Wall clock time and date at job start Mon Mar 30 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86797 * 120.00455 * 2 1 4 4 H 1.48500 * 109.47117 * 275.38905 * 3 2 1 5 5 H 1.48501 * 109.46864 * 35.38612 * 3 2 1 6 6 H 1.48503 * 109.47439 * 155.38598 * 3 2 1 7 7 C 1.39893 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 342.17398 * 7 2 1 9 9 C 1.41033 * 119.99924 * 162.18288 * 7 2 1 10 10 C 1.40661 * 120.26692 * 329.61071 * 9 7 2 11 11 C 1.38007 * 119.76785 * 179.69859 * 10 9 7 12 12 N 1.39856 * 119.83948 * 180.27560 * 11 10 9 13 13 C 1.46501 * 120.00155 * 179.97438 * 12 11 10 14 14 H 1.08995 * 115.55466 * 9.41716 * 13 12 11 15 15 C 1.53124 * 117.51181 * 223.68378 * 13 12 11 16 16 C 1.52459 * 117.51017 * 155.15448 * 13 12 11 17 17 C 1.53253 * 128.58886 * 349.84490 * 16 13 12 18 18 C 1.53884 * 86.88442 * 194.89122 * 17 16 13 19 19 C 1.53263 * 128.58364 * 225.04844 * 16 13 12 20 20 C 1.39592 * 120.32267 * 0.29841 * 11 10 9 21 21 C 1.38067 * 120.55086 * 359.97438 * 20 11 10 22 22 C 1.38732 * 120.21769 * 359.97438 * 21 20 11 23 23 N 1.38866 * 120.16418 * 180.02562 * 22 21 20 24 24 H 0.96997 * 119.99398 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.11479 * 359.97359 * 10 9 7 26 26 H 0.97003 * 119.99682 * 0.02562 * 12 11 10 27 27 H 1.09001 * 117.51277 * 359.97438 * 15 13 12 28 28 H 1.09001 * 117.51169 * 145.10820 * 15 13 12 29 29 H 1.08997 * 113.64947 * 309.38908 * 17 16 13 30 30 H 1.09005 * 113.64490 * 80.39233 * 17 16 13 31 31 H 1.09007 * 113.58949 * 270.39315 * 18 17 16 32 32 H 1.09005 * 113.58833 * 139.57629 * 18 17 16 33 33 H 1.09005 * 113.64373 * 279.61666 * 19 16 13 34 34 H 1.09007 * 113.64349 * 50.61187 * 19 16 13 35 35 H 1.07998 * 119.72986 * 179.97438 * 20 11 10 36 36 H 1.08001 * 119.88674 * 179.97438 * 21 20 11 37 37 H 0.96996 * 119.99753 * 0.02562 * 23 22 21 38 38 H 0.96997 * 119.99990 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3768 2.1120 -1.3939 5 1 1.5021 2.6170 0.8108 6 1 3.5930 1.4099 0.5831 7 6 2.0084 -1.2115 -0.0005 8 1 1.5072 -2.1245 0.2854 9 6 3.3680 -1.2407 -0.3743 10 6 3.8669 -0.3137 -1.3071 11 6 5.2004 -0.3476 -1.6608 12 7 5.6993 0.5771 -2.5838 13 6 7.1145 0.5447 -2.9614 14 1 7.6758 -0.3201 -2.6077 15 6 7.8549 1.8824 -3.0456 16 6 7.4944 1.1237 -4.3196 17 6 6.5735 1.5597 -5.4643 18 6 7.8245 1.5557 -6.3603 19 6 8.4322 0.5369 -5.3803 20 6 6.0537 -1.3006 -1.1021 21 6 5.5769 -2.2204 -0.1894 22 6 4.2406 -2.2062 0.1830 23 7 3.7623 -3.1315 1.1014 24 1 -0.4849 0.8401 0.0004 25 1 3.2096 0.4249 -1.7418 26 1 5.1084 1.2404 -2.9735 27 1 7.2888 2.7863 -2.8206 28 1 8.9034 1.8972 -2.7482 29 1 5.8347 0.8078 -5.7417 30 1 6.1396 2.5497 -5.3235 31 1 8.3506 2.5103 -6.3792 32 1 7.6464 1.1502 -7.3564 33 1 9.4886 0.7069 -5.1720 34 1 8.2108 -0.4998 -5.6342 35 1 7.0956 -1.3187 -1.3860 36 1 6.2465 -2.9534 0.2359 37 1 4.3631 -3.7896 1.4845 38 1 2.8276 -3.1191 1.3604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721300627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:01 Heat of formation + Delta-G solvation = 54.146864 kcal Electronic energy + Delta-G solvation = -18719.297826 eV Core-core repulsion = 15947.739801 eV Total energy + Delta-G solvation = -2771.558025 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63938 -39.69029 -36.77880 -35.31661 -34.42826 -32.20806 -31.98865 -27.99379 -26.72944 -26.38996 -23.88047 -23.71402 -22.64717 -21.25469 -19.34988 -19.01473 -18.07841 -17.64538 -16.89820 -16.58293 -16.36919 -16.09028 -15.45620 -14.95296 -14.59471 -14.32364 -14.06973 -13.71465 -13.56582 -13.26178 -13.12887 -12.93609 -12.59047 -12.47550 -12.39643 -12.32924 -12.06447 -11.69777 -11.42889 -11.13829 -10.94814 -10.85889 -10.59789 -9.39086 -9.27896 -8.79212 -7.48961 -6.16071 0.90761 1.18437 1.27335 1.50800 1.51902 2.18317 2.61179 2.72894 2.95115 3.64682 3.67806 3.69438 3.81542 3.94098 3.94929 4.06869 4.40375 4.52603 4.53854 4.76562 4.83908 4.87097 4.89588 4.92597 4.97203 5.07365 5.11294 5.15754 5.38061 5.43997 5.47538 5.52799 5.67242 5.78667 5.97530 6.19030 6.33486 6.66331 6.86509 6.95577 7.06729 7.29775 7.58194 8.29660 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.005973 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.233168 B = 4686.845238 C = 5498.361164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.049 3.951 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.474 4.474 8 H 0.063 0.937 9 C 0.052 3.948 10 C -0.283 4.283 11 C 0.191 3.809 12 N -0.727 5.727 13 C 0.099 3.901 14 H 0.128 0.872 15 C -0.164 4.164 16 C -0.177 4.177 17 C -0.108 4.108 18 C -0.125 4.125 19 C -0.092 4.092 20 C -0.243 4.243 21 C -0.142 4.142 22 C 0.084 3.916 23 N -0.877 5.877 24 H 0.287 0.713 25 H 0.088 0.912 26 H 0.389 0.611 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.394 0.606 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.767 3.126 -7.769 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.163 4.163 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.046 3.954 10 C -0.307 4.307 11 C 0.091 3.909 12 N -0.356 5.356 13 C -0.008 4.008 14 H 0.145 0.855 15 C -0.203 4.203 16 C -0.178 4.178 17 C -0.146 4.146 18 C -0.163 4.163 19 C -0.130 4.130 20 C -0.267 4.267 21 C -0.167 4.167 22 C -0.019 4.019 23 N -0.420 5.420 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.222 0.778 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.223 0.777 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 15.671 3.189 -7.793 17.790 hybrid contribution -0.922 0.695 0.290 1.190 sum 14.749 3.883 -7.503 16.997 Atomic orbital electron populations 1.69768 1.08801 1.30606 1.39901 1.26589 0.95127 1.03550 0.91046 0.85449 0.79341 0.77464 0.78455 1.19632 1.21538 1.18421 1.19098 0.94141 0.95168 1.42137 0.91910 1.17286 0.92527 0.93008 0.92549 1.20283 0.94723 1.07761 1.07959 1.17424 0.91627 0.90845 0.91027 1.43842 1.08093 1.36043 1.47649 1.21486 0.82982 0.97636 0.98699 0.85473 1.23453 1.01917 0.96339 0.98596 1.23006 1.01699 1.04461 0.88675 1.22425 0.96684 1.00706 0.94773 1.22702 0.96064 0.99933 0.97561 1.22445 0.98318 0.98861 0.93336 1.20103 0.98706 1.01154 1.06717 1.20205 0.93048 1.01644 1.01773 1.17975 0.92604 0.95452 0.95833 1.41784 1.12837 1.37317 1.50103 0.90321 0.89467 0.77762 0.89383 0.86566 0.90806 0.91974 0.89327 0.90504 0.90125 0.89844 0.85935 0.85804 0.77732 0.78172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.77 13.93 21.82 0.30 -48.47 16 2 C 0.05 2.71 5.41 85.23 0.46 3.17 16 3 Si 0.97 45.96 24.52 68.60 1.68 47.64 16 4 H -0.27 -12.34 6.72 99.48 0.67 -11.67 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -12.84 6.86 99.48 0.68 -12.16 16 7 C -0.47 -26.67 8.91 23.36 0.21 -26.46 16 8 H 0.06 3.69 7.01 -2.91 -0.02 3.67 16 9 C 0.05 2.69 5.11 -21.18 -0.11 2.58 16 10 C -0.28 -13.97 6.97 22.81 0.16 -13.81 16 11 C 0.19 8.20 6.64 38.13 0.25 8.45 16 12 N -0.73 -25.83 5.73 -319.63 -1.83 -27.66 16 13 C 0.10 2.76 6.32 44.85 0.28 3.05 16 14 H 0.13 3.46 5.88 -2.39 -0.01 3.45 16 15 C -0.16 -3.73 10.46 30.50 0.32 -3.42 16 16 C -0.18 -3.99 3.02 -52.32 -0.16 -4.14 16 17 C -0.11 -2.36 8.08 30.98 0.25 -2.11 16 18 C -0.13 -2.09 8.08 31.19 0.25 -1.84 16 19 C -0.09 -1.65 8.10 30.98 0.25 -1.40 16 20 C -0.24 -9.66 9.32 22.56 0.21 -9.45 16 21 C -0.14 -5.74 9.86 22.35 0.22 -5.52 16 22 C 0.08 3.85 6.79 38.97 0.26 4.12 16 23 N -0.88 -34.36 8.98 -50.31 -0.45 -34.82 16 24 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 25 H 0.09 4.41 4.77 -2.91 -0.01 4.40 16 26 H 0.39 13.65 8.83 -92.71 -0.82 12.83 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.12 4.11 5.86 -2.91 -0.02 4.10 16 36 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.39 12.36 8.83 -92.71 -0.82 11.54 16 38 H 0.39 15.96 7.12 -92.71 -0.66 15.30 16 Total: -1.00 -61.67 306.71 1.31 -60.35 By element: Atomic # 1 Polarization: 50.98 SS G_CDS: -1.25 Total: 49.73 kcal Atomic # 6 Polarization: -49.65 SS G_CDS: 2.87 Total: -46.78 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -1.98 Total: -110.94 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.68 Total: 47.64 kcal Total: -61.67 1.31 -60.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721300627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.498 kcal (2) G-P(sol) polarization free energy of solvation -61.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds