Wall clock time and date at job start Mon Mar 30 2020 07:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86793 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47457 * 274.97085 * 3 2 1 5 5 H 1.48504 * 109.47135 * 34.96984 * 3 2 1 6 6 H 1.48495 * 109.47370 * 154.96864 * 3 2 1 7 7 C 1.39882 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00147 * 195.34594 * 7 2 1 9 9 C 1.41031 * 120.00617 * 15.34043 * 7 2 1 10 10 C 1.40670 * 120.26213 * 25.55440 * 9 7 2 11 11 C 1.38006 * 119.76901 * 180.02562 * 10 9 7 12 12 N 1.39849 * 119.83952 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00148 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47179 * 180.02562 * 13 12 11 15 15 C 1.54631 * 111.03974 * 72.97723 * 14 13 12 16 16 C 1.51097 * 104.73156 * 142.66468 * 15 14 13 17 17 C 1.30535 * 111.10132 * 343.56515 * 16 15 14 18 18 C 1.51097 * 111.10316 * 359.97438 * 17 16 15 19 19 C 1.39597 * 120.32084 * 0.25713 * 11 10 9 20 20 C 1.38065 * 120.54921 * 359.48249 * 19 11 10 21 21 C 1.38733 * 120.21613 * 0.51638 * 20 19 11 22 22 N 1.38860 * 120.15897 * 179.72284 * 21 20 19 23 23 H 0.97005 * 119.99754 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.11452 * 0.04382 * 10 9 7 25 25 H 0.97003 * 119.99825 * 0.02562 * 12 11 10 26 26 H 1.08998 * 109.47008 * 59.99910 * 13 12 11 27 27 H 1.09009 * 109.46945 * 299.99983 * 13 12 11 28 28 H 1.09005 * 110.94345 * 308.98642 * 14 13 12 29 29 H 1.09002 * 110.38659 * 261.47524 * 15 14 13 30 30 H 1.09001 * 110.39043 * 23.84764 * 15 14 13 31 31 H 1.07998 * 124.45256 * 163.57942 * 16 15 14 32 32 H 1.07996 * 124.44652 * 180.02562 * 17 16 15 33 33 H 1.08997 * 110.38730 * 257.63035 * 18 17 16 34 34 H 1.08998 * 110.48271 * 135.29583 * 18 17 16 35 35 H 1.08002 * 119.72533 * 179.71903 * 19 11 10 36 36 H 1.08000 * 119.88850 * 180.25549 * 20 19 11 37 37 H 0.97005 * 120.00040 * 180.02562 * 22 21 20 38 38 H 0.97005 * 120.00211 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3856 2.1070 -1.3948 5 1 1.4971 2.6200 0.8025 6 1 3.5892 1.4120 0.5924 7 6 2.0084 -1.2115 -0.0005 8 1 3.0595 -1.2284 0.2470 9 6 1.3409 -2.4110 -0.3242 10 6 0.1931 -2.3865 -1.1370 11 6 -0.4524 -3.5663 -1.4469 12 7 -1.5939 -3.5436 -2.2545 13 6 -2.2822 -4.7938 -2.5852 14 6 -3.4898 -4.4913 -3.4747 15 6 -3.0438 -4.1086 -4.9049 16 6 -4.0814 -4.7304 -5.8103 17 6 -4.7749 -5.6370 -5.1770 18 6 -4.3150 -5.7713 -3.7441 19 6 0.0253 -4.7816 -0.9534 20 6 1.1537 -4.8215 -0.1588 21 6 1.8202 -3.6491 0.1668 22 7 2.9516 -3.6901 0.9707 23 1 -0.4850 0.8401 0.0004 24 1 -0.1815 -1.4477 -1.5175 25 1 -1.9299 -2.7000 -2.5956 26 1 -2.6182 -5.2772 -1.6679 27 1 -1.5977 -5.4562 -3.1153 28 1 -4.1107 -3.7101 -3.0362 29 1 -3.0369 -3.0251 -5.0234 30 1 -2.0576 -4.5209 -5.1183 31 1 -4.2296 -4.4605 -6.8454 32 1 -5.5722 -6.2158 -5.6195 33 1 -3.6912 -6.6575 -3.6269 34 1 -5.1713 -5.8189 -3.0715 35 1 -0.4900 -5.6986 -1.1982 36 1 1.5162 -5.7681 0.2138 37 1 3.4157 -2.8689 1.1972 38 1 3.2781 -4.5399 1.3058 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717403541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:42 Heat of formation + Delta-G solvation = 33.336260 kcal Electronic energy + Delta-G solvation = -18450.771828 eV Core-core repulsion = 15678.311388 eV Total energy + Delta-G solvation = -2772.460440 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.94541 -37.73695 -35.09590 -33.43066 -32.06921 -29.59659 -29.34124 -28.13720 -26.38765 -24.73627 -23.70629 -21.19174 -19.85753 -19.66986 -18.74589 -17.03014 -16.24387 -16.00576 -15.44144 -15.10254 -14.81467 -14.48500 -13.83206 -13.26870 -12.75447 -12.67009 -12.39481 -12.15538 -11.89717 -11.81546 -11.47345 -11.27091 -11.18295 -11.11605 -10.98997 -10.86646 -10.72107 -10.33407 -9.82081 -9.66180 -9.29193 -9.04096 -8.90827 -7.71949 -7.18916 -6.58199 -5.49832 -4.04201 2.22361 2.92834 3.15081 3.17782 3.33624 3.51732 4.05206 4.34627 4.66267 4.78419 4.86179 5.06387 5.26975 5.37723 5.45686 5.69227 5.74983 5.79721 5.90005 5.92580 6.00352 6.07457 6.25393 6.39971 6.46297 6.49803 6.66992 6.86301 7.15348 7.18777 7.35493 7.52555 7.73775 7.91923 8.04104 8.15948 8.49129 8.79400 8.93993 8.97710 9.03474 9.28949 9.37354 10.40228 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.004881 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.850600 B = 5734.641274 C = 6712.492319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.071 0.929 9 C 0.094 3.906 10 C -0.201 4.201 11 C 0.177 3.823 12 N -0.762 5.762 13 C 0.150 3.850 14 C -0.103 4.103 15 C -0.097 4.097 16 C -0.165 4.165 17 C -0.173 4.173 18 C -0.093 4.093 19 C -0.255 4.255 20 C -0.153 4.153 21 C 0.084 3.916 22 N -0.889 5.889 23 H 0.274 0.726 24 H 0.119 0.881 25 H 0.387 0.613 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.388 0.612 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 -6.154 -6.652 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.089 3.911 10 C -0.226 4.226 11 C 0.078 3.922 12 N -0.397 5.397 13 C 0.025 3.975 14 C -0.122 4.122 15 C -0.134 4.134 16 C -0.183 4.183 17 C -0.191 4.191 18 C -0.131 4.131 19 C -0.279 4.279 20 C -0.177 4.177 21 C -0.016 4.016 22 N -0.432 5.432 23 H 0.085 0.915 24 H 0.137 0.863 25 H 0.220 0.780 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.216 0.784 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.289 -6.164 -6.677 11.051 hybrid contribution 0.397 1.026 0.065 1.102 sum -5.892 -5.138 -6.612 10.239 Atomic orbital electron populations 1.69887 1.07223 1.28241 1.37470 1.25743 0.94673 1.00648 0.92914 0.86406 0.80463 0.81518 0.78830 1.19712 1.20611 1.18932 1.19152 0.96624 0.91066 1.42645 0.91123 1.16976 0.92674 0.90258 0.91198 1.20533 1.01041 0.95163 1.05815 1.17521 0.87444 0.94129 0.93067 1.44303 1.30457 1.06403 1.58554 1.20982 0.91539 0.88343 0.96677 1.22267 0.96786 0.97778 0.95365 1.21461 0.98253 1.00745 0.92923 1.23350 0.97374 0.98273 0.99290 1.23253 0.99924 0.99344 0.96532 1.21343 0.99225 0.98128 0.94362 1.19613 1.02362 0.94493 1.11455 1.19701 0.98677 0.94590 1.04775 1.17857 0.91675 0.93911 0.98206 1.41811 1.32116 1.09098 1.60175 0.91522 0.86309 0.77983 0.93553 0.93541 0.89965 0.91212 0.90234 0.86248 0.86213 0.90455 0.91211 0.89780 0.89830 0.78360 0.80138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.13 10.88 55.54 0.60 -20.53 16 2 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.30 8.50 -37.91 -0.32 -12.62 16 8 H 0.07 1.79 6.67 -52.49 -0.35 1.44 16 9 C 0.09 2.53 5.58 -106.66 -0.60 1.93 16 10 C -0.20 -5.29 8.50 -38.75 -0.33 -5.61 16 11 C 0.18 4.18 6.64 -83.78 -0.56 3.63 16 12 N -0.76 -14.77 5.68 -58.64 -0.33 -15.10 16 13 C 0.15 2.38 4.22 -4.04 -0.02 2.36 16 14 C -0.10 -1.33 3.16 -88.89 -0.28 -1.61 16 15 C -0.10 -1.20 6.33 -26.83 -0.17 -1.37 16 16 C -0.16 -1.79 10.78 -35.70 -0.38 -2.18 16 17 C -0.17 -1.80 10.78 -35.70 -0.38 -2.18 16 18 C -0.09 -1.03 6.38 -26.82 -0.17 -1.20 16 19 C -0.26 -5.91 9.31 -39.14 -0.36 -6.27 16 20 C -0.15 -3.57 9.86 -39.46 -0.39 -3.96 16 21 C 0.08 2.08 6.79 -83.23 -0.56 1.51 16 22 N -0.89 -18.50 8.98 32.74 0.29 -18.21 16 23 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 24 H 0.12 3.24 6.14 -52.49 -0.32 2.92 16 25 H 0.39 7.20 8.48 -40.82 -0.35 6.86 16 26 H 0.05 0.76 7.93 -51.93 -0.41 0.35 16 27 H 0.05 0.75 7.73 -51.92 -0.40 0.35 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.08 0.84 7.89 -51.93 -0.41 0.43 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.77 6.69 -52.49 -0.35 1.42 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.39 7.92 7.04 -40.82 -0.29 7.64 16 38 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -28.44 310.50 -9.72 -38.16 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -5.31 Total: 22.66 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -4.62 Total: -25.74 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.56 Total: -53.84 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.44 -9.72 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717403541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.498 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds