Wall clock time and date at job start Mon Mar 30 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86805 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47192 * 269.99915 * 3 2 1 5 5 H 1.48504 * 109.47264 * 149.99939 * 3 2 1 6 6 H 1.48498 * 109.46885 * 29.99743 * 3 2 1 7 7 C 1.39885 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00133 * 154.86794 * 7 2 1 9 9 C 1.41033 * 119.99734 * 334.87190 * 7 2 1 10 10 C 1.40667 * 120.26350 * 333.58650 * 9 7 2 11 11 C 1.38013 * 119.76582 * 179.70052 * 10 9 7 12 12 N 1.39854 * 119.83901 * 180.29966 * 11 10 9 13 13 C 1.46496 * 119.99753 * 180.30127 * 12 11 10 14 14 H 1.09001 * 115.55030 * 350.58054 * 13 12 11 15 15 C 1.53001 * 117.49646 * 136.24936 * 13 12 11 16 16 C 1.53000 * 117.49949 * 204.91003 * 13 12 11 17 17 H 1.08993 * 117.50085 * 145.01988 * 16 13 12 18 18 C 1.52998 * 117.49804 * 359.97438 * 16 13 12 19 19 C 1.53001 * 117.49827 * 128.74763 * 18 16 13 20 20 C 1.52998 * 117.49719 * 60.08645 * 18 16 13 21 21 C 1.39596 * 120.31928 * 0.59979 * 11 10 9 22 22 C 1.38059 * 120.55035 * 359.67378 * 21 11 10 23 23 C 1.38738 * 120.22071 * 0.02562 * 22 21 11 24 24 N 1.38867 * 120.16328 * 179.97438 * 23 22 21 25 25 H 0.96999 * 120.00060 * 174.23952 * 1 2 3 26 26 H 1.08001 * 120.11837 * 359.97438 * 10 9 7 27 27 H 0.96994 * 119.99791 * 0.30007 * 12 11 10 28 28 H 1.09002 * 117.50066 * 214.97692 * 15 13 12 29 29 H 1.09000 * 117.50110 * 359.97438 * 15 13 12 30 30 H 1.09003 * 115.55492 * 274.42252 * 18 16 13 31 31 H 1.08997 * 117.50059 * 359.97438 * 19 18 16 32 32 H 1.08998 * 117.50112 * 145.02684 * 19 18 16 33 33 H 1.08999 * 117.50030 * 214.97900 * 20 18 16 34 34 H 1.09000 * 117.49920 * 359.97438 * 20 18 16 35 35 H 1.07998 * 119.73022 * 179.69665 * 21 11 10 36 36 H 1.08008 * 119.89157 * 179.97438 * 22 21 11 37 37 H 0.97000 * 119.99794 * 180.02562 * 24 23 22 38 38 H 0.97002 * 120.00237 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 3.5407 1.4402 0.7001 6 1 1.4405 2.6527 0.7000 7 6 2.0085 -1.2114 0.0005 8 1 3.0117 -1.2559 -0.3966 9 6 1.4034 -2.3748 0.5197 10 6 0.4002 -2.2746 1.5007 11 6 -0.1893 -3.4195 1.9972 12 7 -1.1913 -3.3214 2.9680 13 6 -1.8148 -4.5346 3.5022 14 1 -1.5623 -5.4600 2.9844 15 6 -2.0348 -4.6087 5.0145 16 6 -3.2275 -4.4090 4.0760 17 1 -3.9044 -5.2517 3.9360 18 6 -3.8807 -3.0257 4.0485 19 6 -5.2841 -2.9189 3.4485 20 6 -4.0798 -2.3655 2.6827 21 6 0.2139 -4.6751 1.5396 22 6 1.2012 -4.7889 0.5812 23 6 1.8048 -3.6527 0.0621 24 7 2.7981 -3.7686 -0.9014 25 1 -0.4850 -0.8358 -0.0843 26 1 0.0894 -1.3051 1.8610 27 1 -1.4732 -2.4501 3.2876 28 1 -1.9276 -5.5828 5.4916 29 1 -1.7153 -3.7549 5.6120 30 1 -3.6429 -2.3766 4.8913 31 1 -5.7419 -3.8340 3.0730 32 1 -5.9695 -2.1994 3.8963 33 1 -3.9734 -1.2821 2.6271 34 1 -3.7450 -2.9165 1.8038 35 1 -0.2505 -5.5650 1.9382 36 1 1.5053 -5.7658 0.2351 37 1 3.2187 -2.9726 -1.2625 38 1 3.0713 -4.6455 -1.2134 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716986137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:45 Heat of formation + Delta-G solvation = 66.995814 kcal Electronic energy + Delta-G solvation = -18815.444615 eV Core-core repulsion = 16044.443762 eV Total energy + Delta-G solvation = -2771.000852 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.90847 -37.74809 -35.50713 -33.78954 -33.61412 -30.74584 -29.15302 -26.24040 -24.70869 -23.66826 -22.18689 -22.04002 -20.84901 -20.16668 -19.16793 -17.62479 -16.15401 -15.86907 -15.43865 -15.33456 -14.70507 -14.15209 -13.91956 -13.57739 -12.98583 -12.54333 -12.40330 -12.04135 -11.84704 -11.75716 -11.44591 -11.23808 -11.15825 -10.97650 -10.65208 -10.59599 -10.35433 -10.23366 -10.02599 -9.57921 -9.30219 -9.28146 -8.83242 -7.72651 -7.43883 -7.07946 -5.67065 -4.11724 2.90714 3.21396 3.22970 3.37888 3.41244 3.85170 4.11996 4.15477 4.25965 4.74543 4.85536 5.01858 5.11062 5.26805 5.34658 5.38815 5.52312 5.60618 5.74105 5.76217 5.93640 6.08263 6.15529 6.24245 6.25748 6.33076 6.43211 6.55521 6.99100 7.02027 7.31031 7.51551 7.69764 7.76373 7.87705 8.08227 8.27740 8.59374 8.65558 8.80703 8.98921 9.17907 9.22898 10.24884 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.006330 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.596537 B = 4422.436674 C = 5523.082315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.041 3.959 3 Si 1.062 2.938 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.090 3.910 10 C -0.258 4.258 11 C 0.197 3.803 12 N -0.722 5.722 13 C 0.123 3.877 14 H 0.124 0.876 15 C -0.204 4.204 16 C -0.149 4.149 17 H 0.103 0.897 18 C -0.122 4.122 19 C -0.182 4.182 20 C -0.166 4.166 21 C -0.268 4.268 22 C -0.143 4.143 23 C 0.081 3.919 24 N -0.888 5.888 25 H 0.299 0.701 26 H 0.104 0.896 27 H 0.391 0.609 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.389 0.611 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -4.609 5.078 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.180 4.180 3 Si 0.887 3.113 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.087 0.913 9 C 0.084 3.916 10 C -0.283 4.283 11 C 0.099 3.901 12 N -0.353 5.353 13 C 0.014 3.986 14 H 0.141 0.859 15 C -0.244 4.244 16 C -0.169 4.169 17 H 0.121 0.879 18 C -0.140 4.140 19 C -0.219 4.219 20 C -0.203 4.203 21 C -0.292 4.292 22 C -0.168 4.168 23 C -0.020 4.020 24 N -0.430 5.430 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.226 0.774 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.217 0.783 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.193 -3.082 5.181 7.956 hybrid contribution 0.222 -1.479 -0.066 1.497 sum -4.970 -4.561 5.115 8.466 Atomic orbital electron populations 1.70415 1.08091 1.34261 1.30382 1.26763 0.95742 1.03721 0.91755 0.83704 0.75748 0.74290 0.77587 1.20638 1.20342 1.20121 1.20108 1.02494 0.94282 1.38932 0.91326 1.17044 0.92479 0.90717 0.91337 1.20272 1.07516 0.95361 1.05117 1.17378 0.89127 0.93938 0.89697 1.43786 1.41442 1.05079 1.44963 1.21363 0.93366 0.91596 0.92282 0.85863 1.23564 1.02755 1.02645 0.95422 1.22283 0.91530 0.96446 1.06618 0.87925 1.21573 0.98621 0.96464 0.97382 1.22951 0.90903 1.02988 1.05033 1.22967 1.01183 1.00496 0.95621 1.19581 1.07253 0.93875 1.08459 1.19740 1.00815 0.94788 1.01420 1.17791 0.95624 0.93545 0.95024 1.41802 1.44906 1.08392 1.47938 0.88708 0.87830 0.77437 0.88966 0.89079 0.88285 0.89153 0.89283 0.88898 0.88234 0.89397 0.89650 0.78289 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.60 12.35 55.54 0.69 -20.91 16 2 C 0.04 1.04 4.93 -17.33 -0.09 0.96 16 3 Si 1.06 21.99 30.00 -169.99 -5.10 16.89 16 4 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.53 -13.90 8.41 -37.91 -0.32 -14.22 16 8 H 0.07 1.74 6.76 -52.49 -0.35 1.38 16 9 C 0.09 2.36 5.29 -106.66 -0.56 1.80 16 10 C -0.26 -6.58 7.76 -38.75 -0.30 -6.88 16 11 C 0.20 4.50 6.64 -83.77 -0.56 3.94 16 12 N -0.72 -13.68 5.08 -52.17 -0.27 -13.94 16 13 C 0.12 1.95 6.25 -67.93 -0.42 1.52 16 14 H 0.12 1.96 5.88 -51.93 -0.31 1.66 16 15 C -0.20 -2.73 10.18 -26.69 -0.27 -3.01 16 16 C -0.15 -1.98 5.87 -90.58 -0.53 -2.51 16 17 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.12 -1.61 5.02 -90.62 -0.45 -2.07 16 19 C -0.18 -2.18 10.26 -26.69 -0.27 -2.46 16 20 C -0.17 -2.37 9.11 -26.69 -0.24 -2.61 16 21 C -0.27 -5.99 9.32 -39.14 -0.36 -6.36 16 22 C -0.14 -3.25 9.86 -39.46 -0.39 -3.64 16 23 C 0.08 1.96 6.79 -83.23 -0.56 1.39 16 24 N -0.89 -18.26 8.98 32.75 0.29 -17.97 16 25 H 0.30 8.29 6.71 -40.82 -0.27 8.02 16 26 H 0.10 2.76 6.55 -52.49 -0.34 2.41 16 27 H 0.39 7.31 7.42 -40.82 -0.30 7.01 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.09 1.76 5.86 -52.49 -0.31 1.46 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.39 7.90 7.05 -40.82 -0.29 7.61 16 38 H 0.37 6.51 8.83 -40.82 -0.36 6.15 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -27.42 311.68 -10.17 -37.59 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -5.14 Total: 27.80 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -5.34 Total: -34.14 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.71 Total: -52.82 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.10 Total: 16.89 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.42 -10.17 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716986137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.581 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds