Wall clock time and date at job start Mon Mar 30 2020 07:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41828 * 119.99573 * 2 1 4 4 N 1.30212 * 119.99833 * 354.20931 * 3 2 1 5 5 N 1.40106 * 119.99660 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99895 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47586 * 30.00017 * 6 5 4 8 8 C 1.53002 * 109.47159 * 270.00004 * 6 5 4 9 9 C 1.50699 * 109.47185 * 150.00085 * 6 5 4 10 10 H 1.07999 * 119.99688 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00067 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00008 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 120.00004 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.46907 * 180.02562 * 13 11 9 15 15 H 1.48490 * 109.47094 * 300.00289 * 13 11 9 16 16 H 1.48495 * 109.46605 * 60.00516 * 13 11 9 17 17 C 1.34849 * 120.00464 * 179.97438 * 2 1 3 18 18 C 1.47207 * 120.00369 * 171.98519 * 17 2 1 19 19 C 1.39835 * 120.16588 * 326.38127 * 18 17 2 20 20 C 1.37896 * 119.82244 * 179.74504 * 19 18 17 21 21 C 1.38395 * 120.17108 * 0.52864 * 20 19 18 22 22 C 1.38399 * 120.34763 * 359.74781 * 21 20 19 23 23 C 1.37897 * 120.16951 * 359.97362 * 22 21 20 24 24 H 1.08999 * 109.46662 * 90.00518 * 1 2 3 25 25 H 1.09003 * 109.46640 * 210.00170 * 1 2 3 26 26 H 1.08997 * 109.47352 * 330.00194 * 1 2 3 27 27 H 1.07995 * 119.99938 * 174.20389 * 3 2 1 28 28 H 0.96998 * 119.99756 * 0.02562 * 5 4 3 29 29 H 1.09009 * 109.46829 * 59.99957 * 8 6 5 30 30 H 1.08998 * 109.47552 * 179.97438 * 8 6 5 31 31 H 1.08996 * 109.47142 * 299.99973 * 8 6 5 32 32 H 0.96999 * 119.99891 * 179.97438 * 12 11 9 33 33 H 1.08002 * 120.00073 * 351.98118 * 17 2 1 34 34 H 1.07993 * 120.08961 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.91256 * 180.26045 * 20 19 18 36 36 H 1.08001 * 119.82755 * 179.72055 * 21 20 19 37 37 H 1.07999 * 119.91736 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.09039 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.2283 0.0000 4 7 1.5699 2.3530 -0.1138 5 7 2.2703 3.5665 -0.1132 6 6 1.5433 4.8319 -0.2407 7 1 0.5493 4.7254 0.1938 8 6 1.4162 5.2004 -1.7202 9 6 2.2947 5.9182 0.4847 10 1 3.2214 5.6890 0.9898 11 6 1.7998 7.2050 0.5028 12 7 0.6716 7.4842 -0.1127 13 14 2.7309 8.5514 1.4026 14 1 1.9940 9.8341 1.2733 15 1 2.8531 8.1939 2.8386 16 1 4.0854 8.6963 0.8114 17 6 2.1813 -1.1678 0.0005 18 6 3.6426 -1.1741 -0.1772 19 6 4.2551 -0.2197 -0.9955 20 6 5.6250 -0.2289 -1.1528 21 6 6.3923 -1.1860 -0.5121 22 6 5.7930 -2.1374 0.2949 23 6 4.4248 -2.1378 0.4668 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.2919 1.2308 0.0945 28 1 3.2366 3.5686 -0.0285 29 1 0.8726 4.4145 -2.2449 30 1 0.8749 6.1416 -1.8151 31 1 2.4101 5.3070 -2.1547 32 1 0.3232 8.3894 -0.0997 33 1 1.6493 -2.0985 0.1314 34 1 3.6572 0.5253 -1.4993 35 1 6.0999 0.5101 -1.7811 36 1 7.4644 -1.1908 -0.6428 37 1 6.3984 -2.8813 0.7913 38 1 3.9585 -2.8805 1.0971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:05 Heat of formation + Delta-G solvation = 77.059563 kcal Electronic energy + Delta-G solvation = -18051.210938 eV Core-core repulsion = 15280.646483 eV Total energy + Delta-G solvation = -2770.564456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -39.31773 -37.02271 -35.37552 -33.42834 -31.39653 -30.89430 -30.48544 -27.33829 -26.45890 -25.27561 -23.46889 -22.09155 -21.31320 -20.22241 -18.34243 -17.20153 -16.07779 -16.07065 -15.42501 -14.94442 -14.75417 -13.99728 -13.55664 -13.42402 -13.15963 -13.15217 -12.52425 -12.46148 -12.36989 -12.09409 -11.65380 -11.38516 -11.06798 -10.99083 -10.94374 -10.86749 -10.63707 -10.29618 -10.24574 -9.63218 -9.48457 -9.06694 -8.79483 -8.56564 -8.17290 -6.70018 -6.16866 -4.25735 0.92446 1.46320 2.03403 3.23737 3.28503 3.30121 3.49979 3.82056 3.98230 4.34630 4.88212 4.95585 5.00505 5.15415 5.16181 5.34619 5.42012 5.49789 5.64042 5.81186 5.94749 6.02531 6.04460 6.21366 6.26093 6.37886 6.52884 6.56388 6.65357 6.80099 6.84939 6.95448 7.03822 7.09566 7.18592 7.53632 7.73117 7.81068 8.09908 8.24688 8.80940 9.24601 9.41216 10.88780 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.004221 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.936511 B = 6632.132309 C = 7368.950053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.012 4.012 3 C -0.044 4.044 4 N -0.182 5.182 5 N -0.616 5.616 6 C 0.295 3.705 7 H 0.043 0.957 8 C -0.150 4.150 9 C -0.533 4.533 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.285 1.285 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.158 4.158 18 C -0.034 4.034 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.118 4.118 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.369 0.631 29 H 0.013 0.987 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 -16.619 -0.884 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.015 4.015 3 C -0.248 4.248 4 N 0.003 4.997 5 N -0.352 5.352 6 C 0.193 3.807 7 H 0.061 0.939 8 C -0.209 4.209 9 C -0.572 4.572 10 H 0.077 0.923 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.210 1.210 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.182 4.182 18 C -0.034 4.034 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.137 4.137 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.205 0.795 29 H 0.032 0.968 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.632 -15.763 -1.039 16.462 hybrid contribution 1.839 0.602 0.595 2.024 sum 6.471 -15.161 -0.444 16.490 Atomic orbital electron populations 1.20766 0.91249 1.02638 1.02400 1.19354 0.95394 0.91084 0.95622 1.22949 0.97808 0.91111 1.12944 1.74263 1.28637 0.93553 1.03286 1.49215 1.06713 1.01004 1.78243 1.18578 0.92983 0.76368 0.92782 0.93940 1.22200 0.99331 1.01701 0.97669 1.21189 1.08820 0.93165 1.34012 0.92254 1.24850 0.95025 0.98371 0.95282 1.69876 1.19455 1.20767 1.42232 0.86477 0.79729 0.80606 0.80141 1.21025 1.20155 1.20142 1.21658 0.91492 0.97094 1.08005 1.19030 0.93403 0.94860 0.96117 1.21689 0.94805 0.98273 0.98678 1.21110 0.94039 0.98803 0.99918 1.21150 0.99577 0.95881 0.98312 1.21021 0.94847 0.98998 0.99205 1.21279 0.93627 0.98928 0.99843 0.91043 0.92148 0.90715 0.87280 0.79522 0.96823 0.89080 0.95499 0.92456 0.85889 0.85214 0.86236 0.86546 0.86427 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.73 36.01 0.35 -1.16 16 2 C -0.01 -0.18 5.80 -104.45 -0.61 -0.79 16 3 C -0.04 -0.77 8.34 -16.87 -0.14 -0.91 16 4 N -0.18 -3.72 10.55 30.94 0.33 -3.39 16 5 N -0.62 -13.67 6.10 -5.88 -0.04 -13.71 16 6 C 0.29 7.49 3.23 -69.08 -0.22 7.27 16 7 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 8 C -0.15 -3.66 9.29 37.16 0.35 -3.32 16 9 C -0.53 -14.28 8.74 -34.44 -0.30 -14.58 16 10 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 11 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 12 N -0.89 -24.54 11.32 55.43 0.63 -23.92 16 13 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.16 -2.01 9.50 -37.14 -0.35 -2.36 16 18 C -0.03 -0.45 5.40 -105.06 -0.57 -1.01 16 19 C -0.12 -1.58 7.40 -39.11 -0.29 -1.86 16 20 C -0.12 -1.47 10.03 -39.65 -0.40 -1.87 16 21 C -0.13 -1.45 10.04 -39.46 -0.40 -1.84 16 22 C -0.12 -1.32 10.03 -39.65 -0.40 -1.71 16 23 C -0.12 -1.36 9.80 -39.11 -0.38 -1.75 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 26 H 0.07 1.13 7.61 -51.93 -0.40 0.73 16 27 H 0.11 1.84 5.13 -52.49 -0.27 1.57 16 28 H 0.37 7.69 8.58 -182.59 -1.57 6.12 16 29 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.12 1.29 8.05 -52.49 -0.42 0.86 16 34 H 0.13 1.87 6.00 -52.49 -0.32 1.56 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -28.12 321.88 -9.34 -37.45 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.63 Total: 7.19 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.45 Total: -24.18 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.92 Total: -41.02 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.12 -9.34 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.512 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds