Wall clock time and date at job start Mon Mar 30 2020 07:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38280 * 119.84041 * 2 1 4 4 C 1.38342 * 120.16856 * 180.02562 * 3 2 1 5 5 C 1.37783 * 120.14243 * 0.03594 * 4 3 2 6 6 C 1.40173 * 120.08242 * 359.96640 * 5 4 3 7 7 C 1.38227 * 119.84186 * 180.02562 * 2 1 3 8 8 C 1.51198 * 130.42412 * 359.89707 * 7 2 1 9 9 C 1.53481 * 106.26025 * 179.97438 * 8 7 2 10 10 C 1.47566 * 130.00428 * 180.02562 * 6 5 4 11 11 N 1.29741 * 125.97987 * 359.94183 * 10 6 5 12 12 N 1.40100 * 120.00143 * 180.02562 * 11 10 6 13 13 C 1.46499 * 120.00157 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.47078 * 330.00311 * 13 12 11 15 15 C 1.53000 * 109.47123 * 90.00001 * 13 12 11 16 16 C 1.50699 * 109.47217 * 210.00306 * 13 12 11 17 17 H 1.07997 * 120.00163 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99934 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00297 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99969 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.46863 * 90.00026 * 20 18 16 22 22 H 1.48501 * 109.47354 * 209.99627 * 20 18 16 23 23 H 1.48498 * 109.47155 * 330.00383 * 20 18 16 24 24 H 1.09000 * 109.47234 * 89.99852 * 1 2 3 25 25 H 1.08990 * 109.47185 * 210.00308 * 1 2 3 26 26 H 1.09008 * 109.46858 * 329.99911 * 1 2 3 27 27 H 1.08006 * 119.91641 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.92986 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.95688 * 179.97438 * 5 4 3 30 30 H 1.08998 * 110.10802 * 60.82216 * 8 7 2 31 31 H 1.08998 * 110.14830 * 299.20431 * 8 7 2 32 32 H 1.09002 * 110.27360 * 241.05945 * 9 8 7 33 33 H 1.08997 * 110.26985 * 119.08162 * 9 8 7 34 34 H 0.97002 * 119.99798 * 359.97438 * 12 11 10 35 35 H 1.08996 * 109.47114 * 59.99605 * 15 13 12 36 36 H 1.08996 * 109.47325 * 180.02562 * 15 13 12 37 37 H 1.09003 * 109.47266 * 299.99791 * 15 13 12 38 38 H 0.96999 * 120.00539 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1995 0.0000 4 6 3.5785 1.2074 -0.0005 5 6 4.2772 0.0198 -0.0018 6 6 3.5880 -1.2008 -0.0019 7 6 2.1948 -1.1990 -0.0005 8 6 1.6843 -2.6222 0.0009 9 6 2.9261 -3.5242 -0.0013 10 6 4.1060 -2.5826 -0.0026 11 7 5.3566 -2.9278 -0.0044 12 7 5.7091 -4.2837 -0.0054 13 6 7.1213 -4.6735 -0.0081 14 1 7.7074 -3.9121 -0.5227 15 6 7.6154 -4.8097 1.4335 16 6 7.2769 -5.9930 -0.7192 17 1 6.4105 -6.4917 -1.1279 18 6 8.5252 -6.5642 -0.8471 19 7 9.5802 -5.9573 -0.3489 20 14 8.7180 -8.2002 -1.7279 21 1 8.9536 -7.9589 -3.1742 22 1 9.8722 -8.9380 -1.1548 23 1 7.4814 -9.0041 -1.5553 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.6511 2.1325 0.0004 28 1 4.1120 2.1465 -0.0001 29 1 5.3571 0.0295 -0.0027 30 1 1.0867 -2.8068 -0.8918 31 1 1.0890 -2.8066 0.8951 32 1 2.9391 -4.1467 -0.8959 33 1 2.9413 -4.1479 0.8924 34 1 5.0180 -4.9644 -0.0044 35 1 7.0293 -5.5709 1.9482 36 1 8.6662 -5.0992 1.4316 37 1 7.5030 -3.8552 1.9479 38 1 10.4584 -6.3593 -0.4385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:44 Heat of formation + Delta-G solvation = 47.016065 kcal Electronic energy + Delta-G solvation = -18288.298803 eV Core-core repulsion = 15516.431564 eV Total energy + Delta-G solvation = -2771.867239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92691 -36.81618 -35.04823 -33.44544 -32.65805 -30.79804 -28.97696 -27.43283 -26.47354 -25.28761 -24.37434 -21.92911 -20.79593 -20.34795 -18.81396 -16.96848 -16.02824 -15.26664 -15.23204 -15.13172 -14.69689 -14.36578 -13.66087 -13.56217 -12.92358 -12.72571 -12.57656 -12.35847 -12.24799 -11.92508 -11.76000 -11.62384 -11.25294 -11.17784 -11.01932 -10.80663 -10.67056 -10.40871 -10.24739 -10.17070 -9.46725 -9.05221 -8.70244 -8.48381 -8.43098 -6.73642 -6.15331 -4.23936 1.23676 1.52428 3.00296 3.23266 3.29582 3.31792 3.73885 4.05145 4.34500 4.55194 4.89085 4.97026 5.09089 5.17029 5.25484 5.29678 5.35123 5.44554 5.55721 5.70252 5.73777 5.78823 5.92123 6.12809 6.13439 6.17295 6.23713 6.62178 6.64993 6.73284 6.79626 6.98399 7.07022 7.13796 7.18194 7.56348 7.76299 7.84270 8.13276 8.28369 8.83445 9.31537 9.43019 10.90519 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.037990 B = 0.003982 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.862165 B = 7030.426695 C = 7453.460553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 C -0.128 4.128 4 C -0.118 4.118 5 C -0.101 4.101 6 C -0.006 4.006 7 C -0.093 4.093 8 C -0.068 4.068 9 C -0.102 4.102 10 C 0.012 3.988 11 N -0.180 5.180 12 N -0.618 5.618 13 C 0.296 3.704 14 H 0.042 0.958 15 C -0.150 4.150 16 C -0.531 4.531 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.370 0.630 35 H 0.026 0.974 36 H 0.090 0.910 37 H 0.012 0.988 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 10.079 1.286 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.009 4.009 7 C -0.096 4.096 8 C -0.106 4.106 9 C -0.142 4.142 10 C -0.175 4.175 11 N 0.007 4.993 12 N -0.354 5.354 13 C 0.194 3.806 14 H 0.060 0.940 15 C -0.209 4.209 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.206 0.794 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.032 0.968 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.239 10.287 1.306 17.615 hybrid contribution -0.655 -1.555 -0.434 1.742 sum -14.895 8.732 0.872 17.287 Atomic orbital electron populations 1.20736 0.91562 1.02438 1.02036 1.19252 0.95556 0.91697 1.01235 1.20889 0.94224 0.96851 1.02719 1.20919 0.94116 0.97642 1.00969 1.21070 1.00292 0.90925 0.99849 1.18860 0.92763 0.90793 0.98439 1.20359 0.93499 0.94442 1.01292 1.20641 0.97424 0.90313 1.02186 1.21080 0.93152 0.97553 1.02384 1.22484 0.90065 0.93152 1.11843 1.73997 1.16329 1.03880 1.05084 1.48952 1.09087 0.97218 1.80150 1.18569 0.74067 0.94921 0.93046 0.94005 1.22203 1.03983 0.97082 0.97670 1.21221 0.93804 1.05147 1.36837 0.92200 1.24857 0.95491 0.97872 0.95384 1.69888 0.98939 1.38853 1.44653 0.86419 0.77796 0.83022 0.79705 1.20510 1.21002 1.19861 0.91445 0.91697 0.91843 0.86297 0.86080 0.85745 0.90450 0.90465 0.90537 0.90647 0.79389 0.95515 0.89108 0.96845 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.86 36.01 0.36 -0.61 16 2 C -0.08 -0.92 5.88 -104.61 -0.62 -1.54 16 3 C -0.13 -1.46 9.69 -39.53 -0.38 -1.85 16 4 C -0.12 -1.48 10.02 -39.71 -0.40 -1.87 16 5 C -0.10 -1.53 10.10 -39.02 -0.39 -1.93 16 6 C -0.01 -0.10 6.11 -104.96 -0.64 -0.74 16 7 C -0.09 -1.29 6.07 -103.98 -0.63 -1.92 16 8 C -0.07 -0.83 6.14 -27.39 -0.17 -0.99 16 9 C -0.10 -1.49 5.66 -27.51 -0.16 -1.65 16 10 C 0.01 0.23 7.44 -79.55 -0.59 -0.37 16 11 N -0.18 -3.87 11.58 35.19 0.41 -3.46 16 12 N -0.62 -13.98 6.07 -5.88 -0.04 -14.01 16 13 C 0.30 7.64 3.23 -69.08 -0.22 7.42 16 14 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.15 -3.74 9.29 37.16 0.35 -3.39 16 16 C -0.53 -14.33 8.74 -34.44 -0.30 -14.63 16 17 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 19 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 26 H 0.06 0.46 8.08 -51.92 -0.42 0.04 16 27 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 29 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.37 7.75 7.65 -182.60 -1.40 6.36 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -29.00 318.25 -9.85 -38.84 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.72 Total: 4.56 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -3.90 Total: -22.36 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 1.00 Total: -41.60 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.00 -9.85 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.860 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds