Wall clock time and date at job start Mon Mar 30 2020 07:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41828 * 119.99573 * 2 1 4 4 N 1.30212 * 119.99833 * 354.20931 * 3 2 1 5 5 N 1.40106 * 119.99660 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99895 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47586 * 30.00017 * 6 5 4 8 8 C 1.53002 * 109.47159 * 270.00004 * 6 5 4 9 9 C 1.50699 * 109.47185 * 150.00085 * 6 5 4 10 10 H 1.07999 * 119.99688 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00067 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00008 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 120.00004 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.46907 * 180.02562 * 13 11 9 15 15 H 1.48490 * 109.47094 * 300.00289 * 13 11 9 16 16 H 1.48495 * 109.46605 * 60.00516 * 13 11 9 17 17 C 1.34849 * 120.00464 * 179.97438 * 2 1 3 18 18 C 1.47207 * 120.00369 * 171.98519 * 17 2 1 19 19 C 1.39835 * 120.16588 * 326.38127 * 18 17 2 20 20 C 1.37896 * 119.82244 * 179.74504 * 19 18 17 21 21 C 1.38395 * 120.17108 * 0.52864 * 20 19 18 22 22 C 1.38399 * 120.34763 * 359.74781 * 21 20 19 23 23 C 1.37897 * 120.16951 * 359.97362 * 22 21 20 24 24 H 1.08999 * 109.46662 * 90.00518 * 1 2 3 25 25 H 1.09003 * 109.46640 * 210.00170 * 1 2 3 26 26 H 1.08997 * 109.47352 * 330.00194 * 1 2 3 27 27 H 1.07995 * 119.99938 * 174.20389 * 3 2 1 28 28 H 0.96998 * 119.99756 * 0.02562 * 5 4 3 29 29 H 1.09009 * 109.46829 * 59.99957 * 8 6 5 30 30 H 1.08998 * 109.47552 * 179.97438 * 8 6 5 31 31 H 1.08996 * 109.47142 * 299.99973 * 8 6 5 32 32 H 0.96999 * 119.99891 * 179.97438 * 12 11 9 33 33 H 1.08002 * 120.00073 * 351.98118 * 17 2 1 34 34 H 1.07993 * 120.08961 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.91256 * 180.26045 * 20 19 18 36 36 H 1.08001 * 119.82755 * 179.72055 * 21 20 19 37 37 H 1.07999 * 119.91736 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.09039 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.2283 0.0000 4 7 1.5699 2.3530 -0.1138 5 7 2.2703 3.5665 -0.1132 6 6 1.5433 4.8319 -0.2407 7 1 0.5493 4.7254 0.1938 8 6 1.4162 5.2004 -1.7202 9 6 2.2947 5.9182 0.4847 10 1 3.2214 5.6890 0.9898 11 6 1.7998 7.2050 0.5028 12 7 0.6716 7.4842 -0.1127 13 14 2.7309 8.5514 1.4026 14 1 1.9940 9.8341 1.2733 15 1 2.8531 8.1939 2.8386 16 1 4.0854 8.6963 0.8114 17 6 2.1813 -1.1678 0.0005 18 6 3.6426 -1.1741 -0.1772 19 6 4.2551 -0.2197 -0.9955 20 6 5.6250 -0.2289 -1.1528 21 6 6.3923 -1.1860 -0.5121 22 6 5.7930 -2.1374 0.2949 23 6 4.4248 -2.1378 0.4668 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.2919 1.2308 0.0945 28 1 3.2366 3.5686 -0.0285 29 1 0.8726 4.4145 -2.2449 30 1 0.8749 6.1416 -1.8151 31 1 2.4101 5.3070 -2.1547 32 1 0.3232 8.3894 -0.0997 33 1 1.6493 -2.0985 0.1314 34 1 3.6572 0.5253 -1.4993 35 1 6.0999 0.5101 -1.7811 36 1 7.4644 -1.1908 -0.6428 37 1 6.3984 -2.8813 0.7913 38 1 3.9585 -2.8805 1.0971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:02 Heat of formation + Delta-G solvation = 62.471096 kcal Electronic energy + Delta-G solvation = -18051.843542 eV Core-core repulsion = 15280.646483 eV Total energy + Delta-G solvation = -2771.197059 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31396 -38.39286 -36.91851 -35.09806 -32.96667 -31.82774 -31.75171 -28.99638 -27.48715 -27.31847 -24.73971 -23.10631 -22.58509 -21.91718 -19.62397 -18.71941 -17.69059 -17.33156 -16.78671 -16.40900 -15.81827 -15.46854 -14.75223 -14.69453 -14.60041 -14.19907 -14.06480 -13.92975 -13.44737 -13.33146 -13.14602 -12.93761 -12.77987 -12.65305 -12.37118 -12.23978 -12.09544 -11.91686 -11.87268 -11.16275 -10.90529 -10.66594 -10.54578 -9.75772 -9.39376 -8.26312 -8.12282 -6.37153 -0.14412 0.53794 0.92981 1.41402 1.43290 1.51306 2.20111 2.25595 2.47555 3.00850 3.09072 3.86263 4.02159 4.10288 4.15087 4.30610 4.38222 4.60283 4.62304 4.72379 4.76434 4.88339 4.91730 4.97256 5.05922 5.10215 5.17203 5.21061 5.25342 5.46424 5.53808 5.59417 5.65779 5.71366 5.74611 5.83885 5.98487 6.14493 6.20473 6.38218 6.81202 7.34361 7.72432 8.85208 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.004221 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.936511 B = 6632.132309 C = 7368.950053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.062 4.062 3 C 0.003 3.997 4 N -0.235 5.235 5 N -0.639 5.639 6 C 0.306 3.694 7 H 0.002 0.998 8 C -0.135 4.135 9 C -0.551 4.551 10 H 0.059 0.941 11 C 0.021 3.979 12 N -0.913 5.913 13 Si 0.970 3.030 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.268 1.268 17 C -0.104 4.104 18 C -0.066 4.066 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.112 0.888 28 H 0.370 0.630 29 H 0.017 0.983 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.158 0.842 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 -19.333 -0.037 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.064 4.064 3 C -0.204 4.204 4 N -0.046 5.046 5 N -0.375 5.375 6 C 0.203 3.797 7 H 0.020 0.980 8 C -0.194 4.194 9 C -0.590 4.590 10 H 0.077 0.923 11 C -0.180 4.180 12 N -0.551 5.551 13 Si 0.794 3.206 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.193 1.193 17 C -0.129 4.129 18 C -0.066 4.066 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.132 4.132 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.207 0.793 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.176 0.824 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.509 -18.491 -0.197 19.604 hybrid contribution 1.433 1.017 0.324 1.787 sum 7.942 -17.473 0.127 19.194 Atomic orbital electron populations 1.20698 0.90327 1.02760 1.02517 1.19467 0.96262 0.90501 1.00200 1.23469 0.98175 0.91415 1.07321 1.74315 1.28893 0.93528 1.07866 1.48642 1.06236 1.00853 1.81806 1.18131 0.91189 0.77922 0.92483 0.98036 1.22008 0.99081 1.00641 0.97672 1.21479 1.08997 0.94064 1.34431 0.92313 1.25697 0.95813 1.00537 0.95929 1.70004 1.20703 1.21296 1.43141 0.85433 0.78642 0.77680 0.78797 1.20424 1.19870 1.19284 1.22115 0.91507 0.97537 1.01752 1.19240 0.93815 0.95956 0.97583 1.21671 0.95519 0.98278 0.99562 1.21313 0.93745 0.99734 1.00614 1.21526 1.00863 0.95008 0.97170 1.21441 0.94965 0.99218 0.98613 1.21613 0.94073 0.98326 0.99142 0.91018 0.89102 0.93467 0.87080 0.79338 0.96348 0.91141 0.95191 0.92312 0.82447 0.87158 0.85535 0.84128 0.83377 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.73 71.24 0.69 -2.04 16 2 C -0.06 -1.75 5.80 -19.75 -0.11 -1.87 16 3 C 0.00 0.09 8.34 85.82 0.72 0.80 16 4 N -0.24 -10.08 10.55 -56.03 -0.59 -10.67 16 5 N -0.64 -29.99 6.10 -172.52 -1.05 -31.04 16 6 C 0.31 16.48 3.23 44.25 0.14 16.62 16 7 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 8 C -0.13 -6.92 9.29 71.98 0.67 -6.26 16 9 C -0.55 -30.61 8.74 25.60 0.22 -30.39 16 10 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 11 C 0.02 1.14 5.30 84.65 0.45 1.59 16 12 N -0.91 -52.21 11.32 21.45 0.24 -51.97 16 13 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 17 C -0.10 -2.34 9.50 23.85 0.23 -2.12 16 18 C -0.07 -1.55 5.40 -20.15 -0.11 -1.66 16 19 C -0.13 -3.44 7.40 22.58 0.17 -3.27 16 20 C -0.14 -3.11 10.03 22.23 0.22 -2.89 16 21 C -0.13 -2.40 10.04 22.35 0.22 -2.18 16 22 C -0.12 -2.14 10.03 22.23 0.22 -1.91 16 23 C -0.11 -2.14 9.80 22.57 0.22 -1.92 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16 26 H 0.05 1.46 7.61 -2.39 -0.02 1.45 16 27 H 0.11 3.80 5.13 -2.91 -0.01 3.78 16 28 H 0.37 16.29 8.58 -213.32 -1.83 14.46 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.16 2.48 8.05 -2.91 -0.02 2.45 16 34 H 0.11 3.24 6.00 -2.91 -0.02 3.22 16 35 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -63.26 321.88 3.80 -59.47 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.78 Total: 26.67 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.95 Total: -37.48 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -1.40 Total: -93.68 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.26 3.80 -59.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.937 kcal (2) G-P(sol) polarization free energy of solvation -63.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds