Wall clock time and date at job start Mon Mar 30 2020 07:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86793 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47457 * 274.97085 * 3 2 1 5 5 H 1.48504 * 109.47135 * 34.96984 * 3 2 1 6 6 H 1.48495 * 109.47370 * 154.96864 * 3 2 1 7 7 C 1.39882 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00147 * 195.34594 * 7 2 1 9 9 C 1.41031 * 120.00617 * 15.34043 * 7 2 1 10 10 C 1.40670 * 120.26213 * 25.55440 * 9 7 2 11 11 C 1.38006 * 119.76901 * 180.02562 * 10 9 7 12 12 N 1.39849 * 119.83952 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00148 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47179 * 180.02562 * 13 12 11 15 15 C 1.54631 * 111.03974 * 72.97723 * 14 13 12 16 16 C 1.51097 * 104.73156 * 142.66468 * 15 14 13 17 17 C 1.30535 * 111.10132 * 343.56515 * 16 15 14 18 18 C 1.51097 * 111.10316 * 359.97438 * 17 16 15 19 19 C 1.39597 * 120.32084 * 0.25713 * 11 10 9 20 20 C 1.38065 * 120.54921 * 359.48249 * 19 11 10 21 21 C 1.38733 * 120.21613 * 0.51638 * 20 19 11 22 22 N 1.38860 * 120.15897 * 179.72284 * 21 20 19 23 23 H 0.97005 * 119.99754 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.11452 * 0.04382 * 10 9 7 25 25 H 0.97003 * 119.99825 * 0.02562 * 12 11 10 26 26 H 1.08998 * 109.47008 * 59.99910 * 13 12 11 27 27 H 1.09009 * 109.46945 * 299.99983 * 13 12 11 28 28 H 1.09005 * 110.94345 * 308.98642 * 14 13 12 29 29 H 1.09002 * 110.38659 * 261.47524 * 15 14 13 30 30 H 1.09001 * 110.39043 * 23.84764 * 15 14 13 31 31 H 1.07998 * 124.45256 * 163.57942 * 16 15 14 32 32 H 1.07996 * 124.44652 * 180.02562 * 17 16 15 33 33 H 1.08997 * 110.38730 * 257.63035 * 18 17 16 34 34 H 1.08998 * 110.48271 * 135.29583 * 18 17 16 35 35 H 1.08002 * 119.72533 * 179.71903 * 19 11 10 36 36 H 1.08000 * 119.88850 * 180.25549 * 20 19 11 37 37 H 0.97005 * 120.00040 * 180.02562 * 22 21 20 38 38 H 0.97005 * 120.00211 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3856 2.1070 -1.3948 5 1 1.4971 2.6200 0.8025 6 1 3.5892 1.4120 0.5924 7 6 2.0084 -1.2115 -0.0005 8 1 3.0595 -1.2284 0.2470 9 6 1.3409 -2.4110 -0.3242 10 6 0.1931 -2.3865 -1.1370 11 6 -0.4524 -3.5663 -1.4469 12 7 -1.5939 -3.5436 -2.2545 13 6 -2.2822 -4.7938 -2.5852 14 6 -3.4898 -4.4913 -3.4747 15 6 -3.0438 -4.1086 -4.9049 16 6 -4.0814 -4.7304 -5.8103 17 6 -4.7749 -5.6370 -5.1770 18 6 -4.3150 -5.7713 -3.7441 19 6 0.0253 -4.7816 -0.9534 20 6 1.1537 -4.8215 -0.1588 21 6 1.8202 -3.6491 0.1668 22 7 2.9516 -3.6901 0.9707 23 1 -0.4850 0.8401 0.0004 24 1 -0.1815 -1.4477 -1.5175 25 1 -1.9299 -2.7000 -2.5956 26 1 -2.6182 -5.2772 -1.6679 27 1 -1.5977 -5.4562 -3.1153 28 1 -4.1107 -3.7101 -3.0362 29 1 -3.0369 -3.0251 -5.0234 30 1 -2.0576 -4.5209 -5.1183 31 1 -4.2296 -4.4605 -6.8454 32 1 -5.5722 -6.2158 -5.6195 33 1 -3.6912 -6.6575 -3.6269 34 1 -5.1713 -5.8189 -3.0715 35 1 -0.4900 -5.6986 -1.1982 36 1 1.5162 -5.7681 0.2138 37 1 3.4157 -2.8689 1.1972 38 1 3.2781 -4.5399 1.3058 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717403541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:36 Heat of formation + Delta-G solvation = 17.136598 kcal Electronic energy + Delta-G solvation = -18451.474298 eV Core-core repulsion = 15678.311388 eV Total energy + Delta-G solvation = -2773.162910 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10993 -39.38520 -36.68566 -35.32327 -33.63306 -31.29308 -30.87767 -29.06307 -28.02165 -26.57932 -25.08651 -22.98461 -21.45763 -21.00216 -19.63850 -18.86022 -17.86674 -17.24032 -17.03943 -16.56103 -16.50129 -16.07226 -15.24105 -14.67073 -14.42744 -14.19936 -13.68162 -13.62181 -13.58067 -13.13169 -12.98473 -12.87469 -12.72757 -12.52951 -12.11743 -12.05976 -12.01858 -11.87232 -11.64143 -11.28912 -11.14022 -10.93844 -9.76013 -9.39254 -9.12969 -8.48469 -7.28806 -5.99982 1.12848 1.40396 1.41577 1.52031 1.53355 1.66747 2.27743 2.90733 2.97172 3.71102 3.75298 3.78306 3.96243 3.98923 4.39951 4.42195 4.58990 4.64017 4.74655 4.84864 4.87028 4.89893 4.97321 5.09492 5.13147 5.24636 5.34808 5.38998 5.45431 5.64605 5.68655 5.90100 6.05148 6.07863 6.18505 6.29600 6.58036 6.98236 7.07418 7.14599 7.28073 7.48582 7.67793 8.51965 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.004881 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.850600 B = 5734.641274 C = 6712.492319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.492 4.492 8 H 0.074 0.926 9 C 0.060 3.940 10 C -0.227 4.227 11 C 0.173 3.827 12 N -0.758 5.758 13 C 0.152 3.848 14 C -0.099 4.099 15 C -0.098 4.098 16 C -0.176 4.176 17 C -0.166 4.166 18 C -0.093 4.093 19 C -0.260 4.260 20 C -0.158 4.158 21 C 0.069 3.931 22 N -0.879 5.879 23 H 0.279 0.721 24 H 0.099 0.901 25 H 0.388 0.612 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.432 -7.009 -7.106 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.252 4.252 11 C 0.072 3.928 12 N -0.392 5.392 13 C 0.027 3.973 14 C -0.118 4.118 15 C -0.136 4.136 16 C -0.193 4.193 17 C -0.184 4.184 18 C -0.130 4.130 19 C -0.284 4.284 20 C -0.182 4.182 21 C -0.033 4.033 22 N -0.423 5.423 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.221 0.779 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.735 -7.053 -7.132 12.082 hybrid contribution 0.487 1.185 0.200 1.297 sum -6.248 -5.868 -6.931 11.024 Atomic orbital electron populations 1.69972 1.08700 1.29325 1.38195 1.26570 0.95425 1.03892 0.92097 0.85295 0.79225 0.76910 0.78812 1.19452 1.19961 1.18145 1.19416 0.96957 0.91982 1.43960 0.90787 1.17372 0.93500 0.91568 0.92093 1.20509 1.02104 0.95355 1.07194 1.17640 0.88314 0.93645 0.93190 1.44399 1.29431 1.07908 1.57481 1.21109 0.92326 0.86694 0.97140 1.22188 0.95702 0.98978 0.94956 1.21436 0.98383 1.00616 0.93123 1.23424 0.97187 0.98741 0.99993 1.23455 1.00051 0.99032 0.95846 1.21363 0.99346 0.96953 0.95335 1.19927 1.02434 0.95025 1.10968 1.20052 0.98477 0.95347 1.04360 1.18032 0.92807 0.93676 0.98788 1.41682 1.31067 1.10132 1.59445 0.91100 0.88311 0.77854 0.93710 0.93577 0.90306 0.91698 0.91447 0.84594 0.83841 0.90026 0.90026 0.87590 0.87118 0.78224 0.78202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.22 10.88 21.82 0.24 -44.98 16 2 C 0.03 1.69 5.18 85.23 0.44 2.13 16 3 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.49 -26.66 8.50 23.35 0.20 -26.46 16 8 H 0.07 3.80 6.67 -2.91 -0.02 3.78 16 9 C 0.06 3.29 5.58 -21.18 -0.12 3.17 16 10 C -0.23 -12.32 8.50 22.81 0.19 -12.13 16 11 C 0.17 8.26 6.64 38.13 0.25 8.51 16 12 N -0.76 -29.62 5.68 -339.43 -1.93 -31.55 16 13 C 0.15 4.69 4.22 86.38 0.36 5.06 16 14 C -0.10 -2.46 3.16 -9.68 -0.03 -2.49 16 15 C -0.10 -2.36 6.33 30.53 0.19 -2.17 16 16 C -0.18 -3.48 10.78 26.25 0.28 -3.19 16 17 C -0.17 -3.01 10.78 26.25 0.28 -2.72 16 18 C -0.09 -1.84 6.38 30.54 0.19 -1.64 16 19 C -0.26 -11.81 9.31 22.56 0.21 -11.60 16 20 C -0.16 -7.21 9.86 22.35 0.22 -6.99 16 21 C 0.07 3.39 6.79 38.97 0.26 3.66 16 22 N -0.88 -36.00 8.98 -50.32 -0.45 -36.45 16 23 H 0.28 13.86 8.30 -92.70 -0.77 13.09 16 24 H 0.10 5.66 6.14 -2.91 -0.02 5.64 16 25 H 0.39 14.82 8.48 -92.71 -0.79 14.04 16 26 H 0.04 1.41 7.93 -2.39 -0.02 1.39 16 27 H 0.05 1.44 7.73 -2.38 -0.02 1.43 16 28 H 0.08 2.01 8.14 -2.38 -0.02 2.00 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.76 7.74 -2.39 -0.02 1.75 16 31 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.08 1.57 7.89 -2.39 -0.02 1.55 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 4.27 6.69 -2.91 -0.02 4.25 16 36 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.39 15.79 7.04 -92.70 -0.65 15.14 16 38 H 0.39 13.17 8.83 -92.70 -0.82 12.35 16 Total: -1.00 -61.52 310.50 1.67 -59.84 By element: Atomic # 1 Polarization: 59.56 SS G_CDS: -1.17 Total: 58.39 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 2.95 Total: -46.88 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -2.14 Total: -112.98 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -61.52 1.67 -59.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717403541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.981 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds