Wall clock time and date at job start Mon Mar 30 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86805 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47192 * 269.99915 * 3 2 1 5 5 H 1.48504 * 109.47264 * 149.99939 * 3 2 1 6 6 H 1.48498 * 109.46885 * 29.99743 * 3 2 1 7 7 C 1.39885 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00133 * 154.86794 * 7 2 1 9 9 C 1.41033 * 119.99734 * 334.87190 * 7 2 1 10 10 C 1.40667 * 120.26350 * 333.58650 * 9 7 2 11 11 C 1.38013 * 119.76582 * 179.70052 * 10 9 7 12 12 N 1.39854 * 119.83901 * 180.29966 * 11 10 9 13 13 C 1.46496 * 119.99753 * 180.30127 * 12 11 10 14 14 H 1.09001 * 115.55030 * 350.58054 * 13 12 11 15 15 C 1.53001 * 117.49646 * 136.24936 * 13 12 11 16 16 C 1.53000 * 117.49949 * 204.91003 * 13 12 11 17 17 H 1.08993 * 117.50085 * 145.01988 * 16 13 12 18 18 C 1.52998 * 117.49804 * 359.97438 * 16 13 12 19 19 C 1.53001 * 117.49827 * 128.74763 * 18 16 13 20 20 C 1.52998 * 117.49719 * 60.08645 * 18 16 13 21 21 C 1.39596 * 120.31928 * 0.59979 * 11 10 9 22 22 C 1.38059 * 120.55035 * 359.67378 * 21 11 10 23 23 C 1.38738 * 120.22071 * 0.02562 * 22 21 11 24 24 N 1.38867 * 120.16328 * 179.97438 * 23 22 21 25 25 H 0.96999 * 120.00060 * 174.23952 * 1 2 3 26 26 H 1.08001 * 120.11837 * 359.97438 * 10 9 7 27 27 H 0.96994 * 119.99791 * 0.30007 * 12 11 10 28 28 H 1.09002 * 117.50066 * 214.97692 * 15 13 12 29 29 H 1.09000 * 117.50110 * 359.97438 * 15 13 12 30 30 H 1.09003 * 115.55492 * 274.42252 * 18 16 13 31 31 H 1.08997 * 117.50059 * 359.97438 * 19 18 16 32 32 H 1.08998 * 117.50112 * 145.02684 * 19 18 16 33 33 H 1.08999 * 117.50030 * 214.97900 * 20 18 16 34 34 H 1.09000 * 117.49920 * 359.97438 * 20 18 16 35 35 H 1.07998 * 119.73022 * 179.69665 * 21 11 10 36 36 H 1.08008 * 119.89157 * 179.97438 * 22 21 11 37 37 H 0.97000 * 119.99794 * 180.02562 * 24 23 22 38 38 H 0.97002 * 120.00237 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 3.5407 1.4402 0.7001 6 1 1.4405 2.6527 0.7000 7 6 2.0085 -1.2114 0.0005 8 1 3.0117 -1.2559 -0.3966 9 6 1.4034 -2.3748 0.5197 10 6 0.4002 -2.2746 1.5007 11 6 -0.1893 -3.4195 1.9972 12 7 -1.1913 -3.3214 2.9680 13 6 -1.8148 -4.5346 3.5022 14 1 -1.5623 -5.4600 2.9844 15 6 -2.0348 -4.6087 5.0145 16 6 -3.2275 -4.4090 4.0760 17 1 -3.9044 -5.2517 3.9360 18 6 -3.8807 -3.0257 4.0485 19 6 -5.2841 -2.9189 3.4485 20 6 -4.0798 -2.3655 2.6827 21 6 0.2139 -4.6751 1.5396 22 6 1.2012 -4.7889 0.5812 23 6 1.8048 -3.6527 0.0621 24 7 2.7981 -3.7686 -0.9014 25 1 -0.4850 -0.8358 -0.0843 26 1 0.0894 -1.3051 1.8610 27 1 -1.4732 -2.4501 3.2876 28 1 -1.9276 -5.5828 5.4916 29 1 -1.7153 -3.7549 5.6120 30 1 -3.6429 -2.3766 4.8913 31 1 -5.7419 -3.8340 3.0730 32 1 -5.9695 -2.1994 3.8963 33 1 -3.9734 -1.2821 2.6271 34 1 -3.7450 -2.9165 1.8038 35 1 -0.2505 -5.5650 1.9382 36 1 1.5053 -5.7658 0.2351 37 1 3.2187 -2.9726 -1.2625 38 1 3.0713 -4.6455 -1.2134 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716986137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:42 Heat of formation + Delta-G solvation = 52.317261 kcal Electronic energy + Delta-G solvation = -18816.081125 eV Core-core repulsion = 16044.443762 eV Total energy + Delta-G solvation = -2771.637362 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.29624 -39.33702 -36.82618 -35.59319 -35.18415 -32.34648 -31.04268 -28.02005 -26.54288 -24.80157 -23.53334 -23.26205 -22.45156 -21.77735 -20.50961 -19.38188 -17.75622 -17.47502 -17.08315 -16.63924 -16.04494 -15.74541 -15.49217 -14.83623 -14.64586 -14.24973 -13.98916 -13.84840 -13.46839 -13.17486 -12.94795 -12.64125 -12.41088 -12.35306 -12.23216 -11.98216 -11.96448 -11.60786 -11.49590 -11.12744 -10.85425 -10.72086 -10.53124 -9.38024 -9.26140 -9.06962 -7.40694 -6.07392 1.05430 1.41826 1.52200 1.69621 1.80215 2.39555 2.68652 2.77177 2.87620 3.13127 3.68427 3.73647 3.81008 3.91912 3.99188 4.17328 4.23860 4.44368 4.49373 4.51827 4.73105 4.78313 4.87061 4.95059 5.03030 5.10891 5.23295 5.24381 5.26460 5.32457 5.46591 5.68705 5.83613 5.89165 6.04621 6.18840 6.37032 6.73554 6.95301 7.11141 7.15053 7.37040 7.58442 8.23136 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.006330 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.596537 B = 4422.436674 C = 5523.082315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.002 3.998 3 Si 1.114 2.886 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.056 3.944 10 C -0.276 4.276 11 C 0.195 3.805 12 N -0.719 5.719 13 C 0.090 3.910 14 H 0.124 0.876 15 C -0.186 4.186 16 C -0.132 4.132 17 H 0.123 0.877 18 C -0.126 4.126 19 C -0.157 4.157 20 C -0.187 4.187 21 C -0.266 4.266 22 C -0.147 4.147 23 C 0.063 3.937 24 N -0.878 5.878 25 H 0.281 0.719 26 H 0.080 0.920 27 H 0.389 0.611 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.389 0.611 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -5.936 6.167 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.213 4.213 3 Si 0.933 3.067 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.088 0.912 9 C 0.051 3.949 10 C -0.301 4.301 11 C 0.095 3.905 12 N -0.348 5.348 13 C -0.018 4.018 14 H 0.142 0.858 15 C -0.225 4.225 16 C -0.152 4.152 17 H 0.141 0.859 18 C -0.144 4.144 19 C -0.194 4.194 20 C -0.224 4.224 21 C -0.290 4.290 22 C -0.171 4.171 23 C -0.038 4.038 24 N -0.422 5.422 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.223 0.777 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.217 0.783 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.751 -4.458 6.279 9.611 hybrid contribution 0.319 -1.233 -0.336 1.317 sum -5.432 -5.692 5.943 9.860 Atomic orbital electron populations 1.70531 1.08865 1.32956 1.33150 1.28126 0.95779 1.06950 0.90400 0.83042 0.74736 0.70388 0.78548 1.18758 1.19292 1.20180 1.20300 1.02755 0.95192 1.40329 0.91228 1.17404 0.93395 0.91961 0.92135 1.20227 1.08483 0.95299 1.06043 1.17469 0.89522 0.93447 0.90109 1.43775 1.40617 1.06330 1.44111 1.21588 0.95743 0.90192 0.94282 0.85834 1.23598 1.01589 1.03799 0.93489 1.22354 0.90800 0.97065 1.04977 0.85900 1.21657 0.99840 0.96404 0.96494 1.23051 0.90188 1.03373 1.02743 1.22811 1.04296 0.99793 0.95548 1.19961 1.06747 0.94498 1.07796 1.20116 1.00366 0.95628 1.01031 1.17985 0.96608 0.93293 0.95960 1.41679 1.44023 1.09411 1.47127 0.90711 0.90190 0.77684 0.86529 0.89481 0.87912 0.87949 0.87530 0.89863 0.90726 0.86747 0.86830 0.78275 0.78114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.48 12.35 21.82 0.27 -46.21 16 2 C 0.00 0.11 4.93 85.23 0.42 0.53 16 3 Si 1.11 45.06 30.00 68.60 2.06 47.12 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.56 -30.18 8.41 23.35 0.20 -29.98 16 8 H 0.07 3.62 6.76 -2.91 -0.02 3.60 16 9 C 0.06 3.07 5.29 -21.18 -0.11 2.95 16 10 C -0.28 -14.65 7.76 22.81 0.18 -14.47 16 11 C 0.20 9.03 6.64 38.14 0.25 9.29 16 12 N -0.72 -27.33 5.08 -318.97 -1.62 -28.96 16 13 C 0.09 2.68 6.25 44.99 0.28 2.96 16 14 H 0.12 3.66 5.88 -2.39 -0.01 3.65 16 15 C -0.19 -4.44 10.18 30.62 0.31 -4.13 16 16 C -0.13 -3.18 5.87 -10.77 -0.06 -3.25 16 17 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 18 C -0.13 -3.11 5.02 -10.79 -0.05 -3.16 16 19 C -0.16 -3.41 10.26 30.62 0.31 -3.09 16 20 C -0.19 -5.37 9.11 30.62 0.28 -5.09 16 21 C -0.27 -11.63 9.32 22.56 0.21 -11.42 16 22 C -0.15 -6.51 9.86 22.35 0.22 -6.29 16 23 C 0.06 3.08 6.79 38.97 0.26 3.34 16 24 N -0.88 -35.76 8.98 -50.31 -0.45 -36.22 16 25 H 0.28 16.54 6.71 -92.71 -0.62 15.92 16 26 H 0.08 4.53 6.55 -2.91 -0.02 4.52 16 27 H 0.39 14.94 7.42 -92.71 -0.69 14.25 16 28 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.11 4.33 5.86 -2.91 -0.02 4.31 16 36 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.39 15.85 7.05 -92.71 -0.65 15.20 16 38 H 0.39 13.08 8.83 -92.71 -0.82 12.26 16 Total: -1.00 -60.94 311.68 2.04 -58.90 By element: Atomic # 1 Polarization: 68.08 SS G_CDS: -0.91 Total: 67.17 kcal Atomic # 6 Polarization: -64.51 SS G_CDS: 2.70 Total: -61.81 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -1.80 Total: -111.38 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.06 Total: 47.12 kcal Total: -60.94 2.04 -58.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716986137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.217 kcal (2) G-P(sol) polarization free energy of solvation -60.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds