Wall clock time and date at job start Mon Mar 30 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86796 * 119.99780 * 2 1 4 4 H 1.48501 * 109.46980 * 264.98316 * 3 2 1 5 5 H 1.48495 * 109.47428 * 24.98881 * 3 2 1 6 6 H 1.48501 * 109.46943 * 144.99038 * 3 2 1 7 7 C 1.39887 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99767 * 192.54324 * 7 2 1 9 9 C 1.41029 * 120.00374 * 12.54859 * 7 2 1 10 10 C 1.40664 * 120.26589 * 28.70164 * 9 7 2 11 11 C 1.38001 * 119.76918 * 179.97438 * 10 9 7 12 12 N 1.39855 * 119.83995 * 179.97438 * 11 10 9 13 13 C 1.46503 * 119.99736 * 179.97438 * 12 11 10 14 14 H 1.08998 * 115.55350 * 9.42149 * 13 12 11 15 15 C 1.53007 * 117.49747 * 223.74699 * 13 12 11 16 16 C 1.53003 * 117.49849 * 155.09138 * 13 12 11 17 17 H 1.09000 * 117.49797 * 215.00542 * 16 13 12 18 18 C 1.53007 * 117.49546 * 359.97438 * 16 13 12 19 19 C 1.53004 * 117.49711 * 248.74740 * 18 16 13 20 20 C 1.52995 * 117.49653 * 180.09183 * 18 16 13 21 21 C 1.39597 * 120.32124 * 0.02562 * 11 10 9 22 22 C 1.38065 * 120.55201 * 359.97438 * 21 11 10 23 23 C 1.38743 * 120.21295 * 359.69563 * 22 21 11 24 24 N 1.38864 * 120.15715 * 180.29826 * 23 22 21 25 25 H 0.96995 * 120.00183 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.11651 * 359.97438 * 10 9 7 27 27 H 0.96999 * 120.00130 * 0.02562 * 12 11 10 28 28 H 1.08998 * 117.49667 * 0.02562 * 15 13 12 29 29 H 1.09000 * 117.49680 * 145.02101 * 15 13 12 30 30 H 1.09000 * 115.54671 * 34.41847 * 18 16 13 31 31 H 1.08996 * 117.49741 * 0.02562 * 19 18 16 32 32 H 1.09004 * 117.49253 * 145.01972 * 19 18 16 33 33 H 1.09007 * 117.49758 * 214.98074 * 20 18 16 34 34 H 1.08998 * 117.50013 * 359.97152 * 20 18 16 35 35 H 1.07999 * 119.73092 * 179.97438 * 21 11 10 36 36 H 1.08000 * 119.89194 * 180.02562 * 22 21 11 37 37 H 0.97001 * 119.99509 * 180.28008 * 24 23 22 38 38 H 0.96995 * 120.00786 * 0.28947 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.5965 1.9852 -1.3947 5 1 1.3915 2.6809 0.5914 6 1 3.4836 1.4730 0.8033 7 6 2.0084 -1.2115 0.0005 8 1 3.0691 -1.2226 0.2037 9 6 1.3285 -2.4184 -0.2643 10 6 0.1847 -2.4228 -1.0830 11 6 -0.4724 -3.6097 -1.3358 12 7 -1.6101 -3.6158 -2.1491 13 6 -2.3100 -4.8739 -2.4202 14 1 -1.9836 -5.7302 -1.8299 15 6 -2.7577 -5.1374 -3.8594 16 6 -3.7934 -4.7925 -2.7862 17 1 -4.4428 -5.5951 -2.4367 18 6 -4.4323 -3.4033 -2.8406 19 6 -5.4652 -3.0582 -1.7657 20 6 -5.9161 -3.3220 -3.2045 21 6 -0.0076 -4.8042 -0.7827 22 6 1.1137 -4.8152 0.0227 23 6 1.7957 -3.6360 0.2861 24 7 2.9269 -3.6493 1.0913 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1781 -1.5006 -1.5122 27 1 -1.9354 -2.7871 -2.5343 28 1 -2.5312 -4.3748 -4.6045 29 1 -2.7262 -6.1670 -4.2158 30 1 -3.7833 -2.6008 -3.1911 31 1 -5.6891 -3.8207 -1.0198 32 1 -5.4959 -2.0285 -1.4095 33 1 -6.2435 -2.4657 -3.7943 34 1 -6.4370 -4.2580 -3.4057 35 1 -0.5294 -5.7276 -0.9865 36 1 1.4642 -5.7455 0.4447 37 1 3.3996 -2.8229 1.2773 38 1 3.2447 -4.4849 1.4677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716986140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:00 Heat of formation + Delta-G solvation = 58.294441 kcal Electronic energy + Delta-G solvation = -18570.224293 eV Core-core repulsion = 15798.846120 eV Total energy + Delta-G solvation = -2771.378172 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.12546 -39.17185 -36.89471 -35.34838 -35.08451 -32.24069 -31.29365 -27.97532 -26.59604 -24.76467 -23.56651 -23.15962 -22.31657 -21.65727 -20.43655 -18.84784 -17.98089 -17.32891 -16.93740 -16.71703 -16.36148 -15.88285 -15.07973 -14.77916 -14.35193 -14.12961 -13.89947 -13.83711 -13.22812 -13.12404 -12.88944 -12.69355 -12.62227 -12.41355 -12.20027 -12.10092 -12.00268 -11.73297 -11.39966 -11.13609 -10.94910 -10.83954 -10.30265 -9.24644 -9.07743 -8.46608 -7.26226 -6.01244 1.13090 1.40884 1.51085 1.51725 1.63689 2.27755 2.67631 2.83464 2.94918 3.37977 3.63806 3.77929 3.93365 3.95133 4.06890 4.26949 4.35322 4.40523 4.48075 4.63156 4.79226 4.80011 4.93800 5.00367 5.05098 5.23958 5.24560 5.27317 5.35130 5.39444 5.45703 5.67060 5.91068 6.07019 6.16300 6.30225 6.57691 6.98195 7.07363 7.14146 7.23609 7.47323 7.67901 8.53864 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.005824 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.516706 B = 4806.559420 C = 5974.024843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.031 3.969 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.493 4.493 8 H 0.074 0.926 9 C 0.060 3.940 10 C -0.220 4.220 11 C 0.172 3.828 12 N -0.724 5.724 13 C 0.091 3.909 14 H 0.124 0.876 15 C -0.186 4.186 16 C -0.130 4.130 17 H 0.121 0.879 18 C -0.134 4.134 19 C -0.183 4.183 20 C -0.158 4.158 21 C -0.254 4.254 22 C -0.158 4.158 23 C 0.071 3.929 24 N -0.879 5.879 25 H 0.277 0.723 26 H 0.094 0.906 27 H 0.387 0.613 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.390 0.610 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -6.241 -4.565 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.244 4.244 11 C 0.072 3.928 12 N -0.355 5.355 13 C -0.016 4.016 14 H 0.142 0.858 15 C -0.226 4.226 16 C -0.149 4.149 17 H 0.139 0.861 18 C -0.152 4.152 19 C -0.220 4.220 20 C -0.195 4.195 21 C -0.277 4.277 22 C -0.182 4.182 23 C -0.031 4.031 24 N -0.422 5.422 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.221 0.779 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.218 0.782 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.191 -6.246 -4.567 10.563 hybrid contribution 0.480 1.343 0.171 1.436 sum -6.710 -4.904 -4.396 9.402 Atomic orbital electron populations 1.69963 1.08604 1.29192 1.38878 1.26560 0.95474 1.03830 0.92216 0.85317 0.78982 0.76815 0.79103 1.19410 1.20123 1.18155 1.19379 0.96027 0.91621 1.45399 0.90841 1.17342 0.93559 0.91697 0.91947 1.20447 1.02043 0.95140 1.06801 1.17606 0.88120 0.93796 0.93236 1.43784 1.28795 1.07433 1.55452 1.21572 0.92909 0.89309 0.97855 0.85802 1.23567 1.03103 1.03175 0.92721 1.22297 0.91832 0.96634 1.04179 0.86137 1.21527 0.92080 0.96450 1.05191 1.22939 1.03946 1.02343 0.92818 1.23011 0.95394 1.03865 0.97259 1.20014 1.02394 0.95558 1.09749 1.20084 0.98419 0.95433 1.04292 1.18066 0.92665 0.93979 0.98371 1.41685 1.30900 1.11060 1.58601 0.91266 0.88759 0.77864 0.89635 0.86558 0.89782 0.88552 0.89530 0.88201 0.87383 0.86908 0.86900 0.78228 0.78165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.73 10.93 21.82 0.24 -45.49 16 2 C 0.03 1.61 5.22 85.23 0.44 2.06 16 3 Si 0.98 39.85 29.58 68.60 2.03 41.88 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.49 -26.69 8.44 23.35 0.20 -26.49 16 8 H 0.07 3.77 6.76 -2.91 -0.02 3.75 16 9 C 0.06 3.27 5.56 -21.18 -0.12 3.15 16 10 C -0.22 -11.90 8.47 22.81 0.19 -11.71 16 11 C 0.17 8.17 6.64 38.13 0.25 8.42 16 12 N -0.72 -28.46 5.52 -318.96 -1.76 -30.22 16 13 C 0.09 2.82 6.29 44.99 0.28 3.10 16 14 H 0.12 3.77 5.88 -2.39 -0.01 3.76 16 15 C -0.19 -4.61 10.18 30.62 0.31 -4.30 16 16 C -0.13 -3.23 5.85 -10.77 -0.06 -3.30 16 17 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 18 C -0.13 -3.45 5.33 -10.79 -0.06 -3.51 16 19 C -0.18 -4.47 10.25 30.62 0.31 -4.16 16 20 C -0.16 -3.22 10.25 30.62 0.31 -2.90 16 21 C -0.25 -11.28 9.32 22.56 0.21 -11.07 16 22 C -0.16 -7.07 9.86 22.35 0.22 -6.85 16 23 C 0.07 3.47 6.79 38.97 0.26 3.74 16 24 N -0.88 -35.62 8.98 -50.31 -0.45 -36.07 16 25 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 26 H 0.09 5.43 6.28 -2.91 -0.02 5.41 16 27 H 0.39 15.21 7.15 -92.71 -0.66 14.55 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.08 2.44 6.88 -2.39 -0.02 2.42 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 4.35 5.86 -2.91 -0.02 4.33 16 36 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.39 15.70 7.09 -92.71 -0.66 15.04 16 38 H 0.39 13.00 8.83 -92.71 -0.82 12.18 16 Total: -1.00 -61.13 312.88 1.79 -59.34 By element: Atomic # 1 Polarization: 65.41 SS G_CDS: -1.03 Total: 64.38 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 2.77 Total: -53.81 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -1.97 Total: -111.78 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -61.13 1.79 -59.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716986140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.637 kcal (2) G-P(sol) polarization free energy of solvation -61.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds