * 117.49952 * 223.74649 * 13 12 11 16 16 C 1.53002 * 117.50008 * 155.08547 * 13 12 11 17 17 H 1.09004 * 117.49470 * 0.02562 * 16 13 12 18 18 C 1.52992 * 117.49865 * 214.98123 * 16 13 12 19 19 C 1.53002 * 117.50012 * 128.62342 * 18 16 13 20 20 C 1.52995 * 117.50170 * 60.00024 * 18 16 13 21 21 C 1.39604 * 120.32208 * 0.02562 * 11 10 9 22 22 C 1.38053 * 120.55197 * 359.95961 * 21 11 10 23 23 C 1.38744 * 120.21807 * 359.78365 * 22 21 11 24 24 N 1.38864 * 120.16220 * 180.25940 * 23 22 21 25 25 H 0.96994 * 119.99944 * 0.02562 * 1 2 3 26 26 H 1.07991 * 120.11443 * 359.97438 * 10 9 7 27 27 H 0.97003 * 119.99620 * 359.97438 * 12 11 10 28 28 H 1.09002 * 117.49510 * 0.02562 * 15 13 12 29 29 H 1.09001 * 117.49744 * 144.99607 * 15 13 12 30 30 H 1.08998 * 115.54894 * 274.32705 * 18 16 13 31 31 H 1.09003 * 117.49572 * 359.97438 * 19 18 16 32 32 H 1.09000 * 117.50330 * 145.01440 * 19 18 16 33 33 H 1.09002 * 117.50328 * 214.97846 * 20 18 16 34 34 H 1.09002 * 117.49679 * 0.02562 * 20 18 16 35 35 H 1.08002 * 119.72521 * 179.97438 * 21 11 10 36 36 H 1.07996 * 119.89492 * 180.02562 * 22 21 11 37 37 H 0.97000 * 119.99824 * 180.23254 * 24 23 22 38 38 H 0.96991 * 120.00339 * 0.23173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0085 -1.2114 -0.0005 8 1 3.0602 -1.2279 0.2448 9 6 1.3390 -2.4120 -0.3156 10 6 0.1901 -2.3912 -1.1269 11 6 -0.4567 -3.5723 -1.4292 12 7 -1.5994 -3.5533 -2.2352 13 6 -2.2885 -4.8050 -2.5589 14 1 -1.9497 -5.6837 -2.0098 15 6 -2.7427 -5.0078 -4.0058 16 6 -3.7749 -4.7224 -2.9119 17 1 -4.2400 -3.7366 -2.9039 18 6 -4.6718 -5.8795 -2.4679 19 6 -5.9452 -5.5300 -1.6951 20 6 -4.7604 -6.1695 -0.9683 21 6 0.0236 -4.7857 -0.9335 22 6 1.1502 -4.8215 -0.1364 23 6 1.8211 -3.6483 0.1774 24 7 2.9573 -3.6863 0.9748 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1846 -1.4544 -1.5118 27 1 -1.9358 -2.7113 -2.5800 28 1 -2.5285 -4.2100 -4.7169 29 1 -2.7028 -6.0198 -4.4087 30 1 -4.7132 -6.7301 -3.1483 31 1 -6.1437 -4.4757 -1.5026 32 1 -6.8247 -6.1506 -1.8670 33 1 -4.8604 -7.2109 -0.6621 34 1 -4.1800 -5.5356 -0.2980 35 1 -0.4903 -5.7042 -1.1758 36 1 1.5127 -5.7662 0.2410 37 1 3.4226 -2.8642 1.1955 38 1 3.2857 -4.5347 1.3112 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716986131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:36 Heat of formation + Delta-G solvation = 57.323411 kcal Electronic energy + Delta-G solvation = -18462.295117 eV Core-core repulsion = 15690.874838 eV Total energy + Delta-G solvation = -2771.420279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09322 -39.19259 -36.96345 -35.37564 -35.04533 -32.25617 -31.30365 -28.02890 -26.61413 -24.65319 -23.61272 -23.15894 -22.42709 -21.29749 -20.75687 -18.95773 -17.84379 -17.33434 -16.91470 -16.58167 -16.32505 -16.19121 -15.32221 -14.61754 -14.24675 -14.15320 -13.96881 -13.66554 -13.37771 -13.10756 -12.95548 -12.70291 -12.63149 -12.36111 -12.23093 -12.07882 -11.88282 -11.63751 -11.41202 -11.15387 -10.93633 -10.81011 -10.52185 -9.26002 -9.11675 -8.49331 -7.29093 -6.00776 1.12738 1.40825 1.49721 1.52110 1.63573 2.26926 2.65078 2.86763 2.93734 3.20218 3.76536 3.79117 3.93571 3.97094 4.08209 4.18855 4.26707 4.45916 4.56315 4.62170 4.79231 4.82010 4.91085 5.03127 5.05462 5.22851 5.28011 5.30198 5.34872 5.37136 5.45153 5.65596 5.89706 6.06134 6.16197 6.28241 6.56445 6.96200 7.05679 7.12442 7.22133 7.46621 7.67258 8.50692 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.005038 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.046465 B = 5556.802962 C = 6235.650888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.493 4.493 8 H 0.075 0.925 9 C 0.060 3.940 10 C -0.226 4.226 11 C 0.173 3.827 12 N -0.729 5.729 13 C 0.097 3.903 14 H 0.120 0.880 15 C -0.184 4.184 16 C -0.136 4.136 17 H 0.094 0.906 18 C -0.121 4.121 19 C -0.171 4.171 20 C -0.185 4.185 21 C -0.256 4.256 22 C -0.157 4.157 23 C 0.070 3.930 24 N -0.879 5.879 25 H 0.279 0.721 26 H 0.099 0.901 27 H 0.389 0.611 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.390 0.610 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 -8.055 -4.028 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.093 0.907 9 C 0.055 3.945 10 C -0.251 4.251 11 C 0.073 3.927 12 N -0.359 5.359 13 C -0.011 4.011 14 H 0.138 0.862 15 C -0.223 4.223 16 C -0.156 4.156 17 H 0.112 0.888 18 C -0.139 4.139 19 C -0.208 4.208 20 C -0.222 4.222 21 C -0.280 4.280 22 C -0.181 4.181 23 C -0.032 4.032 24 N -0.423 5.423 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.222 0.778 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.218 0.782 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.864 -8.058 -4.033 11.328 hybrid contribution 0.426 1.358 0.199 1.437 sum -6.438 -6.700 -3.834 10.052 Atomic orbital electron populations 1.69957 1.08730 1.29424 1.38172 1.26575 0.95412 1.03926 0.92058 0.85363 0.78672 0.76497 0.79744 1.18977 1.20015 1.18421 1.19393 0.96913 0.91924 1.44135 0.90689 1.17351 0.93429 0.91610 0.92079 1.20497 1.02085 0.95280 1.07195 1.17591 0.87997 0.93792 0.93270 1.43846 1.28693 1.06685 1.56707 1.21555 0.92648 0.89282 0.97590 0.86216 1.23642 1.02659 1.03573 0.92421 1.22287 0.90649 0.98711 1.03927 0.88778 1.21750 0.98765 0.98878 0.94519 1.23035 0.92432 1.01597 1.03739 1.22973 1.02510 1.02109 0.94581 1.19983 1.02329 0.95096 1.10598 1.20066 0.98380 0.95409 1.04266 1.18043 0.92642 0.93706 0.98857 1.41678 1.30532 1.10216 1.59829 0.91100 0.88356 0.77816 0.89149 0.86740 0.86036 0.89640 0.86914 0.87381 0.90789 0.87196 0.86946 0.78215 0.78160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.31 10.87 21.82 0.24 -45.08 16 2 C 0.03 1.69 5.19 85.23 0.44 2.14 16 3 Si 0.98 39.50 29.59 68.60 2.03 41.53 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.49 -26.60 8.50 23.35 0.20 -26.40 16 8 H 0.08 3.81 6.67 -2.91 -0.02 3.80 16 9 C 0.06 3.31 5.58 -21.18 -0.12 3.20 16 10 C -0.23 -12.25 8.50 22.81 0.19 -12.06 16 11 C 0.17 8.26 6.64 38.14 0.25 8.52 16 12 N -0.73 -28.89 5.75 -318.96 -1.83 -30.73 16 13 C 0.10 3.05 5.96 44.99 0.27 3.32 16 14 H 0.12 3.86 5.88 -2.39 -0.01 3.85 16 15 C -0.18 -4.61 10.18 30.62 0.31 -4.30 16 16 C -0.14 -3.50 5.80 -10.77 -0.06 -3.56 16 17 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 18 C -0.12 -2.59 5.87 -10.80 -0.06 -2.66 16 19 C -0.17 -3.39 10.25 30.59 0.31 -3.08 16 20 C -0.18 -4.13 10.18 30.59 0.31 -3.82 16 21 C -0.26 -11.55 9.32 22.56 0.21 -11.34 16 22 C -0.16 -7.08 9.86 22.35 0.22 -6.86 16 23 C 0.07 3.40 6.79 38.97 0.26 3.66 16 24 N -0.88 -35.59 8.98 -50.31 -0.45 -36.05 16 25 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 26 H 0.10 5.63 6.15 -2.92 -0.02 5.62 16 27 H 0.39 15.12 8.83 -92.71 -0.82 14.30 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.11 4.35 5.86 -2.91 -0.02 4.34 16 36 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 37 H 0.39 15.63 7.04 -92.71 -0.65 14.98 16 38 H 0.39 13.01 8.83 -92.71 -0.82 12.19 16 Total: -1.00 -60.95 315.87 1.54 -59.41 By element: Atomic # 1 Polarization: 65.33 SS G_CDS: -1.19 Total: 64.15 kcal Atomic # 6 Polarization: -55.99 SS G_CDS: 2.74 Total: -53.24 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -2.05 Total: -111.85 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -60.95 1.54 -59.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716986131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.738 kcal (2) G-P(sol) polarization free energy of solvation -60.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds