Wall clock time and date at job start Mon Mar 30 2020 07:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47529 * 2 1 4 4 C 1.50704 * 109.47211 * 240.00021 * 2 1 3 5 5 H 1.08005 * 119.99992 * 240.00012 * 4 2 1 6 6 C 1.37881 * 119.99717 * 60.00057 * 4 2 1 7 7 N 1.31504 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99675 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47256 * 59.99609 * 8 6 4 10 10 H 1.48501 * 109.47147 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47083 * 299.99667 * 8 6 4 12 12 N 1.46498 * 109.47372 * 120.00066 * 2 1 3 13 13 N 1.40099 * 120.00050 * 269.99922 * 12 2 1 14 14 C 1.29749 * 120.00169 * 174.57831 * 13 12 2 15 15 C 1.51488 * 121.18736 * 4.16968 * 14 13 12 16 16 C 1.53024 * 107.57759 * 222.33523 * 15 14 13 17 17 C 1.52627 * 109.52035 * 296.31285 * 16 15 14 18 18 C 1.50412 * 111.28194 * 54.59312 * 17 16 15 19 19 C 1.38366 * 119.10853 * 157.49374 * 18 17 16 20 20 C 1.38210 * 120.34988 * 179.47035 * 19 18 17 21 21 C 1.38397 * 120.45685 * 0.02562 * 20 19 18 22 22 C 1.37946 * 119.93244 * 0.11238 * 21 20 19 23 23 C 1.39419 * 121.61802 * 337.19947 * 18 17 16 24 24 H 1.08994 * 109.46991 * 60.00043 * 1 2 3 25 25 H 1.09009 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47006 * 299.99491 * 1 2 3 27 27 H 0.97002 * 119.99828 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00052 * 89.99961 * 12 2 1 29 29 H 1.09004 * 109.87544 * 341.89634 * 15 14 13 30 30 H 1.08987 * 109.87779 * 102.97229 * 15 14 13 31 31 H 1.08990 * 109.52124 * 176.23465 * 16 15 14 32 32 H 1.09002 * 109.32507 * 56.27020 * 16 15 14 33 33 H 1.09000 * 109.11489 * 294.12924 * 17 16 15 34 34 H 1.09001 * 109.06427 * 175.02449 * 17 16 15 35 35 H 1.07995 * 119.82334 * 359.48192 * 19 18 17 36 36 H 1.08004 * 119.77212 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.03048 * 180.14545 * 21 20 19 38 38 H 1.08005 * 120.10280 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0183 -0.6906 1.1961 13 7 2.2519 0.0299 2.3747 14 6 2.5829 -0.5952 3.4625 15 6 2.8156 -2.0921 3.4672 16 6 2.1583 -2.6580 4.7278 17 6 2.8493 -2.0874 5.9633 18 6 2.8607 -0.5835 5.9368 19 6 2.9999 0.1097 7.1262 20 6 3.0247 1.4915 7.1303 21 6 2.9101 2.1988 5.9463 22 6 2.7678 1.5232 4.7520 23 6 2.7406 0.1274 4.7435 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7081 1.1608 -3.4844 28 1 2.1800 -1.6467 1.1721 29 1 2.3647 -2.5400 2.5816 30 1 3.8852 -2.3008 3.4855 31 1 2.2490 -3.7441 4.7296 32 1 1.1041 -2.3811 4.7403 33 1 3.8760 -2.4516 5.9983 34 1 2.3204 -2.4247 6.8547 35 1 3.0899 -0.4320 8.0561 36 1 3.1333 2.0231 8.0642 37 1 2.9327 3.2785 5.9572 38 1 2.6778 2.0724 3.8264 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:04 Heat of formation + Delta-G solvation = 49.949853 kcal Electronic energy + Delta-G solvation = -18559.290561 eV Core-core repulsion = 15787.550540 eV Total energy + Delta-G solvation = -2771.740021 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.67251 -36.89796 -35.23419 -33.84733 -31.82078 -30.24693 -30.14823 -27.75336 -26.15906 -25.17674 -22.77836 -22.67444 -21.00039 -20.17088 -18.57954 -17.21529 -16.01170 -15.68050 -15.41230 -14.90672 -14.72414 -13.99821 -13.66019 -13.42361 -13.19662 -12.94685 -12.73259 -12.52328 -12.16740 -12.00927 -11.42778 -11.30856 -11.08193 -11.00164 -10.79946 -10.78299 -10.55053 -10.41860 -10.23364 -10.16669 -9.27872 -9.03605 -8.73452 -8.53531 -8.46352 -6.72830 -6.14331 -4.22891 1.29131 1.57605 3.01770 3.24892 3.29666 3.31121 3.80280 4.09874 4.36097 4.74386 4.89287 5.02900 5.15971 5.17457 5.17954 5.22413 5.39228 5.53718 5.65884 5.75025 5.85794 5.93971 5.95638 6.12273 6.20345 6.34130 6.35543 6.57009 6.67109 6.79375 6.82476 6.99711 7.08782 7.15784 7.20696 7.56908 7.77060 7.85416 8.14956 8.29911 8.84407 9.33352 9.43982 10.91420 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.004430 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.810294 B = 6319.061298 C = 6826.333466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.297 3.703 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.622 5.622 13 N -0.190 5.190 14 C 0.014 3.986 15 C -0.099 4.099 16 C -0.110 4.110 17 C -0.076 4.076 18 C -0.077 4.077 19 C -0.123 4.123 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.098 4.098 23 C 0.005 3.995 24 H 0.090 0.910 25 H 0.025 0.975 26 H 0.012 0.988 27 H 0.265 0.735 28 H 0.370 0.630 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -3.292 16.826 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.195 3.805 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.359 5.359 13 N -0.002 5.002 14 C -0.174 4.174 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.113 4.113 18 C -0.080 4.080 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.118 4.118 23 C 0.003 3.997 24 H 0.109 0.891 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.208 0.792 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.798 -2.169 16.032 16.418 hybrid contribution 0.508 -1.540 -0.727 1.777 sum 3.307 -3.709 15.305 16.091 Atomic orbital electron populations 1.22199 0.98974 0.99168 1.00534 1.18538 0.90111 0.93580 0.78314 0.94062 1.21194 1.32327 1.13303 0.90247 0.92312 1.24849 0.94801 0.94983 0.98923 1.69876 1.35916 1.22516 1.24026 0.86489 0.79188 0.79605 0.81713 1.20173 1.21058 1.20172 1.49073 1.72039 1.07891 1.06902 1.74014 1.05179 1.27405 0.93589 1.22530 1.10564 0.92721 0.91574 1.20911 1.01085 0.93416 0.98475 1.21345 1.00158 0.99534 0.93767 1.20322 1.01172 0.91156 0.98623 1.19790 1.00666 0.95313 0.92224 1.20898 1.01959 0.94219 0.97020 1.21040 1.01753 0.94161 0.97880 1.21073 1.01010 0.99690 0.92532 1.21385 0.98434 0.93482 0.98532 1.18092 0.99008 0.92361 0.90268 0.89142 0.95566 0.96885 0.92496 0.79243 0.91161 0.90796 0.91517 0.91632 0.90773 0.90983 0.86433 0.86617 0.86264 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.29 37.16 0.35 -3.37 16 2 C 0.30 7.63 3.23 -69.08 -0.22 7.41 16 3 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.53 -14.34 8.74 -34.44 -0.30 -14.64 16 5 H 0.06 1.55 7.79 -52.48 -0.41 1.14 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.62 -13.97 5.99 -5.88 -0.04 -14.01 16 13 N -0.19 -4.00 10.76 35.40 0.38 -3.61 16 14 C 0.01 0.25 6.75 -79.12 -0.53 -0.28 16 15 C -0.10 -1.46 5.78 -27.48 -0.16 -1.62 16 16 C -0.11 -1.32 5.88 -26.91 -0.16 -1.48 16 17 C -0.08 -0.83 5.70 -28.21 -0.16 -0.99 16 18 C -0.08 -1.03 5.78 -104.28 -0.60 -1.64 16 19 C -0.12 -1.43 9.66 -39.54 -0.38 -1.82 16 20 C -0.13 -1.49 10.03 -39.53 -0.40 -1.89 16 21 C -0.12 -1.61 10.05 -39.63 -0.40 -2.01 16 22 C -0.10 -1.53 9.59 -39.17 -0.38 -1.91 16 23 C 0.00 0.08 5.82 -104.98 -0.61 -0.53 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 28 H 0.37 7.73 6.26 -182.60 -1.14 6.59 16 29 H 0.07 1.08 5.92 -51.93 -0.31 0.78 16 30 H 0.07 1.03 8.14 -51.94 -0.42 0.60 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 2.18 7.63 -52.48 -0.40 1.77 16 LS Contribution 311.76 15.07 4.70 4.70 Total: -1.00 -28.62 311.76 -9.76 -38.38 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.36 Total: 5.91 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -4.05 Total: -23.04 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.97 Total: -41.72 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.62 -9.76 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.326 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds