Wall clock time and date at job start Mon Mar 30 2020 07:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47529 * 2 1 4 4 C 1.50704 * 109.47211 * 240.00021 * 2 1 3 5 5 H 1.08005 * 119.99992 * 240.00012 * 4 2 1 6 6 C 1.37881 * 119.99717 * 60.00057 * 4 2 1 7 7 N 1.31504 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99675 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47256 * 59.99609 * 8 6 4 10 10 H 1.48501 * 109.47147 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47083 * 299.99667 * 8 6 4 12 12 N 1.46498 * 109.47372 * 120.00066 * 2 1 3 13 13 N 1.40099 * 120.00050 * 269.99922 * 12 2 1 14 14 C 1.29749 * 120.00169 * 174.57831 * 13 12 2 15 15 C 1.51488 * 121.18736 * 4.16968 * 14 13 12 16 16 C 1.53024 * 107.57759 * 222.33523 * 15 14 13 17 17 C 1.52627 * 109.52035 * 296.31285 * 16 15 14 18 18 C 1.50412 * 111.28194 * 54.59312 * 17 16 15 19 19 C 1.38366 * 119.10853 * 157.49374 * 18 17 16 20 20 C 1.38210 * 120.34988 * 179.47035 * 19 18 17 21 21 C 1.38397 * 120.45685 * 0.02562 * 20 19 18 22 22 C 1.37946 * 119.93244 * 0.11238 * 21 20 19 23 23 C 1.39419 * 121.61802 * 337.19947 * 18 17 16 24 24 H 1.08994 * 109.46991 * 60.00043 * 1 2 3 25 25 H 1.09009 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47006 * 299.99491 * 1 2 3 27 27 H 0.97002 * 119.99828 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00052 * 89.99961 * 12 2 1 29 29 H 1.09004 * 109.87544 * 341.89634 * 15 14 13 30 30 H 1.08987 * 109.87779 * 102.97229 * 15 14 13 31 31 H 1.08990 * 109.52124 * 176.23465 * 16 15 14 32 32 H 1.09002 * 109.32507 * 56.27020 * 16 15 14 33 33 H 1.09000 * 109.11489 * 294.12924 * 17 16 15 34 34 H 1.09001 * 109.06427 * 175.02449 * 17 16 15 35 35 H 1.07995 * 119.82334 * 359.48192 * 19 18 17 36 36 H 1.08004 * 119.77212 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.03048 * 180.14545 * 21 20 19 38 38 H 1.08005 * 120.10280 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0183 -0.6906 1.1961 13 7 2.2519 0.0299 2.3747 14 6 2.5829 -0.5952 3.4625 15 6 2.8156 -2.0921 3.4672 16 6 2.1583 -2.6580 4.7278 17 6 2.8493 -2.0874 5.9633 18 6 2.8607 -0.5835 5.9368 19 6 2.9999 0.1097 7.1262 20 6 3.0247 1.4915 7.1303 21 6 2.9101 2.1988 5.9463 22 6 2.7678 1.5232 4.7520 23 6 2.7406 0.1274 4.7435 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7081 1.1608 -3.4844 28 1 2.1800 -1.6467 1.1721 29 1 2.3647 -2.5400 2.5816 30 1 3.8852 -2.3008 3.4855 31 1 2.2490 -3.7441 4.7296 32 1 1.1041 -2.3811 4.7403 33 1 3.8760 -2.4516 5.9983 34 1 2.3204 -2.4247 6.8547 35 1 3.0899 -0.4320 8.0561 36 1 3.1333 2.0231 8.0642 37 1 2.9327 3.2785 5.9572 38 1 2.6778 2.0724 3.8264 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:50 Heat of formation + Delta-G solvation = 34.629170 kcal Electronic energy + Delta-G solvation = -18559.954916 eV Core-core repulsion = 15787.550540 eV Total energy + Delta-G solvation = -2772.404375 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.76982 -38.32555 -36.67123 -35.40997 -33.47932 -31.64944 -31.25206 -29.17267 -27.64020 -27.17251 -23.91586 -23.76133 -22.49042 -21.68285 -19.89287 -18.80426 -17.61481 -17.01955 -16.75965 -16.36224 -15.84563 -15.51642 -14.94018 -14.60835 -14.52939 -14.29984 -14.11955 -13.96885 -13.61138 -13.20868 -13.12918 -12.90461 -12.72825 -12.45517 -12.26548 -12.19414 -12.08893 -11.87779 -11.77754 -11.53540 -11.12023 -10.63446 -10.53975 -9.91340 -9.52932 -8.35213 -8.17510 -6.37168 0.15124 0.54927 1.41202 1.43468 1.51454 1.71819 2.18816 2.46889 3.01406 3.09147 3.66385 3.84127 3.94377 4.15158 4.16266 4.29256 4.35120 4.54888 4.57895 4.70763 4.76163 4.79931 4.92253 4.95589 5.02709 5.09046 5.12468 5.15984 5.28736 5.32869 5.37850 5.49181 5.65481 5.67798 5.71863 5.81117 5.92167 6.18119 6.19006 6.40517 6.82406 7.34533 7.78846 8.85581 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.004430 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.810294 B = 6319.061298 C = 6826.333466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.308 3.692 3 H -0.003 1.003 4 C -0.549 4.549 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.640 5.640 13 N -0.249 5.249 14 C 0.046 3.954 15 C -0.105 4.105 16 C -0.104 4.104 17 C -0.075 4.075 18 C -0.073 4.073 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.039 4.039 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.013 0.987 27 H 0.267 0.733 28 H 0.373 0.627 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -5.032 19.863 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.204 3.796 3 H 0.015 0.985 4 C -0.589 4.589 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.198 1.198 12 N -0.378 5.378 13 N -0.058 5.058 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.142 4.142 17 C -0.112 4.112 18 C -0.076 4.076 19 C -0.138 4.138 20 C -0.134 4.134 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.042 4.042 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.212 0.788 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.155 0.845 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.768 -3.910 19.087 19.845 hybrid contribution 0.283 -0.936 -1.334 1.654 sum 4.051 -4.847 17.753 18.843 Atomic orbital electron populations 1.22003 0.98828 0.98986 0.99481 1.18102 0.90200 0.91490 0.79835 0.98492 1.21478 1.32663 1.13541 0.91170 0.92189 1.25725 0.94803 0.95620 1.01941 1.70011 1.36738 1.23729 1.24782 0.85409 0.78553 0.78702 0.77728 1.19146 1.20498 1.19829 1.48503 1.74729 1.07653 1.06938 1.74057 1.09583 1.28082 0.94121 1.23368 1.05004 0.94695 0.91319 1.21061 1.02170 0.91310 0.99924 1.21348 0.99034 1.01218 0.92649 1.20437 1.02550 0.89199 0.98982 1.20171 0.98899 0.96890 0.91604 1.21363 1.00304 0.94467 0.97703 1.21520 0.98847 0.94573 0.98459 1.21323 1.00793 1.00835 0.92137 1.21371 0.99938 0.93842 0.98819 1.18290 1.02637 0.92722 0.90512 0.91152 0.95100 0.96744 0.92346 0.78821 0.92285 0.89437 0.88638 0.93044 0.88882 0.87928 0.82576 0.83015 0.84493 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 9.29 71.98 0.67 -6.36 16 2 C 0.31 16.89 3.23 44.25 0.14 17.03 16 3 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 4 C -0.55 -30.84 8.74 25.60 0.22 -30.62 16 5 H 0.06 3.26 7.79 -2.91 -0.02 3.24 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -52.89 11.32 21.45 0.24 -52.65 16 8 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.64 -30.66 5.99 -172.53 -1.03 -31.69 16 13 N -0.25 -11.23 10.76 -41.91 -0.45 -11.68 16 14 C 0.05 1.68 6.75 45.68 0.31 1.99 16 15 C -0.10 -3.04 5.78 30.11 0.17 -2.86 16 16 C -0.10 -2.23 5.88 30.48 0.18 -2.06 16 17 C -0.08 -1.32 5.70 29.63 0.17 -1.15 16 18 C -0.07 -1.73 5.78 -19.64 -0.11 -1.84 16 19 C -0.12 -2.25 9.66 22.29 0.22 -2.03 16 20 C -0.12 -2.19 10.03 22.30 0.22 -1.97 16 21 C -0.13 -3.24 10.05 22.24 0.22 -3.01 16 22 C -0.12 -3.83 9.59 22.53 0.22 -3.61 16 23 C -0.04 -1.25 5.82 -20.10 -0.12 -1.37 16 24 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 25 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.37 16.51 6.26 -213.32 -1.34 15.18 16 29 H 0.06 1.85 5.92 -2.38 -0.01 1.84 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 35 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.10 3.77 7.63 -2.91 -0.02 3.75 16 Total: -1.00 -66.24 311.76 3.46 -62.78 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.28 Total: 24.34 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 2.96 Total: -36.36 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -1.24 Total: -96.02 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -66.24 3.46 -62.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.405 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds