Wall clock time and date at job start Mon Mar 30 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86796 * 119.99780 * 2 1 4 4 H 1.48501 * 109.46980 * 264.98316 * 3 2 1 5 5 H 1.48495 * 109.47428 * 24.98881 * 3 2 1 6 6 H 1.48501 * 109.46943 * 144.99038 * 3 2 1 7 7 C 1.39887 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99767 * 192.54324 * 7 2 1 9 9 C 1.41029 * 120.00374 * 12.54859 * 7 2 1 10 10 C 1.40664 * 120.26589 * 28.70164 * 9 7 2 11 11 C 1.38001 * 119.76918 * 179.97438 * 10 9 7 12 12 N 1.39855 * 119.83995 * 179.97438 * 11 10 9 13 13 C 1.46503 * 119.99736 * 179.97438 * 12 11 10 14 14 H 1.08998 * 115.55350 * 9.42149 * 13 12 11 15 15 C 1.53007 * 117.49747 * 223.74699 * 13 12 11 16 16 C 1.53003 * 117.49849 * 155.09138 * 13 12 11 17 17 H 1.09000 * 117.49797 * 215.00542 * 16 13 12 18 18 C 1.53007 * 117.49546 * 359.97438 * 16 13 12 19 19 C 1.53004 * 117.49711 * 248.74740 * 18 16 13 20 20 C 1.52995 * 117.49653 * 180.09183 * 18 16 13 21 21 C 1.39597 * 120.32124 * 0.02562 * 11 10 9 22 22 C 1.38065 * 120.55201 * 359.97438 * 21 11 10 23 23 C 1.38743 * 120.21295 * 359.69563 * 22 21 11 24 24 N 1.38864 * 120.15715 * 180.29826 * 23 22 21 25 25 H 0.96995 * 120.00183 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.11651 * 359.97438 * 10 9 7 27 27 H 0.96999 * 120.00130 * 0.02562 * 12 11 10 28 28 H 1.08998 * 117.49667 * 0.02562 * 15 13 12 29 29 H 1.09000 * 117.49680 * 145.02101 * 15 13 12 30 30 H 1.09000 * 115.54671 * 34.41847 * 18 16 13 31 31 H 1.08996 * 117.49741 * 0.02562 * 19 18 16 32 32 H 1.09004 * 117.49253 * 145.01972 * 19 18 16 33 33 H 1.09007 * 117.49758 * 214.98074 * 20 18 16 34 34 H 1.08998 * 117.50013 * 359.97152 * 20 18 16 35 35 H 1.07999 * 119.73092 * 179.97438 * 21 11 10 36 36 H 1.08000 * 119.89194 * 180.02562 * 22 21 11 37 37 H 0.97001 * 119.99509 * 180.28008 * 24 23 22 38 38 H 0.96995 * 120.00786 * 0.28947 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.5965 1.9852 -1.3947 5 1 1.3915 2.6809 0.5914 6 1 3.4836 1.4730 0.8033 7 6 2.0084 -1.2115 0.0005 8 1 3.0691 -1.2226 0.2037 9 6 1.3285 -2.4184 -0.2643 10 6 0.1847 -2.4228 -1.0830 11 6 -0.4724 -3.6097 -1.3358 12 7 -1.6101 -3.6158 -2.1491 13 6 -2.3100 -4.8739 -2.4202 14 1 -1.9836 -5.7302 -1.8299 15 6 -2.7577 -5.1374 -3.8594 16 6 -3.7934 -4.7925 -2.7862 17 1 -4.4428 -5.5951 -2.4367 18 6 -4.4323 -3.4033 -2.8406 19 6 -5.4652 -3.0582 -1.7657 20 6 -5.9161 -3.3220 -3.2045 21 6 -0.0076 -4.8042 -0.7827 22 6 1.1137 -4.8152 0.0227 23 6 1.7957 -3.6360 0.2861 24 7 2.9269 -3.6493 1.0913 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1781 -1.5006 -1.5122 27 1 -1.9354 -2.7871 -2.5343 28 1 -2.5312 -4.3748 -4.6045 29 1 -2.7262 -6.1670 -4.2158 30 1 -3.7833 -2.6008 -3.1911 31 1 -5.6891 -3.8207 -1.0198 32 1 -5.4959 -2.0285 -1.4095 33 1 -6.2435 -2.4657 -3.7943 34 1 -6.4370 -4.2580 -3.4057 35 1 -0.5294 -5.7276 -0.9865 36 1 1.4642 -5.7455 0.4447 37 1 3.3996 -2.8229 1.2773 38 1 3.2447 -4.4849 1.4677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716986140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:02 Heat of formation + Delta-G solvation = 73.378434 kcal Electronic energy + Delta-G solvation = -18569.570202 eV Core-core repulsion = 15798.846120 eV Total energy + Delta-G solvation = -2770.724081 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.76525 -37.60173 -35.63013 -33.63962 -33.39989 -30.64336 -29.40461 -26.18740 -24.78544 -23.66581 -22.33227 -21.88725 -20.73930 -20.14700 -19.05427 -17.10321 -16.38155 -15.68225 -15.44107 -15.27560 -14.66628 -14.49311 -13.72443 -13.60068 -12.69868 -12.39860 -12.25492 -12.15709 -11.74103 -11.54796 -11.44133 -11.24607 -11.12408 -11.03244 -10.97043 -10.87926 -10.37294 -10.25100 -9.89320 -9.47894 -9.29976 -9.15758 -9.06903 -7.65327 -7.19483 -6.57780 -5.52501 -4.07460 2.91825 3.14205 3.16407 3.30650 3.41251 3.76461 4.04724 4.27608 4.45481 4.69066 4.84597 4.98409 5.12910 5.38943 5.41589 5.43041 5.49925 5.55827 5.70321 5.90234 5.97754 5.99168 6.16278 6.20368 6.29865 6.36766 6.44549 6.64686 7.11982 7.14920 7.32988 7.47653 7.71559 7.86602 7.98107 8.13358 8.46159 8.73590 8.88576 8.94617 8.99937 9.25717 9.33654 10.41072 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.005824 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.516706 B = 4806.559420 C = 5974.024843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.071 0.929 9 C 0.095 3.905 10 C -0.194 4.194 11 C 0.175 3.825 12 N -0.725 5.725 13 C 0.126 3.874 14 H 0.124 0.876 15 C -0.205 4.205 16 C -0.149 4.149 17 H 0.101 0.899 18 C -0.111 4.111 19 C -0.173 4.173 20 C -0.183 4.183 21 C -0.251 4.251 22 C -0.154 4.154 23 C 0.088 3.912 24 N -0.888 5.888 25 H 0.274 0.726 26 H 0.117 0.883 27 H 0.389 0.611 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.389 0.611 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 -5.048 -4.101 9.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.089 0.911 9 C 0.090 3.910 10 C -0.218 4.218 11 C 0.077 3.923 12 N -0.356 5.356 13 C 0.017 3.983 14 H 0.142 0.858 15 C -0.245 4.245 16 C -0.169 4.169 17 H 0.119 0.881 18 C -0.130 4.130 19 C -0.210 4.210 20 C -0.221 4.221 21 C -0.275 4.275 22 C -0.178 4.178 23 C -0.013 4.013 24 N -0.431 5.431 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.224 0.776 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.217 0.783 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.502 -5.011 -4.096 9.174 hybrid contribution 0.353 1.083 0.063 1.141 sum -6.149 -3.928 -4.033 8.337 Atomic orbital electron populations 1.69863 1.07140 1.28273 1.37886 1.25737 0.94726 1.00597 0.92956 0.86413 0.80213 0.81321 0.79131 1.19612 1.20660 1.19045 1.19121 0.95732 0.90716 1.44083 0.91143 1.16958 0.92705 0.90402 0.90967 1.20493 1.00919 0.94922 1.05451 1.17500 0.87349 0.94313 0.93155 1.43772 1.29621 1.06012 1.56199 1.21341 0.90826 0.90747 0.95417 0.85827 1.23548 1.04619 1.01967 0.94337 1.22261 0.93151 0.96124 1.05339 0.88129 1.21507 0.90953 0.96785 1.03737 1.22890 1.03742 1.02508 0.91860 1.22936 0.97625 1.02720 0.98771 1.19659 1.02423 0.94901 1.10489 1.19717 0.98655 0.94768 1.04664 1.17891 0.91506 0.94170 0.97767 1.41815 1.31928 1.10092 1.59259 0.91517 0.86477 0.77643 0.89077 0.88997 0.88106 0.88938 0.88849 0.89200 0.89126 0.89495 0.89701 0.78306 0.80098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.14 10.93 55.55 0.61 -20.53 16 2 C 0.08 1.91 5.22 -17.33 -0.09 1.82 16 3 Si 0.90 19.08 29.58 -169.99 -5.03 14.05 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.47 -12.24 8.44 -37.91 -0.32 -12.56 16 8 H 0.07 1.77 6.76 -52.49 -0.36 1.41 16 9 C 0.09 2.52 5.56 -106.66 -0.59 1.93 16 10 C -0.19 -5.03 8.47 -38.75 -0.33 -5.36 16 11 C 0.17 4.07 6.64 -83.78 -0.56 3.52 16 12 N -0.73 -14.09 5.52 -52.17 -0.29 -14.37 16 13 C 0.13 2.03 6.29 -67.92 -0.43 1.60 16 14 H 0.12 2.00 5.88 -51.93 -0.31 1.69 16 15 C -0.20 -2.77 10.18 -26.69 -0.27 -3.04 16 16 C -0.15 -2.02 5.85 -90.58 -0.53 -2.55 16 17 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.11 -1.50 5.33 -90.62 -0.48 -1.99 16 19 C -0.17 -2.21 10.25 -26.69 -0.27 -2.48 16 20 C -0.18 -2.09 10.25 -26.70 -0.27 -2.36 16 21 C -0.25 -5.68 9.32 -39.14 -0.36 -6.05 16 22 C -0.15 -3.52 9.86 -39.46 -0.39 -3.91 16 23 C 0.09 2.13 6.79 -83.23 -0.56 1.56 16 24 N -0.89 -18.23 8.98 32.75 0.29 -17.93 16 25 H 0.27 6.66 8.30 -40.82 -0.34 6.33 16 26 H 0.12 3.17 6.28 -52.49 -0.33 2.84 16 27 H 0.39 7.37 7.15 -40.82 -0.29 7.07 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.45 6.88 -51.93 -0.36 1.09 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.76 5.86 -52.49 -0.31 1.45 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.39 7.84 7.09 -40.82 -0.29 7.55 16 38 H 0.37 6.48 8.83 -40.82 -0.36 6.12 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -27.82 312.88 -10.28 -38.10 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -5.11 Total: 25.85 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -5.47 Total: -29.87 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.61 Total: -52.84 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.82 -10.28 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716986140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.474 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds