Wall clock time and date at job start Mon Mar 30 2020 07:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38280 * 119.84041 * 2 1 4 4 C 1.38342 * 120.16856 * 180.02562 * 3 2 1 5 5 C 1.37783 * 120.14243 * 0.03594 * 4 3 2 6 6 C 1.40173 * 120.08242 * 359.96640 * 5 4 3 7 7 C 1.38227 * 119.84186 * 180.02562 * 2 1 3 8 8 C 1.51198 * 130.42412 * 359.89707 * 7 2 1 9 9 C 1.53481 * 106.26025 * 179.97438 * 8 7 2 10 10 C 1.47566 * 130.00428 * 180.02562 * 6 5 4 11 11 N 1.29741 * 125.97987 * 359.94183 * 10 6 5 12 12 N 1.40100 * 120.00143 * 180.02562 * 11 10 6 13 13 C 1.46499 * 120.00157 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.47078 * 330.00311 * 13 12 11 15 15 C 1.53000 * 109.47123 * 90.00001 * 13 12 11 16 16 C 1.50699 * 109.47217 * 210.00306 * 13 12 11 17 17 H 1.07997 * 120.00163 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99934 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00297 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99969 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.46863 * 90.00026 * 20 18 16 22 22 H 1.48501 * 109.47354 * 209.99627 * 20 18 16 23 23 H 1.48498 * 109.47155 * 330.00383 * 20 18 16 24 24 H 1.09000 * 109.47234 * 89.99852 * 1 2 3 25 25 H 1.08990 * 109.47185 * 210.00308 * 1 2 3 26 26 H 1.09008 * 109.46858 * 329.99911 * 1 2 3 27 27 H 1.08006 * 119.91641 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.92986 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.95688 * 179.97438 * 5 4 3 30 30 H 1.08998 * 110.10802 * 60.82216 * 8 7 2 31 31 H 1.08998 * 110.14830 * 299.20431 * 8 7 2 32 32 H 1.09002 * 110.27360 * 241.05945 * 9 8 7 33 33 H 1.08997 * 110.26985 * 119.08162 * 9 8 7 34 34 H 0.97002 * 119.99798 * 359.97438 * 12 11 10 35 35 H 1.08996 * 109.47114 * 59.99605 * 15 13 12 36 36 H 1.08996 * 109.47325 * 180.02562 * 15 13 12 37 37 H 1.09003 * 109.47266 * 299.99791 * 15 13 12 38 38 H 0.96999 * 120.00539 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1995 0.0000 4 6 3.5785 1.2074 -0.0005 5 6 4.2772 0.0198 -0.0018 6 6 3.5880 -1.2008 -0.0019 7 6 2.1948 -1.1990 -0.0005 8 6 1.6843 -2.6222 0.0009 9 6 2.9261 -3.5242 -0.0013 10 6 4.1060 -2.5826 -0.0026 11 7 5.3566 -2.9278 -0.0044 12 7 5.7091 -4.2837 -0.0054 13 6 7.1213 -4.6735 -0.0081 14 1 7.7074 -3.9121 -0.5227 15 6 7.6154 -4.8097 1.4335 16 6 7.2769 -5.9930 -0.7192 17 1 6.4105 -6.4917 -1.1279 18 6 8.5252 -6.5642 -0.8471 19 7 9.5802 -5.9573 -0.3489 20 14 8.7180 -8.2002 -1.7279 21 1 8.9536 -7.9589 -3.1742 22 1 9.8722 -8.9380 -1.1548 23 1 7.4814 -9.0041 -1.5553 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.6511 2.1325 0.0004 28 1 4.1120 2.1465 -0.0001 29 1 5.3571 0.0295 -0.0027 30 1 1.0867 -2.8068 -0.8918 31 1 1.0890 -2.8066 0.8951 32 1 2.9391 -4.1467 -0.8959 33 1 2.9413 -4.1479 0.8924 34 1 5.0180 -4.9644 -0.0044 35 1 7.0293 -5.5709 1.9482 36 1 8.6662 -5.0992 1.4316 37 1 7.5030 -3.8552 1.9479 38 1 10.4584 -6.3593 -0.4385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:41 Heat of formation + Delta-G solvation = 31.392539 kcal Electronic energy + Delta-G solvation = -18288.976290 eV Core-core repulsion = 15516.431564 eV Total energy + Delta-G solvation = -2772.544726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.02207 -38.26840 -36.61518 -34.96533 -33.82354 -32.53952 -30.05582 -29.03674 -27.43110 -27.29614 -25.69482 -23.13562 -22.19632 -21.75090 -20.28390 -18.62285 -17.53778 -16.98871 -16.32795 -16.26038 -16.01291 -15.62540 -15.26139 -14.53632 -14.41166 -14.21902 -13.94014 -13.60136 -13.43548 -13.01855 -12.94179 -12.89512 -12.82140 -12.78947 -12.65753 -12.30501 -12.18623 -12.03220 -11.77996 -11.66711 -11.17072 -10.81265 -10.60835 -9.88973 -9.41259 -8.35488 -8.18143 -6.37726 0.07863 0.50733 1.41554 1.42323 1.53124 1.70434 2.13188 2.44787 2.95564 3.08835 3.46100 3.79925 3.98810 4.16582 4.18516 4.27305 4.32902 4.50036 4.61257 4.71105 4.82059 4.86847 4.91981 4.95191 5.01088 5.01918 5.09011 5.10985 5.17258 5.29032 5.42852 5.53142 5.62680 5.64591 5.72485 5.80231 5.88986 6.15362 6.17213 6.38977 6.81511 7.33968 7.76284 8.85354 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.037990 B = 0.003982 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.862165 B = 7030.426695 C = 7453.460553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.080 4.080 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.057 4.057 7 C -0.090 4.090 8 C -0.062 4.062 9 C -0.107 4.107 10 C 0.040 3.960 11 N -0.242 5.242 12 N -0.636 5.636 13 C 0.307 3.693 14 H -0.002 1.002 15 C -0.135 4.135 16 C -0.548 4.548 17 H 0.062 0.938 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.973 3.027 21 H -0.276 1.276 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.146 0.854 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.374 0.626 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.014 0.986 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.108 10.862 1.035 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.134 4.134 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.059 4.059 7 C -0.093 4.093 8 C -0.099 4.099 9 C -0.147 4.147 10 C -0.150 4.150 11 N -0.051 5.051 12 N -0.372 5.372 13 C 0.203 3.797 14 H 0.016 0.984 15 C -0.194 4.194 16 C -0.587 4.587 17 H 0.080 0.920 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.797 3.203 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.189 1.189 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.173 0.827 28 H 0.163 0.837 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.211 0.789 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.033 0.967 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.714 11.083 1.060 20.922 hybrid contribution 0.202 -1.504 -0.351 1.558 sum -17.512 9.579 0.709 19.973 Atomic orbital electron populations 1.20816 0.88663 1.03894 1.03236 1.19715 0.97640 0.90922 0.99730 1.21391 0.93781 0.98346 0.99839 1.21223 0.95055 0.97433 1.00199 1.21168 0.99816 0.92096 1.00913 1.19081 0.94388 0.90108 1.02345 1.20662 0.92279 0.96118 1.00212 1.20691 0.96283 0.88423 1.04465 1.21229 0.93059 0.97626 1.02758 1.23337 0.90268 0.95374 1.06036 1.74022 1.18401 1.03009 1.09668 1.48361 1.07579 0.98026 1.83270 1.18139 0.75676 0.93312 0.92588 0.98431 1.22013 1.02622 0.97139 0.97652 1.21502 0.94227 1.05709 1.37300 0.92026 1.25740 0.95035 1.01438 0.95963 1.70020 0.99391 1.40408 1.45515 0.85340 0.78064 0.78588 0.78307 1.20207 1.20381 1.18895 0.90202 0.90830 0.89966 0.82691 0.83672 0.87609 0.88169 0.87996 0.90260 0.90033 0.78896 0.94974 0.91111 0.96673 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.86 71.24 0.70 -0.65 16 2 C -0.08 -1.60 5.88 -19.86 -0.12 -1.72 16 3 C -0.11 -2.18 9.69 22.30 0.22 -1.97 16 4 C -0.12 -2.78 10.02 22.19 0.22 -2.56 16 5 C -0.12 -3.68 10.10 22.63 0.23 -3.45 16 6 C -0.06 -1.85 6.11 -20.09 -0.12 -1.98 16 7 C -0.09 -2.28 6.07 -19.45 -0.12 -2.39 16 8 C -0.06 -1.31 6.14 30.17 0.19 -1.12 16 9 C -0.11 -3.04 5.66 30.09 0.17 -2.87 16 10 C 0.04 1.47 7.44 45.41 0.34 1.81 16 11 N -0.24 -11.00 11.58 -42.57 -0.49 -11.49 16 12 N -0.64 -30.37 6.07 -172.52 -1.05 -31.42 16 13 C 0.31 16.78 3.23 44.25 0.14 16.93 16 14 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 15 C -0.13 -7.07 9.29 71.98 0.67 -6.40 16 16 C -0.55 -30.64 8.74 25.60 0.22 -30.42 16 17 H 0.06 3.33 7.79 -2.91 -0.02 3.31 16 18 C 0.02 1.02 5.30 84.65 0.45 1.47 16 19 N -0.92 -52.84 11.32 21.45 0.24 -52.59 16 20 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 26 H 0.08 0.74 8.08 -2.38 -0.02 0.72 16 27 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.11 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.37 16.40 7.65 -213.32 -1.63 14.77 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 37 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.31 318.25 3.34 -62.98 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.58 Total: 22.73 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.19 Total: -35.32 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -1.30 Total: -95.50 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.31 3.34 -62.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.369 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds