Wall clock time and date at job start Mon Mar 30 2020 07:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86797 * 120.00455 * 2 1 4 4 H 1.48500 * 109.47117 * 275.38905 * 3 2 1 5 5 H 1.48501 * 109.46864 * 35.38612 * 3 2 1 6 6 H 1.48503 * 109.47439 * 155.38598 * 3 2 1 7 7 C 1.39893 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 342.17398 * 7 2 1 9 9 C 1.41033 * 119.99924 * 162.18288 * 7 2 1 10 10 C 1.40661 * 120.26692 * 329.61071 * 9 7 2 11 11 C 1.38007 * 119.76785 * 179.69859 * 10 9 7 12 12 N 1.39856 * 119.83948 * 180.27560 * 11 10 9 13 13 C 1.46501 * 120.00155 * 179.97438 * 12 11 10 14 14 H 1.08995 * 115.55466 * 9.41716 * 13 12 11 15 15 C 1.53124 * 117.51181 * 223.68378 * 13 12 11 16 16 C 1.52459 * 117.51017 * 155.15448 * 13 12 11 17 17 C 1.53253 * 128.58886 * 349.84490 * 16 13 12 18 18 C 1.53884 * 86.88442 * 194.89122 * 17 16 13 19 19 C 1.53263 * 128.58364 * 225.04844 * 16 13 12 20 20 C 1.39592 * 120.32267 * 0.29841 * 11 10 9 21 21 C 1.38067 * 120.55086 * 359.97438 * 20 11 10 22 22 C 1.38732 * 120.21769 * 359.97438 * 21 20 11 23 23 N 1.38866 * 120.16418 * 180.02562 * 22 21 20 24 24 H 0.96997 * 119.99398 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.11479 * 359.97359 * 10 9 7 26 26 H 0.97003 * 119.99682 * 0.02562 * 12 11 10 27 27 H 1.09001 * 117.51277 * 359.97438 * 15 13 12 28 28 H 1.09001 * 117.51169 * 145.10820 * 15 13 12 29 29 H 1.08997 * 113.64947 * 309.38908 * 17 16 13 30 30 H 1.09005 * 113.64490 * 80.39233 * 17 16 13 31 31 H 1.09007 * 113.58949 * 270.39315 * 18 17 16 32 32 H 1.09005 * 113.58833 * 139.57629 * 18 17 16 33 33 H 1.09005 * 113.64373 * 279.61666 * 19 16 13 34 34 H 1.09007 * 113.64349 * 50.61187 * 19 16 13 35 35 H 1.07998 * 119.72986 * 179.97438 * 20 11 10 36 36 H 1.08001 * 119.88674 * 179.97438 * 21 20 11 37 37 H 0.96996 * 119.99753 * 0.02562 * 23 22 21 38 38 H 0.96997 * 119.99990 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3768 2.1120 -1.3939 5 1 1.5021 2.6170 0.8108 6 1 3.5930 1.4099 0.5831 7 6 2.0084 -1.2115 -0.0005 8 1 1.5072 -2.1245 0.2854 9 6 3.3680 -1.2407 -0.3743 10 6 3.8669 -0.3137 -1.3071 11 6 5.2004 -0.3476 -1.6608 12 7 5.6993 0.5771 -2.5838 13 6 7.1145 0.5447 -2.9614 14 1 7.6758 -0.3201 -2.6077 15 6 7.8549 1.8824 -3.0456 16 6 7.4944 1.1237 -4.3196 17 6 6.5735 1.5597 -5.4643 18 6 7.8245 1.5557 -6.3603 19 6 8.4322 0.5369 -5.3803 20 6 6.0537 -1.3006 -1.1021 21 6 5.5769 -2.2204 -0.1894 22 6 4.2406 -2.2062 0.1830 23 7 3.7623 -3.1315 1.1014 24 1 -0.4849 0.8401 0.0004 25 1 3.2096 0.4249 -1.7418 26 1 5.1084 1.2404 -2.9735 27 1 7.2888 2.7863 -2.8206 28 1 8.9034 1.8972 -2.7482 29 1 5.8347 0.8078 -5.7417 30 1 6.1396 2.5497 -5.3235 31 1 8.3506 2.5103 -6.3792 32 1 7.6464 1.1502 -7.3564 33 1 9.4886 0.7069 -5.1720 34 1 8.2108 -0.4998 -5.6342 35 1 7.0956 -1.3187 -1.3860 36 1 6.2465 -2.9534 0.2359 37 1 4.3631 -3.7896 1.4845 38 1 2.8276 -3.1191 1.3604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721300627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:02 Heat of formation + Delta-G solvation = 71.403016 kcal Electronic energy + Delta-G solvation = -18718.549543 eV Core-core repulsion = 15947.739801 eV Total energy + Delta-G solvation = -2770.809742 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.53595 -38.04709 -35.35970 -33.40342 -33.07219 -30.64454 -30.23169 -26.30605 -25.65923 -24.73946 -23.00976 -22.09191 -21.16511 -19.58702 -18.26230 -17.25396 -16.50105 -16.01083 -15.33621 -15.25538 -15.12638 -14.72407 -14.06349 -13.09970 -13.02314 -12.74233 -12.57698 -12.33385 -12.13402 -11.99148 -11.68438 -11.51425 -11.25915 -11.19910 -10.89734 -10.72233 -10.50498 -10.26688 -9.86995 -9.71502 -9.51469 -9.36568 -9.02355 -7.82357 -7.50396 -6.81037 -5.80432 -4.20242 2.75691 3.00270 3.20078 3.34535 3.44308 3.93043 3.98862 4.11219 4.65054 4.65625 4.75479 4.81043 5.03137 5.03834 5.27880 5.41289 5.60916 5.65410 5.71824 5.76324 5.84555 5.85047 5.99021 6.11029 6.13525 6.32652 6.38075 6.41131 6.73403 6.82679 7.16164 7.28375 7.41419 7.52989 7.72922 7.97149 8.29881 8.44270 8.57826 8.65474 8.88840 9.07043 9.13765 10.22383 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.005973 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.233168 B = 4686.845238 C = 5498.361164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.245 1.245 7 C -0.451 4.451 8 H 0.087 0.913 9 C 0.081 3.919 10 C -0.272 4.272 11 C 0.198 3.802 12 N -0.728 5.728 13 C 0.131 3.869 14 H 0.126 0.874 15 C -0.178 4.178 16 C -0.184 4.184 17 C -0.099 4.099 18 C -0.136 4.136 19 C -0.096 4.096 20 C -0.255 4.255 21 C -0.144 4.144 22 C 0.099 3.901 23 N -0.885 5.885 24 H 0.281 0.719 25 H 0.099 0.901 26 H 0.389 0.611 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.377 0.623 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.371 2.612 -6.728 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.132 4.132 3 Si 0.742 3.258 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.168 1.168 7 C -0.480 4.480 8 H 0.105 0.895 9 C 0.076 3.924 10 C -0.296 4.296 11 C 0.099 3.901 12 N -0.358 5.358 13 C 0.022 3.978 14 H 0.144 0.856 15 C -0.217 4.217 16 C -0.186 4.186 17 C -0.136 4.136 18 C -0.173 4.173 19 C -0.134 4.134 20 C -0.278 4.278 21 C -0.169 4.169 22 C -0.003 4.003 23 N -0.428 5.428 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.223 0.777 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.202 0.798 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 12.234 2.677 -6.736 14.220 hybrid contribution -0.090 0.939 0.051 0.945 sum 12.144 3.617 -6.686 14.326 Atomic orbital electron populations 1.69736 1.07952 1.29775 1.37259 1.26044 0.94613 1.01434 0.91086 0.86245 0.81266 0.79925 0.78325 1.20318 1.22571 1.16796 1.19090 0.93030 0.95672 1.40248 0.89545 1.17115 0.92632 0.91290 0.91382 1.20197 0.93507 1.08051 1.07804 1.17320 0.92305 0.89972 0.90484 1.43805 1.06509 1.36927 1.48538 1.21260 0.84683 0.96031 0.95844 0.85618 1.23440 1.01278 0.98035 0.98978 1.22850 1.01121 1.05506 0.89086 1.22350 0.96012 1.01090 0.94153 1.22726 0.97669 0.99511 0.97442 1.22402 0.97809 0.98740 0.94410 1.19648 0.97384 1.02543 1.08234 1.19796 0.93405 1.01302 1.02350 1.17759 0.91974 0.95340 0.95187 1.41867 1.12605 1.37521 1.50759 0.90881 0.88355 0.77736 0.88950 0.88682 0.89697 0.91889 0.90452 0.91644 0.91724 0.89852 0.88936 0.89086 0.79790 0.77837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.34 13.93 55.55 0.77 -21.56 16 2 C 0.08 2.27 5.41 -17.33 -0.09 2.18 16 3 Si 0.91 21.72 24.52 -169.99 -4.17 17.55 16 4 H -0.28 -6.39 6.72 56.52 0.38 -6.01 16 5 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.24 -6.04 6.86 56.52 0.39 -5.66 16 7 C -0.45 -12.16 8.91 -37.90 -0.34 -12.49 16 8 H 0.09 2.39 7.01 -52.49 -0.37 2.03 16 9 C 0.08 2.08 5.11 -106.65 -0.54 1.54 16 10 C -0.27 -6.67 6.97 -38.75 -0.27 -6.94 16 11 C 0.20 4.37 6.64 -83.78 -0.56 3.81 16 12 N -0.73 -13.49 5.73 -52.38 -0.30 -13.79 16 13 C 0.13 2.00 6.32 -68.14 -0.43 1.57 16 14 H 0.13 1.92 5.88 -51.93 -0.31 1.62 16 15 C -0.18 -2.31 10.46 -26.88 -0.28 -2.59 16 16 C -0.18 -2.34 3.02 -154.73 -0.47 -2.81 16 17 C -0.10 -1.18 8.08 -26.14 -0.21 -1.40 16 18 C -0.14 -1.37 8.08 -25.81 -0.21 -1.58 16 19 C -0.10 -1.03 8.10 -26.14 -0.21 -1.25 16 20 C -0.25 -5.41 9.32 -39.14 -0.36 -5.77 16 21 C -0.14 -3.09 9.86 -39.46 -0.39 -3.48 16 22 C 0.10 2.30 6.79 -83.22 -0.56 1.74 16 23 N -0.89 -17.56 8.98 32.75 0.29 -17.27 16 24 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 25 H 0.10 2.45 4.77 -52.48 -0.25 2.20 16 26 H 0.39 6.99 8.83 -40.82 -0.36 6.63 16 27 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.74 5.86 -52.49 -0.31 1.44 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.38 6.21 8.83 -40.82 -0.36 5.85 16 38 H 0.39 7.87 7.12 -40.82 -0.29 7.58 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -28.25 306.71 -8.93 -37.18 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -5.22 Total: 20.75 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -4.93 Total: -27.49 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.77 Total: -52.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.17 Total: 17.55 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.25 -8.93 -37.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721300627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.584 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds